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Conserved domains on  [gi|515627738|ref|WP_017060338|]
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MULTISPECIES: nuclear transport factor 2 family protein [Vibrio]

Protein Classification

YybH family protein( domain architecture ID 10008488)

YybH family protein similar to ketosteroid isomerase homolog YybH

CATH:  3.10.450.50
SCOP:  3000472

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YybH COG4319
Ketosteroid isomerase homolog YybH [General function prediction only];
14-118 2.44e-08

Ketosteroid isomerase homolog YybH [General function prediction only];


:

Pssm-ID: 443460 [Multi-domain]  Cd Length: 131  Bit Score: 48.98  E-value: 2.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515627738  14 INAWQKAFNNQDAKGCADQYTKSCVMEARPFGTFEGHEAIQAFWQNIIDQGFK-DVDYTDVKWEEHPDGGY-ILTASWTM 91
Cdd:COG4319   15 LAAFAEAFNAGDADALAALYAEDAVFFDPGGPPVRGREAIRAAWAAAFAAGPRvTFEVEDVRVLVSGDVAVvTGRWRLTG 94

                         90       100       110
                 ....*....|....*....|....*....|...
gi 515627738  92 NKAFGVVHHEH------WALEADGCARLVSDNF 118
Cdd:COG4319   95 TDPDGEPVELAgrytlvFRKQADGRWKIVHDHA 127
 
Name Accession Description Interval E-value
YybH COG4319
Ketosteroid isomerase homolog YybH [General function prediction only];
14-118 2.44e-08

Ketosteroid isomerase homolog YybH [General function prediction only];


Pssm-ID: 443460 [Multi-domain]  Cd Length: 131  Bit Score: 48.98  E-value: 2.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515627738  14 INAWQKAFNNQDAKGCADQYTKSCVMEARPFGTFEGHEAIQAFWQNIIDQGFK-DVDYTDVKWEEHPDGGY-ILTASWTM 91
Cdd:COG4319   15 LAAFAEAFNAGDADALAALYAEDAVFFDPGGPPVRGREAIRAAWAAAFAAGPRvTFEVEDVRVLVSGDVAVvTGRWRLTG 94

                         90       100       110
                 ....*....|....*....|....*....|...
gi 515627738  92 NKAFGVVHHEH------WALEADGCARLVSDNF 118
Cdd:COG4319   95 TDPDGEPVELAgrytlvFRKQADGRWKIVHDHA 127
SnoaL_2 pfam12680
SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.
 14-80 1.63e-03

SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.


Pssm-ID: 432716 [Multi-domain]  Cd Length: 100  Bit Score: 35.34  E-value: 1.63e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515627738   14 INAWQKAFNNQDAKGCADQYTKSCVMEArPFGTFEGHEAIQAFWQNIIdQGFKDVDYTDVKWEEHPD 80
Cdd:pfam12680   1 VRRFYEALNAGDLDALAALFAPDAVFHD-PGGPLRGRDAIRAFFAALF-AAFPDLRFEIHDVIADGD 65
 
Name Accession Description Interval E-value
YybH COG4319
Ketosteroid isomerase homolog YybH [General function prediction only];
14-118 2.44e-08

Ketosteroid isomerase homolog YybH [General function prediction only];


Pssm-ID: 443460 [Multi-domain]  Cd Length: 131  Bit Score: 48.98  E-value: 2.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515627738  14 INAWQKAFNNQDAKGCADQYTKSCVMEARPFGTFEGHEAIQAFWQNIIDQGFK-DVDYTDVKWEEHPDGGY-ILTASWTM 91
Cdd:COG4319   15 LAAFAEAFNAGDADALAALYAEDAVFFDPGGPPVRGREAIRAAWAAAFAAGPRvTFEVEDVRVLVSGDVAVvTGRWRLTG 94

                         90       100       110
                 ....*....|....*....|....*....|...
gi 515627738  92 NKAFGVVHHEH------WALEADGCARLVSDNF 118
Cdd:COG4319   95 TDPDGEPVELAgrytlvFRKQADGRWKIVHDHA 127
SnoaL_2 pfam12680
SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.
 14-80 1.63e-03

SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.


Pssm-ID: 432716 [Multi-domain]  Cd Length: 100  Bit Score: 35.34  E-value: 1.63e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515627738   14 INAWQKAFNNQDAKGCADQYTKSCVMEArPFGTFEGHEAIQAFWQNIIdQGFKDVDYTDVKWEEHPD 80
Cdd:pfam12680   1 VRRFYEALNAGDLDALAALFAPDAVFHD-PGGPLRGRDAIRAFFAALF-AAFPDLRFEIHDVIADGD 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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