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Conserved domains on  [gi|515630184|ref|WP_017062784|]
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MULTISPECIES: hypothetical protein [Vibrio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PulK super family cl43797
Type II secretory pathway, component PulK [Intracellular trafficking, secretion, and vesicular ...
 5-83 6.27e-03

Type II secretory pathway, component PulK [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG3156:

Pssm-ID: 442390 [Multi-domain]  Cd Length: 307  Bit Score: 38.44  E-value: 6.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630184   5 KKQRGVVtlLITsVLLIGALVVTLGT--YRSVFHQIKVAQNEVQGRQEHWRSEGGLEcgftyIAENDLTAIPNDLMDYCQ 82
Cdd:COG3156    6 RRQRGVA--LIT-VLLIVALLAALAAalAERQRLELRRAENLLDRQQARWYALGAEA-----LARARLADDAKDNVDHLG 77


                 .
gi 515630184  83 Q 83
Cdd:COG3156   78 E 78
 
Name Accession Description Interval E-value
PulK COG3156
Type II secretory pathway, component PulK [Intracellular trafficking, secretion, and vesicular ...
 5-83 6.27e-03

Type II secretory pathway, component PulK [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442390 [Multi-domain]  Cd Length: 307  Bit Score: 38.44  E-value: 6.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630184   5 KKQRGVVtlLITsVLLIGALVVTLGT--YRSVFHQIKVAQNEVQGRQEHWRSEGGLEcgftyIAENDLTAIPNDLMDYCQ 82
Cdd:COG3156    6 RRQRGVA--LIT-VLLIVALLAALAAalAERQRLELRRAENLLDRQQARWYALGAEA-----LARARLADDAKDNVDHLG 77


                 .
gi 515630184  83 Q 83
Cdd:COG3156   78 E 78
 
Name Accession Description Interval E-value
PulK COG3156
Type II secretory pathway, component PulK [Intracellular trafficking, secretion, and vesicular ...
 5-83 6.27e-03

Type II secretory pathway, component PulK [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442390 [Multi-domain]  Cd Length: 307  Bit Score: 38.44  E-value: 6.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630184   5 KKQRGVVtlLITsVLLIGALVVTLGT--YRSVFHQIKVAQNEVQGRQEHWRSEGGLEcgftyIAENDLTAIPNDLMDYCQ 82
Cdd:COG3156    6 RRQRGVA--LIT-VLLIVALLAALAAalAERQRLELRRAENLLDRQQARWYALGAEA-----LARARLADDAKDNVDHLG 77


                 .
gi 515630184  83 Q 83
Cdd:COG3156   78 E 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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