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Conserved domains on  [gi|515636707|ref|WP_017069307|]
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zinc ribbon domain-containing protein [Vibrio crassostreae]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10537594)

zinc ribbon domain-containing protein similar to Escherichia coli YfgJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 6-69 1.02e-20

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


:

Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 76.92  E-value: 1.02e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515636707   6 CPKCQSELAWDG-KYHCESCQAHFTKVGFCPECSCQLEKLQACGAASYFCNgDCNELKSKSRVKF 69
Cdd:pfam07191  1 CPKCQQELEWRGgHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCN-HCNELISKKRVEF 64
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 6-69 1.02e-20

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 76.92  E-value: 1.02e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515636707   6 CPKCQSELAWDG-KYHCESCQAHFTKVGFCPECSCQLEKLQACGAASYFCNgDCNELKSKSRVKF 69
Cdd:pfam07191  1 CPKCQQELEWRGgHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCN-HCNELISKKRVEF 64
PRK04023 PRK04023
DNA polymerase II large subunit; Validated
 5-72 2.22e-03

DNA polymerase II large subunit; Validated


Pssm-ID: 235202 [Multi-domain]  Cd Length: 1121  Bit Score: 34.50  E-value: 2.22e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515636707    5 ICPKCQSELAWdgkYHCESCQAHFTKVGFCPECSCQLEklqacgaaSYFCNGDCNELKSKSRVKFEFK 72
Cdd:PRK04023  628 KCPSCGKETFY---RRCPFCGTHTEPVYRCPRCGIEVE--------EDECEKCGREPTPYSKRKIDLK 684
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 6-69 1.02e-20

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 76.92  E-value: 1.02e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515636707   6 CPKCQSELAWDG-KYHCESCQAHFTKVGFCPECSCQLEKLQACGAASYFCNgDCNELKSKSRVKF 69
Cdd:pfam07191  1 CPKCQQELEWRGgHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCN-HCNELISKKRVEF 64
PRK04023 PRK04023
DNA polymerase II large subunit; Validated
 5-72 2.22e-03

DNA polymerase II large subunit; Validated


Pssm-ID: 235202 [Multi-domain]  Cd Length: 1121  Bit Score: 34.50  E-value: 2.22e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515636707    5 ICPKCQSELAWdgkYHCESCQAHFTKVGFCPECSCQLEklqacgaaSYFCNGDCNELKSKSRVKFEFK 72
Cdd:PRK04023  628 KCPSCGKETFY---RRCPFCGTHTEPVYRCPRCGIEVE--------EDECEKCGREPTPYSKRKIDLK 684
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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