|
Name |
Accession |
Description |
Interval |
E-value |
| SbmC |
COG3449 |
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair]; |
1-286 |
4.48e-54 |
|
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];
Pssm-ID: 442672 [Multi-domain] Cd Length: 286 Bit Score: 177.36 E-value: 4.48e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 1 MSRQHISRINDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLMFDTSSSVVEIA 80
Cdd:COG3449 6 TREADQRRRILLVLIALHDDLDLLLLALLLAFAFHFFFFHRRRRFRALIGRRARLLLRRRLLAALALLLLSSSAIIAAAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 81 HKCGFSSVSSFSRAFKATFNMSPGEWRKHDLQIAEKPYLKDPEvaagylnvsQRELPEPKIVEVSDRMAAYVRHTGYNRS 160
Cdd:COG3449 86 AASGYSSSASFRRFFRAFGGSSRSRRRRAKAKLLALPPLDPPR---------LEPMMDVEIKELPPRRVAYLRHRGPYEE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 161 IRNAWLILKAWANSEQ--RDFSSQFGLHHSNPAWVEMDQCRYVACIAIDEPIKYRSVVNQMVIPGGLHAVFRLNGRYGEL 238
Cdd:COG3449 157 IGEAFERLIAWAKARGllPPDSRTIGIYYDDPDITPPEKLRYDACVTVPEDVALPGGVEVKTIPGGRYAVLRHKGPYEDL 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 515652435 239 LPQISMVLEKWLPASGFKQRSTPAYVHYHRNHFLNSDEVFELDFYLPV 286
Cdd:COG3449 237 GAAWDWLYGEWLPASGYELRDRPCFEIYLNDPRETPEGELITDIYLPL 284
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
23-107 |
2.02e-28 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 104.17 E-value: 2.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 23 PLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAAnQLMFDTSSSVVEIAHKCGFSSVSSFSRAFKATFNMS 102
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERAR-RLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVT 79
|
....*
gi 515652435 103 PGEWR 107
Cdd:smart00342 80 PSEYR 84
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
29-108 |
9.80e-27 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 99.59 E-value: 9.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 29 LSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLMFDTSSSVVEIAHKCGFSSVSSFSRAFKATFNMSPGEWRK 108
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
7-108 |
6.13e-26 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 104.08 E-value: 6.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 7 SRINDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLMfDTSSSVVEIAHKCGFS 86
Cdd:COG4977 210 PRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLE-TTDLSIEEIAAACGFG 288
|
90 100
....*....|....*....|..
gi 515652435 87 SVSSFSRAFKATFNMSPGEWRK 108
Cdd:COG4977 289 SASHFRRAFRRRFGVSPSAYRR 310
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
24-109 |
8.09e-25 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 100.24 E-value: 8.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 24 LSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLMfDTSSSVVEIAHKCGFSSVSSFSRAFKATFNMSP 103
Cdd:COG2207 169 LTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLA-ETDLSISEIAYELGFSSQSHFSRAFKKRFGVTP 247
|
....*.
gi 515652435 104 GEWRKH 109
Cdd:COG2207 248 SEYRKR 253
|
|
| GyrI-like |
pfam06445 |
GyrI-like small molecule binding domain; This family contains the small molecule binding ... |
138-286 |
1.94e-23 |
|
GyrI-like small molecule binding domain; This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.
Pssm-ID: 428947 Cd Length: 153 Bit Score: 93.24 E-value: 1.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 138 EPKIVEVSDRMAAYVRHTG-YNRS-IRNAW--LILKAWANSEQRDFSSQFGLHHSNPAWVEMDQCRYVACIAIDEPIKYR 213
Cdd:pfam06445 1 EVEIVELPAFRVAGLRHRGpYNEEgIGALWeeLCAWASENGLSPAPSPLIGVSYDDPEVTEDEELRYDAGVAVPIPVEGP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515652435 214 SVVNQMVIPGGLHAVFRLNGRYGELLPQISMVLEKWLPASGFKQRSTPAYVHYHRNHFLNSDEVFELDFYLPV 286
Cdd:pfam06445 81 EGVEELELPGGEYAVFRHKGPYDDLQETYAKIYGEWLPESGYERRDGPSFEIYLNDPREVPEEELKTEIYIPV 153
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
16-188 |
9.85e-22 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 93.19 E-value: 9.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 16 IHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLmfDTSSSVVEIAHKCGFSSVSSFSRAF 95
Cdd:COG2169 93 IEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLL--QTGLSVTDAAYAAGFGSLSRFYEAF 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 96 KATFNMSPGEWRKHdlQIAEKPYLKDPEVAAGYLNVSQRELPepkIVEVSDRMAAYVRHTGYNRSIRNAWLILKAWANSE 175
Cdd:COG2169 171 KKLLGMTPSAYRRG--GAGAAIRFAPTPCSLGLLLVAASARG---VCAILLGDDPEALLRDLQDRFPAAELIGGDAAFEQ 245
|
170
....*....|...
gi 515652435 176 QRDFSSQFGLHHS 188
Cdd:COG2169 246 LVAEVVGFVEGPL 258
|
|
| AraC_E_bind |
smart00871 |
Bacterial transcription activator, effector binding domain; This domain is found in the ... |
138-286 |
3.24e-21 |
|
Bacterial transcription activator, effector binding domain; This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Pssm-ID: 214874 [Multi-domain] Cd Length: 158 Bit Score: 87.53 E-value: 3.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 138 EPKIVEVSDRMAAYVRHTGYNRS--IRNAWLILKAWA----NSEQRDFSSQFGLHHSNPAWVEMDQCRYVACIAIDEPIK 211
Cdd:smart00871 1 EVRIVELPAFKVAGLRHRGPNEDekIPELWQRLIQWAkelgLLPVGNSGEPYGVYYDDPDDTPDGEFRYDAGVEVSDEVE 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515652435 212 YRSVVNQMVIPGGLHAVFRLNGRYGELLPQ-ISMVLEKWLPASGFKQR-STPAYVHYHRNHFLNSDEVFELDFYLPV 286
Cdd:smart00871 81 APEGVETKTIPAGKYAVFTHKGGSYDEIQEaWEAIYGEWLPNSGYELRdAGPDFEVYLNDPPDTDPEELVTEIYIPV 157
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
1-107 |
1.18e-13 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 65.72 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 1 MSRQHIsrINDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLMfDTSSSVVEIA 80
Cdd:PRK10219 1 MSHQKI--IQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELR-TTERPIFDIA 77
|
90 100
....*....|....*....|....*..
gi 515652435 81 HKCGFSSVSSFSRAFKATFNMSPGEWR 107
Cdd:PRK10219 78 MDLGYVSQQTFSRVFRRQFDRTPSDYR 104
|
|
| PRK15121 |
PRK15121 |
MDR efflux pump AcrAB transcriptional activator RobA; |
9-265 |
1.58e-13 |
|
MDR efflux pump AcrAB transcriptional activator RobA;
Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 69.27 E-value: 1.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 9 INDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLMFdTSSSVVEIAHKCGFSSV 88
Cdd:PRK15121 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALRL-TSRPILDIALQYRFDSQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 89 SSFSRAFKATFNMSPGEWRKHDLQIAEKpyLKDPevaagyLNVSQRELPEPKIVEVSDRMAAYVRHTgYNRSirnawliL 168
Cdd:PRK15121 86 QTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPP------IRLGEFTLPEHEFVTLPETPLVGVTQS-YSCS-------L 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 169 KAWAN--SEQR-DFSSQF------------GLHHSNPAWVEMDQCRYVACIAIdEPIKYRSVV--NQMVI-PGGLHAVFR 230
Cdd:PRK15121 150 EQISDfrHEMRvQFWRDFlgnaptippvlyGLHETRPSQEKDDEQEVFYTTAL-EPDQADGYVqtGHPVMlQGGEYVMFT 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 515652435 231 LNGR-----------YGELLPQISMV------LEKWLPASGFKQRSTPAYVH 265
Cdd:PRK15121 229 YEGLgtglqefiltvYGTCMPMLNLTrrkgqdIERYYPAEDAKAGDRPINLR 280
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
1-108 |
4.90e-13 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 68.07 E-value: 4.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 1 MSRQHISRINDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAaNQLMFDTSSSVVEIA 80
Cdd:PRK09393 212 VASRESDRLGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARA-RDLLESSALSIDQIA 290
|
90 100
....*....|....*....|....*...
gi 515652435 81 HKCGFSSVSSFSRAFKATFNMSPGEWRK 108
Cdd:PRK09393 291 ERAGFGSEESLRHHFRRRAATSPAAYRK 318
|
|
| PRK11511 |
PRK11511 |
MDR efflux pump AcrAB transcriptional activator MarA; |
1-107 |
5.05e-13 |
|
MDR efflux pump AcrAB transcriptional activator MarA;
Pssm-ID: 236920 [Multi-domain] Cd Length: 127 Bit Score: 64.74 E-value: 5.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 1 MSRQHIS--RINDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLMfDTSSSVVE 78
Cdd:PRK11511 1 MSRRNTDaiTIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLK-ESNEPILY 79
|
90 100
....*....|....*....|....*....
gi 515652435 79 IAHKCGFSSVSSFSRAFKATFNMSPGEWR 107
Cdd:PRK11511 80 LAERYGFESQQTLTRTFKNYFDVPPHKYR 108
|
|
| Cass2 |
pfam14526 |
Integron-associated effector binding protein; This family contains Cass2 from Vibrio cholerae, ... |
140-286 |
7.86e-13 |
|
Integron-associated effector binding protein; This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.
Pssm-ID: 434016 [Multi-domain] Cd Length: 149 Bit Score: 64.69 E-value: 7.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 140 KIVEVSDRMAAYVRHTG------YNRSIRNAWLILKAWANS-EQRDFSSQFGLHHSNPAwvEMDQCRYVACIAIDEPIKY 212
Cdd:pfam14526 1 EIVELPSFTVAGIRYEGpneyedHNKEIGKFWEEFNEDGRLpNIKKDDKSYGIYVDYED--EENEFDYYAGVEVPSFSEL 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515652435 213 RSVVNQMVIPGGLHAVFRLNG----RYGELLPQISmvlEKWLPASGFKQRSTPAYVHYHRNHflnsDEVFELDFYLPV 286
Cdd:pfam14526 79 PEGLVVIEIPGGKYAVFTIEGdfpdAIAEAWTRIY---GWLLPNSGYERAGGPDFEVYKENG----DENMKIELYIPV 149
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
12-108 |
1.90e-12 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 66.21 E-value: 1.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 12 VLFHIHQDISQP-LSAKALSEIAAYSEQHFHRTFkSVVGESLHQYIRRTRMEYAANQLM-FDTSSSVVEIAHKCGFSSVS 89
Cdd:PRK09685 202 VVALIDQSIQEEiLRPEWIAGELGISVRSLYRLF-AEQGLVVAQYIRNRRLDRCADDLRpAADDEKITSIAYKWGFSDSS 280
|
90
....*....|....*....
gi 515652435 90 SFSRAFKATFNMSPGEWRK 108
Cdd:PRK09685 281 HFSTAFKQRFGVSPGEYRR 299
|
|
| PRK15435 |
PRK15435 |
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada; |
18-114 |
8.95e-08 |
|
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;
Pssm-ID: 185333 [Multi-domain] Cd Length: 353 Bit Score: 52.49 E-value: 8.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 18 QDisQPLSAKALSEIAAYSEQHFHRTFKSVVG---ESLHQYIRRTRMEYAANQLMfdtssSVVEIAHKCGFSSVSSFSRA 94
Cdd:PRK15435 96 QE--TPVTLEALADQVAMSPFHLHRLFKATTGmtpKAWQQAWRARRLREALAKGE-----SVTTSILNAGFPDSSSYYRK 168
|
90 100
....*....|....*....|
gi 515652435 95 FKATFNMSPGEWRKHDLQIA 114
Cdd:PRK15435 169 ADETLGMTAKQFRHGGENLA 188
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
7-107 |
2.79e-07 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 50.83 E-value: 2.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 7 SRINDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAANQLMFdTSSSVVEIAHKCGFS 86
Cdd:PRK13503 171 ARLNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRH-SDASVTDIAYRCGFG 249
|
90 100
....*....|....*....|.
gi 515652435 87 SVSSFSRAFKATFNMSPGEWR 107
Cdd:PRK13503 250 DSNHFSTLFRREFSWSPRDIR 270
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
1-108 |
3.74e-07 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 50.59 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 1 MSRQHISRINDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAaNQLMFDTSSSVVEIA 80
Cdd:PRK10371 185 VSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHV-RALLSDTDKSILDIA 263
|
90 100
....*....|....*....|....*...
gi 515652435 81 HKCGFSSVSSFSRAFKATFNMSPGEWRK 108
Cdd:PRK10371 264 LTAGFRSSSRFYSTFGKYVGMSPQQYRK 291
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
70-108 |
5.54e-07 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 45.22 E-value: 5.54e-07
10 20 30
....*....|....*....|....*....|....*....
gi 515652435 70 FDTSSSVVEIAHKCGFSSvSSFSRAFKATFNMSPGEWRK 108
Cdd:pfam00165 5 LSTNLTIADIADELGFSR-SYFSRLFKKYTGVTPSQYRH 42
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
16-57 |
1.23e-06 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 44.45 E-value: 1.23e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 515652435 16 IHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIR 57
Cdd:pfam00165 1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
|
|
| PRK13502 |
PRK13502 |
HTH-type transcriptional activator RhaR; |
20-107 |
1.78e-06 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 48.51 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 20 ISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAanQLMFDTSSSVV-EIAHKCGFSSVSSFSRAFKAT 98
Cdd:PRK13502 189 LECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHA--QYLLQHSPLMIsEISMQCGFEDSNYFSVVFTRE 266
|
....*....
gi 515652435 99 FNMSPGEWR 107
Cdd:PRK13502 267 TGMTPSQWR 275
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
16-117 |
5.41e-06 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 46.82 E-value: 5.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 16 IHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAaNQLMFDTSSSVVEIAHKCGFSSVSSFSRAF 95
Cdd:PRK13501 185 LQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHA-KCLLRGSEHRISDIAARCGFEDSNYFSAVF 263
|
90 100
....*....|....*....|..
gi 515652435 96 KATFNMSPGEWRKHDLQIAEKP 117
Cdd:PRK13501 264 TREAGMTPRDYRQRFIRSPVLP 285
|
|
| YdeE |
COG3708 |
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription] ... |
137-286 |
9.52e-06 |
|
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription];
Pssm-ID: 442922 Cd Length: 157 Bit Score: 44.63 E-value: 9.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 137 PEPKIVEVSD-RMAAYVRHTGYNRSIRNAWlILKAWAN---------SEQRDFSSQFGLHHSnpawVEMD--QCRYVACI 204
Cdd:COG3708 1 MEYRIVEKPAfKLVGLSARTSNSDEEANEE-IPALWQRflpeglaeiPNLSNPGGLYGVCTD----YESDegEFDYLAGV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 205 AIDEPIKYRSVVNQMVIPGGLHAVFRLNGRYGELLPQ-ISMVLEKWLPASGFKQRSTPAYVHYHrNHFLNSDEvFELDFY 283
Cdd:COG3708 76 EVSSFDEVPEGLETLEIPAGTYAVFTHKGPMPEALQEtWQYIYSEWLPSSGYERADGPDFEVYD-ERDDPSPD-SEVEIW 153
|
...
gi 515652435 284 LPV 286
Cdd:COG3708 154 IPI 156
|
|
| PRK13500 |
PRK13500 |
HTH-type transcriptional activator RhaR; |
9-112 |
1.10e-05 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184091 [Multi-domain] Cd Length: 312 Bit Score: 46.25 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 9 INDVLFHIHQDISQPLSAKALSEIAAYSEQHFHRTFKSVVGESLHQYIRRTRMEYAaNQLMFDTSSSVVEIAHKCGFSSV 88
Cdd:PRK13500 208 LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHA-QYLLQHSRLLISDISTECGFEDS 286
|
90 100
....*....|....*....|....
gi 515652435 89 SSFSRAFKATFNMSPGEWRKHDLQ 112
Cdd:PRK13500 287 NYFSVVFTRETGMTPSQWRHLNSQ 310
|
|
| PRK10296 |
PRK10296 |
DNA-binding transcriptional regulator ChbR; Provisional |
24-109 |
1.52e-04 |
|
DNA-binding transcriptional regulator ChbR; Provisional
Pssm-ID: 182362 [Multi-domain] Cd Length: 278 Bit Score: 42.44 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 24 LSAKALSEIAAYSEQHFHRTfksvvgesLHQYIRRTRMEYAANQLMFdTSSSVVEIAHKCGFSSVSSFSRAFKATFNMSP 103
Cdd:PRK10296 197 LSGKSQEYLTRATRRYYGKT--------PMQIINEIRINFAKKQLEM-TNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTP 267
|
....*.
gi 515652435 104 GEWRKH 109
Cdd:PRK10296 268 GSYRKK 273
|
|
| BltR2 |
COG4978 |
GyrI-like small molecule binding domain [Signal transduction mechanisms]; |
139-276 |
1.10e-03 |
|
GyrI-like small molecule binding domain [Signal transduction mechanisms];
Pssm-ID: 444003 Cd Length: 144 Bit Score: 38.44 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 139 PKIVEVSDRMAAYVRHTGYNRSIRNAWLIlkawANSEQRDFSSQFGLHHSNPAWV-----EMDQCRYVACIAIDEPIKYR 213
Cdd:COG4978 1 VEVKELPAQPVASIRATVPMDELGELIGE----AFGELFAYLAENGIEPAGPPFAiyhdtDEDDVDVEVGVPVAGPLPGT 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515652435 214 SVVNQMVIPGGLHAVFRLNGRYGElLPQISMVLEKWLPASGFKQRStPAYVHYHRNHFLNSDE 276
Cdd:COG4978 77 GDIKVGTLPAGKAATATHRGPYDT-LDEAYEALLAWIEENGLEVAG-PPREVYLTDPGNEPDP 137
|
|
| PRK09940 |
PRK09940 |
transcriptional regulator YdeO; Provisional |
16-103 |
6.78e-03 |
|
transcriptional regulator YdeO; Provisional
Pssm-ID: 182157 [Multi-domain] Cd Length: 253 Bit Score: 37.37 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 16 IHQDISQPLSAKALSEIAAYSEQHFHRTFKSVvGESLHQYIRRTRMEYAANqlMFDTSSSVVEIAHKCGFSSVSSFSRAF 95
Cdd:PRK09940 143 VNMKLAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKN--LIRVEGSVNKIAEQCGYASTSYFIYAF 219
|
....*...
gi 515652435 96 KATFNMSP 103
Cdd:PRK09940 220 RKHFGNSP 227
|
|
| PRK15186 |
PRK15186 |
AraC family transcriptional regulator; Provisional |
16-106 |
7.13e-03 |
|
AraC family transcriptional regulator; Provisional
Pssm-ID: 185108 [Multi-domain] Cd Length: 291 Bit Score: 37.35 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515652435 16 IHQDISQPLSAKALSEIAAYSEQHFHRTFKSVvGESLHQYIRRTRMEYAAnQLMFDTSSSVVEIAHKCGFSSVSSFSRAF 95
Cdd:PRK15186 190 IISDISRKWALKDISDSLYMSCSTLKRKLKQE-NTSFSEVYLNARMNKAT-KLLRNSEYNITRVAYMCGYDSASYFTCVF 267
|
90
....*....|.
gi 515652435 96 KATFNMSPGEW 106
Cdd:PRK15186 268 KKHFKTTPSEF 278
|
|
| |
