|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
3-294 |
7.61e-136 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 386.71 E-value: 7.61e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 3 QILKADKMIDFMRWSKVAFVFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPAHLPDIRSALEAEGFGDATVQNF 82
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 83 GSARDVMVRLRPRDGVAGEtLGNQILSAIENGTGeQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRL 162
Cdd:COG0341 81 GSDNDVLIRTPPLDGESAE-EVEKVRAALKEAFG-DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 163 AAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTL 242
Cdd:COG0341 159 AVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTI 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 515630237 243 ITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGI 294
Cdd:COG0341 239 NTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGK 290
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
11-296 |
2.37e-95 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 297.91 E-value: 2.37e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 11 IDFMRWSKVAFVFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPAHLPDIRSALEAEGFGDATVQNFGSA-RDVM 89
Cdd:PRK13024 449 IDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSDnNQVL 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 90 VRLRPRDGvAGETLGNQILSAIENGTGE--QVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAV 167
Cdd:PRK13024 529 VRTYGILS-DDEEADTEIVAKLKNALKNdkGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAI 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 168 LALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGT 247
Cdd:PRK13024 608 LALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLT 687
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 515630237 248 TLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITR 296
Cdd:PRK13024 688 TLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRR 736
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
40-285 |
1.19e-93 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 278.00 E-value: 1.19e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 40 LNWGLDFTGGTLIEVGFEQPAHLPDIRSALEAEGFGDATVQNFGSARDVMVRLRPRDGVAGETLGNQILSAIENGTGeQV 119
Cdd:TIGR00966 2 FNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELREALEEALKNVDP-DA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTV 199
Cdd:TIGR00966 81 EIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 200 VGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTY 279
Cdd:TIGR00966 161 IGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTY 240
|
....*.
gi 515630237 280 SSIYVA 285
Cdd:TIGR00966 241 SSIFIA 246
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
114-293 |
4.48e-69 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 213.24 E-value: 4.48e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 114 GTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGVFSLMQIEVDLTIV 193
Cdd:pfam02355 8 NVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 194 AALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLG 273
Cdd:pfam02355 88 AALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVG 167
|
170 180
....*....|....*....|
gi 515630237 274 ITVGTYSSIYVASALAMKLG 293
Cdd:pfam02355 168 VIVGTYSSIFIASPILLDLG 187
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
81-217 |
5.08e-04 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 41.69 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 81 NFGSARDVMVRLRprDGVAGETLGNQILSAIENGTgeqVEMRRIEFVGpnVGDELTEAGGLAILvsLICILIYVSVRFEW 160
Cdd:NF037998 910 NFGKFKALMKRIF--SSIAGFTKEGNIGNTPSGGI---LGLRQTPFTA--YGQILQIAISFAII--LLALIVYILIRFKW 980
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 515630237 161 RLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIREN 217
Cdd:NF037998 981 TYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSL 1037
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
174-298 |
5.84e-03 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 38.61 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 174 VIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEvLNSSITQTLSrtLITSGTTLFVV- 252
Cdd:NF037998 481 ISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIEES-FKIANKETIG--IIVDALVVLLIp 557
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 515630237 253 -IALFVQGGAMIHGFATALLLGITVGTYSSIYVA---SALAMKLGITREH 298
Cdd:NF037998 558 nLSLFWIGSNSIKSFATILLVGVIISLVLVIIVArlmIWLTIKLQWFKKY 607
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
3-294 |
7.61e-136 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 386.71 E-value: 7.61e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 3 QILKADKMIDFMRWSKVAFVFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPAHLPDIRSALEAEGFGDATVQNF 82
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 83 GSARDVMVRLRPRDGVAGEtLGNQILSAIENGTGeQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRL 162
Cdd:COG0341 81 GSDNDVLIRTPPLDGESAE-EVEKVRAALKEAFG-DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 163 AAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTL 242
Cdd:COG0341 159 AVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTI 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 515630237 243 ITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGI 294
Cdd:COG0341 239 NTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGK 290
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
11-296 |
2.37e-95 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 297.91 E-value: 2.37e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 11 IDFMRWSKVAFVFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPAHLPDIRSALEAEGFGDATVQNFGSA-RDVM 89
Cdd:PRK13024 449 IDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSDnNQVL 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 90 VRLRPRDGvAGETLGNQILSAIENGTGE--QVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAV 167
Cdd:PRK13024 529 VRTYGILS-DDEEADTEIVAKLKNALKNdkGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAI 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 168 LALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGT 247
Cdd:PRK13024 608 LALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLT 687
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 515630237 248 TLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITR 296
Cdd:PRK13024 688 TLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRR 736
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
40-285 |
1.19e-93 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 278.00 E-value: 1.19e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 40 LNWGLDFTGGTLIEVGFEQPAHLPDIRSALEAEGFGDATVQNFGSARDVMVRLRPRDGVAGETLGNQILSAIENGTGeQV 119
Cdd:TIGR00966 2 FNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELREALEEALKNVDP-DA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTV 199
Cdd:TIGR00966 81 EIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 200 VGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTY 279
Cdd:TIGR00966 161 IGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTY 240
|
....*.
gi 515630237 280 SSIYVA 285
Cdd:TIGR00966 241 SSIFIA 246
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
11-288 |
3.55e-81 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 262.73 E-value: 3.55e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 11 IDFMRWSKVAFVFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQ-PAHLPDIRSALEAEGFGDATVQNFGSARDVM 89
Cdd:PRK14726 547 IRFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQgNADIADIRARLNELNLGEVQVERFGSPRDAL 626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 90 VRLRPRDGvaGETLGNQILSAIENGTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLA 169
Cdd:PRK14726 627 IRIASQDG--GENAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVGAIIA 704
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 170 LAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGTTL 249
Cdd:PRK14726 705 TLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTSATTL 784
|
250 260 270
....*....|....*....|....*....|....*....
gi 515630237 250 FVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASAL 288
Cdd:PRK14726 785 LALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPV 823
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
8-298 |
9.83e-73 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 226.28 E-value: 9.83e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 8 DKMIDFMRWSKVAFVFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPAHLPDIRSALEAEGFGDATVQNFGSARD 87
Cdd:PRK13021 1 MKNINLTKWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEPGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 88 VMVRLRPRDGvagETLGNQILSAIENGTGEqVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAV 167
Cdd:PRK13021 81 WVLRYAPADT---AQSNVDIQQALAPLGTE-VQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 168 LALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGT 247
Cdd:PRK13021 157 FALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGT 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 515630237 248 TLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITREH 298
Cdd:PRK13021 237 TLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEH 287
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
114-293 |
4.48e-69 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 213.24 E-value: 4.48e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 114 GTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGVFSLMQIEVDLTIV 193
Cdd:pfam02355 8 NVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 194 AALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLG 273
Cdd:pfam02355 88 AALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVG 167
|
170 180
....*....|....*....|
gi 515630237 274 ITVGTYSSIYVASALAMKLG 293
Cdd:pfam02355 168 VIVGTYSSIFIASPILLDLG 187
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
124-282 |
2.14e-50 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 165.51 E-value: 2.14e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 124 IEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYS 203
Cdd:TIGR00916 34 VGTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515630237 204 LNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSI 282
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
11-307 |
2.50e-49 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 175.19 E-value: 2.50e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 11 IDFMRWSKVAFVFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQ-PAHLPDIRSALEAEGFGDATVQNFGSARDVM 89
Cdd:PRK13023 453 IPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNgDANLEDINERLAELNIDSARVLPAKSPRSAL 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 90 VRLRPRDgvAGETLGNQILSAIENGTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLA 169
Cdd:PRK13023 533 VIIGSQE--VGDDAEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLS 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 170 LAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSRTLITSGTTL 249
Cdd:PRK13023 611 TLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTF 690
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 515630237 250 FVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGI-TREHLMPPQVDKE 307
Cdd:PRK13023 691 LAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLkPRETDAGDAVDAE 749
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
141-288 |
2.02e-34 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 133.06 E-value: 2.02e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 141 LAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGV-----FSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIR 215
Cdd:PRK12911 1238 IALFGALGIILLYVSLRFEWRYAFSAICALIHDLLATCAVlvalhFFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIR 1317
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515630237 216 ENFRKMRKGEAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASAL 288
Cdd:PRK12911 1318 EDRQEKLFTPMPILINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPL 1390
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
127-288 |
4.14e-13 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 69.24 E-value: 4.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 127 VGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAhDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLND 206
Cdd:TIGR01129 238 IGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVI-NIVLILAILSAFGATLTLPGIAGLILTIGMAVDA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 207 TIVVFDRIREnfrKMRKGEAPE-VLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVA 285
Cdd:TIGR01129 317 NVLIYERIKE---ELRLGKSVRqAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFT 393
|
...
gi 515630237 286 SAL 288
Cdd:TIGR01129 394 RLL 396
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
21-257 |
1.05e-08 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 55.32 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 21 FVFSILMIGtAIFTLTTKSLNWGLDFTGGTLIEVgFEQPAHLPDIRSALEAEGFgdaTVQNFGSARDVMVRLRPRDGVAG 100
Cdd:PRK08578 24 LLLSLLLLG-GTFATTGSPVKLGIDFTGGTEITI-QTNDASPDELESALSGEPG---VDVRKGSGNGYIITFGSGDDTDV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 101 ETLGNQILSAIENgTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFewRLA---AGAVLALAHDVIIT 177
Cdd:PRK08578 99 DKLADAVKEFFNV-DSISELNYSEKQIGPTFGSQFQEQALKAVGFAFIGMAVVVFLIF--RTPvpsLAVILSAFSDIIIA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 178 LGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIREnfrkmRKGEapevLNSSITQTLSRTLITSGTTLFVVIALFV 257
Cdd:PRK08578 176 LALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRVLK-----RRGT----FDESIKRAMRTGITMTLTTIAAMAVLYI 246
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
125-285 |
1.35e-08 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 56.01 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 125 EFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHdVIITLGVFSLMQIEVDLTIVAALLTVVGYSL 204
Cdd:PRK13024 254 RSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLY-IFLTLGALSSLGAVLTLPGIAGLVLGIGMAV 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 205 NDTIVVFDRIRENFRKMRKgeAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYV 284
Cdd:PRK13024 333 DANVLIFERIKEELRKGKS--LKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFL 410
|
.
gi 515630237 285 A 285
Cdd:PRK13024 411 T 411
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
127-284 |
2.03e-08 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 55.12 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 127 VGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHdVIITLGVFSLMQIEVDLTIVAALLTVVGYSLND 206
Cdd:COG0342 261 VGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALN-VVLLLGVLSLLGATLTLPGIAGIILTIGMAVDA 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 207 TIVVFDRIREnfrKMRKGEAPEvlnSSITQTLSRTLIT----SGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSI 282
Cdd:COG0342 340 NVLIFERIRE---ELRAGRSLR---AAIEAGFKRAFSTildaNVTTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAV 413
|
..
gi 515630237 283 YV 284
Cdd:COG0342 414 PV 415
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
127-282 |
2.18e-07 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 52.31 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 127 VGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITlGVFSLMQIEVDLTIVAALLTVVGYSLND 206
Cdd:PRK13023 268 IASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILT-AVLSLIGASISLASIAGLVLTIGLAVDA 346
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515630237 207 TIVVFDRIRENFRKMRkgEAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSI 282
Cdd:PRK13023 347 HILIYERVREDRRKGY--SVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTL 420
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
35-60 |
1.12e-06 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 44.20 E-value: 1.12e-06
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
118-277 |
1.74e-06 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 49.10 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 118 QVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRF-EWRLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAAL 196
Cdd:PRK08343 242 KLDIEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYrEPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGI 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 197 LTVVGYSLNDTIVVFDRIrenfrkMRKGEAPE--VLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGI 274
Cdd:PRK08343 322 IAVIGTGVDDLIIITDEV------LHEGKVPSrkVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGV 395
|
...
gi 515630237 275 TVG 277
Cdd:PRK08343 396 LIG 398
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
122-297 |
1.23e-05 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 46.75 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 122 RRIEFVGPNVGDELTEAGGLAI-----------------LVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGVFSLM 184
Cdd:TIGR00921 162 RSLERTNPPSGKFLDVTGSPAInydierefgkdmgttmaISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 185 QIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEapEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIH 264
Cdd:TIGR00921 242 GIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKG--EAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVS 319
|
170 180 190
....*....|....*....|....*....|...
gi 515630237 265 GFATALLLGITVGTYSSIYVASALAMKLGITRE 297
Cdd:TIGR00921 320 EFGLGLVAGLITAYLLTLLVLPALLQSIDIGRE 352
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
117-288 |
3.14e-05 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 45.22 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 117 EQVEMRrieFVGPNVGDELTEAGGLAILVSLICILIY-------------VSVRFewrlaagavlalahDVIITLGVFSL 183
Cdd:PRK05812 280 EIVEER---TIGPSLGADSIRAGLIAGLIGLALVLLFmilyyrlfglianIALVA--------------NLVLILAVLSL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 184 MQIEVDLTIVAALLTVVGYSLNDTIVVFDRIREnfrKMRKGEAPEvlnSSITQTLSR---TLITS-GTTLFVVIALFVQG 259
Cdd:PRK05812 343 LGATLTLPGIAGIVLTIGMAVDANVLIFERIRE---ELREGRSLR---SAIEAGFKRafsTILDSnITTLIAAIILYALG 416
|
170 180
....*....|....*....|....*....
gi 515630237 260 GAMIHGFATALLLGITVGTYSSIYVASAL 288
Cdd:PRK05812 417 TGPVKGFAVTLGIGILTSMFTAITVTRAL 445
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
127-274 |
6.48e-05 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 44.71 E-value: 6.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 127 VGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIItLGVFSLMQIEVDLTIVAALLTVVGYSLND 206
Cdd:PRK14726 362 VGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLI-IAVLSLLGATLTLPGIAGIVLTIGMAVDS 440
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515630237 207 TIVVFDRIRENFRKMRKgeAPEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGI 274
Cdd:PRK14726 441 NVLIYERIREEEKTGHS--LIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGI 506
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
125-300 |
3.12e-04 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 42.54 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 125 EFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLalahdVIITLGVF--SLMQIEVDLTI--VAALLTVV 200
Cdd:PRK12911 897 EVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGA-----VLLNLLLIwaALQYLDAPLTLsgLAGIVLAM 971
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 201 GYSLNDTIVVFDRIRENFrkmrkgeapeVLNSSITQTL--------SRTLITSGTTLFVVIALFVQGGAMIHGFATALLL 272
Cdd:PRK12911 972 GMAVDANVLVFERIREEY----------LLSRSLSESVeagykkafSAIFDSNLTTILASALLLMLDTGPIKGFALTLII 1041
|
170 180 190
....*....|....*....|....*....|..
gi 515630237 273 GITVGTYSSIYVASALAM----KLGITREHLM 300
Cdd:PRK12911 1042 GIFSSMFTALFMTKFFFMiwmnKTQETQLHMM 1073
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
131-297 |
3.79e-04 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 42.15 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 131 VGDELTEAGGLAILvsLICILIYVSVRfEWRLAAGAVLALAHDVIITLGVFSLMQIEVDL--TIVAALLTVVGysLNDTI 208
Cdd:COG1033 216 IQSDLAIFFPLALL--LILLLLFLFFR-SLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPltILVPPLLLAIG--IDYGI 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 209 VVFDRIRENFRK-MRKGEApevLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASA 287
Cdd:COG1033 291 HLLNRYREERRKgLDKREA---LREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLLPA 367
|
170
....*....|
gi 515630237 288 LAMKLGITRE 297
Cdd:COG1033 368 LLSLLPRPKP 377
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
81-217 |
5.08e-04 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 41.69 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 81 NFGSARDVMVRLRprDGVAGETLGNQILSAIENGTgeqVEMRRIEFVGpnVGDELTEAGGLAILvsLICILIYVSVRFEW 160
Cdd:NF037998 910 NFGKFKALMKRIF--SSIAGFTKEGNIGNTPSGGI---LGLRQTPFTA--YGQILQIAISFAII--LLALIVYILIRFKW 980
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 515630237 161 RLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIREN 217
Cdd:NF037998 981 TYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSL 1037
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
119-288 |
2.20e-03 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 39.67 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 119 VEMRRIefvGPNVGDELTEAGGLAILVSLICILIYVSV---RFEWrlaaGAVLALAHDVIITLGVFSLMQIEVdLTI--V 193
Cdd:PRK12933 425 VEERTI---GPSLGAENIENGFAALALGMGITLLFMALwyrRLGW----VANVALIANMVCLFGLLALIPGAV-LTLpgI 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 194 AALLTVVGYSLNDTIVVFDRIREnfrKMRKGEA-PEVLNSSITQTLSRTLITSGTTLFVVIALFVQGGAMIHGFATALLL 272
Cdd:PRK12933 497 AGLVLTVGMAVDTNVLIFERIKD---KLKEGRSfAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGL 573
|
170
....*....|....*.
gi 515630237 273 GITVGTYSSIYVASAL 288
Cdd:PRK12933 574 GLLTSMFTGIFASRAL 589
|
|
| Peptidase_M19 |
pfam01244 |
Membrane dipeptidase (Peptidase family M19); |
43-82 |
4.50e-03 |
|
Membrane dipeptidase (Peptidase family M19);
Pssm-ID: 395996 Cd Length: 317 Bit Score: 38.38 E-value: 4.50e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 515630237 43 GLDFTGGTLIEVGFEQPAHLPDIRSALEAEGFGDATVQNF 82
Cdd:pfam01244 267 GSDFDGIGETPEGLEDVSKYPNLTAELLRRGYSEADIEKI 306
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
174-298 |
5.84e-03 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 38.61 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515630237 174 VIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEvLNSSITQTLSrtLITSGTTLFVV- 252
Cdd:NF037998 481 ISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIEES-FKIANKETIG--IIVDALVVLLIp 557
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 515630237 253 -IALFVQGGAMIHGFATALLLGITVGTYSSIYVA---SALAMKLGITREH 298
Cdd:NF037998 558 nLSLFWIGSNSIKSFATILLVGVIISLVLVIIVArlmIWLTIKLQWFKKY 607
|
|
| |
