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Conserved domains on  [gi|515639879|ref|WP_017072479|]
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MULTISPECIES: DUF5993 family protein [Vibrio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5993 pfam19455
Family of unknown function (DUF5993); This family of integral membrane proteins is found ...
 15-51 1.44e-05

Family of unknown function (DUF5993); This family of integral membrane proteins is found primarily in proteobacteria. Proteins in this family are approximately 50 amino acids in length.


:

Pssm-ID: 466092  Cd Length: 50  Bit Score: 37.18  E-value: 1.44e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 515639879  15 CAFFDKKTAAYGFFAGSVILGLYWFNHHATDSLPILL 51
Cdd:pfam19455 14 LAWRGKRRLALALFAVSLVLSLAWFKHHATSSLNLSL 50
 
Name Accession Description Interval E-value
DUF5993 pfam19455
Family of unknown function (DUF5993); This family of integral membrane proteins is found ...
 15-51 1.44e-05

Family of unknown function (DUF5993); This family of integral membrane proteins is found primarily in proteobacteria. Proteins in this family are approximately 50 amino acids in length.


Pssm-ID: 466092  Cd Length: 50  Bit Score: 37.18  E-value: 1.44e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 515639879  15 CAFFDKKTAAYGFFAGSVILGLYWFNHHATDSLPILL 51
Cdd:pfam19455 14 LAWRGKRRLALALFAVSLVLSLAWFKHHATSSLNLSL 50
 
Name Accession Description Interval E-value
DUF5993 pfam19455
Family of unknown function (DUF5993); This family of integral membrane proteins is found ...
 15-51 1.44e-05

Family of unknown function (DUF5993); This family of integral membrane proteins is found primarily in proteobacteria. Proteins in this family are approximately 50 amino acids in length.


Pssm-ID: 466092  Cd Length: 50  Bit Score: 37.18  E-value: 1.44e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 515639879  15 CAFFDKKTAAYGFFAGSVILGLYWFNHHATDSLPILL 51
Cdd:pfam19455 14 LAWRGKRRLALALFAVSLVLSLAWFKHHATSSLNLSL 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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