|
Name |
Accession |
Description |
Interval |
E-value |
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
7-446 |
0e+00 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 743.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 7 SLDFAGDEDFRPLAARMRPETVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVERVSA 86
Cdd:COG2256 3 DAAAEASAANAPLAERMRPRTLDEVVGQEHLLGPGKPLRRAIEAGRLSSMILWGPPGTGKTTLARLIANATDAEFVALSA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 87 VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLT 166
Cdd:COG2256 83 VTSGVKDIREVIEEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNSALLSRCRVFVLK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 167 SLHTDDISLVIRQAIEDKQRGLGDVTADFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNdkGEKAITLQLLAEVAGE 246
Cdd:COG2256 163 PLSEEDLEQLLERALADDERGLGGYKLELDDEALEALARLADGDARRALNALELAVLSAPPD--GVIEITLELVEEALQR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 247 KVARFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMIAAGCDPLYIVRRLLAIASEDIGNADPRAMQVAMSAWDCFTR 326
Cdd:COG2256 241 RALRYDKDGDEHYDLISAFIKSIRGSDPDAALYWLARMLEAGEDPRFIARRLVIMASEDIGLADPQALQIAVAAAQAVER 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 327 IGPAEGERAIAQAVVYLACAPKSNAVYTAWKQALTDAHNLPEYEVPHHLRNAPTTLMKDMGYGQEYRYAHDEPGAYaAGE 406
Cdd:COG2256 321 LGMPEGRIALAQAVIYLATAPKSNAAYLAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPGGY-VGQ 399
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 515656577 407 KYLPPEMGEKQYYFPTKRGLETKIGEKLDYLADLDAKSPQ 446
Cdd:COG2256 400 QYLPDELKGRRYYEPTERGFERKIKERLEKLRKLRRGARE 439
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
18-439 |
0e+00 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 733.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 18 PLAARMRPETVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIA 97
Cdd:PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 98 IEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLHTDDISLVI 177
Cdd:PRK13342 81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 178 RQAIEDKQRGLGDVTadfaDNVLDRLAELVNGDARMSLNYLELLYDMaedndkgEKAITLQLLAEVAGEKVARFDNKGDI 257
Cdd:PRK13342 161 KRALEDKERGLVELD----DEALDALARLANGDARRALNLLELAALG-------VDSITLELLEEALQKRAARYDKDGDE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 258 WYDLISAVHKSIRGSNPDAALYWSARMIAAGCDPLYIVRRLLAIASEDIGNADPRAMQVAMSAWDCFTRIGPAEGERAIA 337
Cdd:PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALA 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 338 QAVVYLACAPKSNAVYTAWKQALTDAHNLPEYEVPHHLRNAPTTLMKDMGYGQEYRYAHDEPGAYaAGEKYLPPEMGEKQ 417
Cdd:PRK13342 310 QAVIYLALAPKSNAAYTAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPNGY-VGQQYLPDELKGKR 388
|
410 420
....*....|....*....|..
gi 515656577 418 YYFPTKRGLETKIGEKLDYLAD 439
Cdd:PRK13342 389 YYEPTERGFEKKIKERLEKLKD 410
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
18-434 |
7.14e-157 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 461.45 E-value: 7.14e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 18 PLAARMRPETVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIA 97
Cdd:PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 98 IEKAREN-KQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLHTDDISLV 176
Cdd:PRK13341 97 VDRAKERlERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 177 IRQAIEDKQRGLGDVTADFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNDKGEKAITLQLLAEVAGEKVARFDNKGD 256
Cdd:PRK13341 177 LKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGD 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 257 IWYDLISAVHKSIRGSNPDAALYWSARMIAAGCDPLYIVRRLLAIASEDIGNADPRAMQVAMSAWDCFTRIGPAEGERAI 336
Cdd:PRK13341 257 AHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPL 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 337 AQAVVYLACAPKSNAVyTAWKQALTDAHNLPEYEVPHHLRNaPTTLMKDMGYGQEYRYAHDEPGAYAAgEKYLPPEMGEK 416
Cdd:PRK13341 337 AQAALYLATAPKSNSV-LGFFDALKKVREEQVQDVPNHLRD-ANRDGKAFGDGVGYRYPHAFRDHWVA-QQYLPEALQGE 413
|
410
....*....|....*...
gi 515656577 417 QYYFPTKRGLETKIGEKL 434
Cdd:PRK13341 414 VFWQPSRQGWEGERRERL 431
|
|
| MgsA_C |
pfam12002 |
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA ... |
271-429 |
4.35e-90 |
|
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication. Additionally, MgsA may play a role in chromosomal segregation. This is consistent with a report that MgsA co-localizes with the replisome and affects chromosome segregation. This domain represents the C terminal region of MgsA.
Pssm-ID: 463426 [Multi-domain] Cd Length: 158 Bit Score: 270.37 E-value: 4.35e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 271 GSNPDAALYWSARMIAAGCDPLYIVRRLLAIASEDIGNADPRAMQVAMSAWDCFTRIGPAEGERAIAQAVVYLACAPKSN 350
Cdd:pfam12002 1 GSDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMPEARIPLAQAVIYLALAPKSN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515656577 351 AVYTAWKQALTDAHNLPEYEVPHHLRNAPTTLMKDMGYGQEYRYAHDEPGAYaAGEKYLPPEMGEKQYYFPTKRGLETK 429
Cdd:pfam12002 81 SAYLAIDAALADVREGGSLPVPLHLRNAPTKLMKKLGYGKGYKYPHDYPNGY-VKQQYLPDELKGRRYYEPTDNGYEKK 158
|
|
| PRK14700 |
PRK14700 |
recombination factor protein RarA; Provisional |
130-435 |
7.69e-72 |
|
recombination factor protein RarA; Provisional
Pssm-ID: 173163 [Multi-domain] Cd Length: 300 Bit Score: 228.74 E-value: 7.69e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 130 LPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLHTDDISLVIRQAIEdKQRGLGDVTADFADNVLDRLAELVNG 209
Cdd:PRK14700 1 MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALS-QDEVLAKHKFKIDDGLYNAMHNYNEG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 210 DARMSLNYLELLYDMAEDNDkgEKAITLQLLAEVAGEKVARFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMIAAGC 289
Cdd:PRK14700 80 DCRKILNLLERMFLISTRGD--EIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 290 DPLYIVRRLLAIASEDIGNADPRAMQVAMSAWDCFTRIGPAEGERAIAQAVVYLACAPKSNAVYTAWKQALTDAHNLPEY 369
Cdd:PRK14700 158 DPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNI 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 370 EVPHHLRNapttlMKDmgygQEYRYAHDEPGAYAAgEKYLPPEMgEKQYYFPTKRGLETKIGEKLD 435
Cdd:PRK14700 238 DVPQHLKN-----YKD----SNYLYPHNYPNSYVI-QQYLPDNI-IQNFYQPTASGFEAKIKTKLD 292
|
|
| AAA_assoc_2 |
pfam16193 |
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA ... |
195-270 |
2.41e-25 |
|
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA domains in proteins ranging from archaeal to fungi, plants and mammals.
Pssm-ID: 465057 Cd Length: 81 Bit Score: 98.69 E-value: 2.41e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 195 FADNVLDRLAELVNGDARMSLNYLELLYDMAEDNDkGEKAITLQLLAEVAGEKVARFDNKGDIWYDLISAVHKSIR 270
Cdd:pfam16193 7 LDDEALEALAELADGDARRALNALELAVLSTPPDD-GGIHITLEILEEALQRKALRYDKDGDEHYDLISAFHKSIR 81
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
56-159 |
1.23e-21 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 89.96 E-value: 1.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 56 MILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENkqagRRTILFVDEVHRFNKSQ--- 125
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGselvskyVGESEKRLRELFEAAKKL----APCVIFIDEIDALAGSRgsg 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 515656577 126 --------QDAFLPHIEDGT-----VTFIGATTEnpSFELNNALLSR 159
Cdd:pfam00004 77 gdsesrrvVNQLLTELDGFTssnskVIVIAATNR--PDKLDPALLGR 121
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
14-243 |
3.67e-17 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 82.61 E-value: 3.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 14 EDFRPLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAA-------------NYANA 79
Cdd:PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHIT---NTLLNAIENNHLAQALLFcGPRGVGKTTCARILArkinqpgyddpneDFSFN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 80 EVERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTENpsFELNNALL 157
Cdd:PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEppAHAIFILATTEK--HKIIPTIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 158 SRARVYKLTSLHTDDISLVIRQaIEDKQrglgdvTADFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNdkgekaITL 237
Cdd:PRK14970 157 SRCQIFDFKRITIKDIKEHLAG-IAVKE------GIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKN------ITR 223
|
....*.
gi 515656577 238 QLLAEV 243
Cdd:PRK14970 224 QAVTEN 229
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
32-159 |
5.15e-16 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.88 E-value: 5.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 32 IGQQHILgpgKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGV---------KDIRIAIEKAR 102
Cdd:cd00009 1 VGQEEAI---EALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDlleglvvaeLFGHFLVRLLF 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515656577 103 ENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--------GTVTFIGATTENPSFELNNALLSR 159
Cdd:cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlridrENVRVIGATNRPLLGDLDRALYDR 142
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
25-336 |
9.98e-16 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 77.92 E-value: 9.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 25 PETVEQYIGQQHILgpgKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE----------------------- 80
Cdd:COG2812 6 PQTFDDVVGQEHVV---RTLKNALASGRLaHAYLFTGPRGVGKTTLARILAKALNCEngptgepcgecescraiaagshp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 -VERVSAVTS--GVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFL-------PHiedgtVTFIGATTEnPsf 150
Cdd:COG2812 83 dVIEIDAEASniGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLktleeppPH-----VVFILATTE-P-- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 151 elnNALL----SRARVYKLTSLHTDDISLVIRQAIEDKQrglgdvtADFADNVLDRLAELVNGDARMSLNYLEllydmae 226
Cdd:COG2812 155 ---QKLLptilSRCQRFDFRRLPPEEIAEHLAKIAEREG-------IEIEPEALALIARAADGSMRDALSLLD------- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 227 dndkgekaitlQLLAEVAGEKVARFDnkgdiwyDLISAVHKsirgSNPDAALYWSARMIAAGCDP-------LYIVRRLL 299
Cdd:COG2812 218 -----------QAIAFGLLDRRELLL-------DLLEALLA----GDVAALLALAEELAKRGRDLkrflddlLSLLRDLL 275
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 515656577 300 AIAS----EDIGNADPRAMQVAMSAwdcftRIGPAEGERAI 336
Cdd:COG2812 276 LLKLgpdaELLVNEDERERLQELAR-----RLSPERLLRAI 311
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
168-245 |
3.88e-15 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 69.97 E-value: 3.88e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515656577 168 LHTDDISLVIRQAIEDKQRGlGDVTADFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNdkGEKAITLQLLAEVAG 245
Cdd:cd18139 1 LSEEDLEKLLKRALEDKERG-GDRKVTIDDEALELLAEAADGDARSALNLLELAVLSAEED--GGIVITLEDLEEVLQ 75
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
23-145 |
3.96e-15 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 72.53 E-value: 3.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 23 MRPETVEQYIGQQHILgpgKPLRRALEAG--------HIhsmILWGPPGTGKTTLAEVAANYANAEVErvsaVTSGVkdi 94
Cdd:pfam05496 1 LRPRTLDEYIGQEKVK---ENLKIFIEAAkqrgealdHV---LLYGPPGLGKTTLANIIANEMGVNIR----ITSGP--- 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515656577 95 riAIEKARE------NKQAGrrTILFVDEVHRFNKSQQDAFLPHIEDGTV--------------------TFIGATT 145
Cdd:pfam05496 68 --AIERPGDlaailtNLEPG--DVLFIDEIHRLNRAVEEILYPAMEDFRLdivigkgpsarsirldlppfTLVGATT 140
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
16-146 |
1.08e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 76.29 E-value: 1.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 16 FRPLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIH-SMILWGPPGTGKTTLAEVAANYANAE-------------- 80
Cdd:PRK08691 3 YQVLARKWRPKTFADLVGQEHVV---KALQNALDEGRLHhAYLLTGTRGVGKTTIARILAKSLNCEnaqhgepcgvcqsc 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515656577 81 -----------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTE 146
Cdd:PRK08691 80 tqidagryvdlLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATTD 158
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
24-219 |
1.35e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 76.01 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 24 RPETVEQYIGQQHILgpgKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE---------------------- 80
Cdd:PRK07133 13 RPKTFDDIVGQDHIV---QTLKNIIKSNKIsHAYLFSGPRGTGKTSVAKIFANALNCShktdllepcqecienvnnsldi 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTEnpSFELNNALLS 158
Cdd:PRK07133 90 IEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEppKHVIFILATTE--VHKIPLTILS 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515656577 159 RARVYKLTSLHTDDIslVIR-QAIEDKQRglgdvtADFADNVLDRLAELVNGDARMSLNYLE 219
Cdd:PRK07133 168 RVQRFNFRRISEDEI--VSRlEFILEKEN------ISYEKNALKLIAKLSSGSLRDALSIAE 221
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
20-174 |
2.58e-14 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 75.20 E-value: 2.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 20 AARMRPETVEQYIGQQHILGPgkpLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYAN-----AEVERVSAVTS---- 89
Cdd:PRK14971 8 ARKYRPSTFESVVGQEALTTT---LKNAIATNKLaHAYLFCGPRGVGKTTCARIFAKTINcqnltADGEACNECEScvaf 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 90 -----------------GVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTEN--- 147
Cdd:PRK14971 85 neqrsyniheldaasnnSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEppSYAIFILATTEKhki 164
|
170 180
....*....|....*....|....*...
gi 515656577 148 -PSfelnnaLLSRARVYKLTSLHTDDIS 174
Cdd:PRK14971 165 lPT------ILSRCQIFDFNRIQVADIV 186
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
16-270 |
1.32e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 73.16 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 16 FRPLAARMRPETVEQYIGQQHIlgpGKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAEVERVS--------- 85
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHV---SRALSSALERGRLHHAYLFtGTRGVGKTTIARILAKCLNCETGVTStpcevcatc 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 86 -AVTSG---------------VKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--VTFIGATTEn 147
Cdd:PRK14960 79 kAVNEGrfidlieidaasrtkVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPehVKFLFATTD- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 148 PSfELNNALLSRARVYKLTSLHTDDISLVIRQAIEDKQrglgdVTADfaDNVLDRLAELVNGDARMSLNylelLYDMAEd 227
Cdd:PRK14960 158 PQ-KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-----IAAD--QDAIWQIAESAQGSLRDALS----LTDQAI- 224
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 515656577 228 nDKGEKAITLQLLAEVAGeKVARfdnkgDIWYDLISAVHKSIR 270
Cdd:PRK14960 225 -AYGQGAVHHQDVKEMLG-LIDR-----TIIYDLILAVHQNQR 260
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
23-223 |
3.31e-13 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 70.16 E-value: 3.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 23 MRPETVEQYIGQQHILgpgKPLRRALEA--------GHIhsmILWGPPGTGKTTLAEVAANyanaEVervsavtsGVKdI 94
Cdd:PRK00080 19 LRPKSLDEFIGQEKVK---ENLKIFIEAakkrgealDHV---LLYGPPGLGKTTLANIIAN----EM--------GVN-I 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 95 RI----AIEKARE------NKQAGrrTILFVDEVHRFNKSQQDAFLPHIEDGTV--------------------TFIGAT 144
Cdd:PRK00080 80 RItsgpALEKPGDlaailtNLEEG--DVLFIDEIHRLSPVVEEILYPAMEDFRLdimigkgpaarsirldlppfTLIGAT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 145 TEnpsfelnNALLS---RAR---VYKLTSLHTDDISLVIRQA-------IEDKQ-------------------------- 185
Cdd:PRK00080 158 TR-------AGLLTsplRDRfgiVQRLEFYTVEELEKIVKRSarilgveIDEEGaleiarrsrgtprianrllrrvrdfa 230
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 515656577 186 --RGLGDVTADFADNVLDRLAELVNGDARMSLNYLELLYD 223
Cdd:PRK00080 231 qvKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIE 270
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
1-145 |
2.81e-12 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 67.41 E-value: 2.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 1 MQLSNYSLDFAGDEDFRPLAArMRPETVEQYIGQQHILgpgKPLRRALEA--------GHIhsmILWGPPGTGKTTLAEV 72
Cdd:COG2255 1 MAEEDRLSSSASEEEDALERS-LRPKRLDEYIGQEKVK---ENLKIFIEAakkrgealDHV---LLYGPPGLGKTTLAHI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 73 AANYANAEVErvsaVTSGVkdiriAIEKARE------NKQAGrrTILFVDEVHRFNKSQQDAFLPHIEDGTV-------- 138
Cdd:COG2255 74 IANEMGVNIR----ITSGP-----AIEKPGDlaailtNLEEG--DVLFIDEIHRLSRVVEEILYPAMEDFRLdivigkgp 142
|
170
....*....|....*....
gi 515656577 139 ------------TFIGATT 145
Cdd:COG2255 143 aarsirldlppfTLVGATT 161
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
44-221 |
4.01e-12 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 66.54 E-value: 4.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 44 LRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE-----------------------VERVSAV----TSGVKDIR 95
Cdd:COG0470 8 LLAAAESGRLpHALLLHGPPGIGKTTLALALARDLLCEnpeggkacgqchsrlmaagnhpdLLELNPEeksdQIGIDQIR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 96 IAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIgATTENPSfELNNALLSRARVYKLTSLHTDDI 173
Cdd:COG0470 88 ELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEppKNTPFI-LIANDPS-RLLPTIRSRCQVIRFRPPSEEEA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 515656577 174 SLVIRQaiedkqrglgdvtADFADNVLDRLAELVNGDARMSLNYLELL 221
Cdd:COG0470 166 LAWLRE-------------EGVDEDALEAILRLAGGDPRAAINLLQAL 200
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
22-173 |
7.52e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 64.09 E-value: 7.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 22 RMRPETVEQYIGQQHIlgpGKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYAN---------AEVERVSAVTSG- 90
Cdd:PRK14963 7 RARPITFDEVVGQEHV---KEVLLAALRQGRLgHAYLFSGPRGVGKTTTARLIAMAVNcsgedpkpcGECESCLAVRRGa 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 91 --------------VKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTEnPSfELNN 154
Cdd:PRK14963 84 hpdvleidaasnnsVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEppEHVIFILATTE-PE-KMPP 161
|
170
....*....|....*....
gi 515656577 155 ALLSRARVYKLTSLHTDDI 173
Cdd:PRK14963 162 TILSRTQHFRFRRLTEEEI 180
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
27-159 |
8.10e-11 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 62.70 E-value: 8.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 27 TVEQYIGQQHILgpgKPLRRALEAGHIHS-----MILWGPPGTGKTTLAEVAANYANAEVErvsaVTSGVkdiriAIEKA 101
Cdd:TIGR00635 2 LLAEFIGQEKVK---EQLQLFIEAAKMRQealdhLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGP-----ALEKP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 102 RE------NKQAGrrTILFVDEVHRFNKSQQDAFLPHIEDGTV--------------------TFIGATTEnpSFELNNA 155
Cdd:TIGR00635 70 GDlaailtNLEEG--DVLFIDEIHRLSPAVEELLYPAMEDFRLdivigkgpsarsvrldlppfTLVGATTR--AGMLTSP 145
|
....
gi 515656577 156 LLSR 159
Cdd:TIGR00635 146 LRDR 149
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
22-146 |
1.42e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 63.29 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 22 RMRPETVEQYIGQQHILgpgKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE-------------------- 80
Cdd:PRK14950 9 KWRSQTFAELVGQEHVV---QTLRNAIAEGRVaHAYLFTGPRGVGKTSTARILAKAVNCTtndpkgrpcgtcemcraiae 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515656577 81 ------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--VTFIGATTE 146
Cdd:PRK14950 86 gsavdvIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPphAIFILATTE 159
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
44-159 |
1.44e-10 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 62.62 E-value: 1.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 44 LRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVERV--SAVTSG-----VKDIRIAIEKARENKQAgrrtILFVD 116
Cdd:COG0464 182 LREEYGLPPPRGLLLYGPPGTGKTLLARALAGELGLPLIEVdlSDLVSKyvgetEKNLREVFDKARGLAPC----VLFID 257
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 117 EV-----------HRFNKSQQDAFLPHIEDGT--VTFIGATteNPSFELNNALLSR 159
Cdd:COG0464 258 EAdalagkrgevgDGVGRRVVNTLLTEMEELRsdVVVIAAT--NRPDLLDPALLRR 311
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
24-279 |
1.68e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 62.86 E-value: 1.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 24 RPETVEQYIGQQHIlgpGKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE---------------------- 80
Cdd:PRK14962 9 RPKTFSEVVGQDHV---KKLIINALKKNSIsHAYIFAGPRGTGKTTVARILAKSLNCEnrkgvepcnecracrsidegtf 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 ---VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTeNPSfELNNA 155
Cdd:PRK14962 86 mdvIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEppSHVVFVLATT-NLE-KVPPT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 156 LLSRARVYKLTSLHTDDISLVIRQAIEDKqrglgdvTADFADNVLDRLAELVNGDARMSLNYLELLYDMAedndkgEKAI 235
Cdd:PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEAE-------GIEIDREALSFIAKRASGGLRDALTMLEQVWKFS------EGKI 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 515656577 236 TLQLLAEVAG----EKVARFDN---KGDI--WYDLISAVHKSirGSNPDAALY 279
Cdd:PRK14962 231 TLETVHEALGlipiEVVRDYINaifNGDVkrVFTVLDDVYYS--GKDYEVLIQ 281
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
15-146 |
1.79e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 62.84 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 15 DFRPLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAEvERVSAVTSGVKD 93
Cdd:PRK14969 2 SYQVLARKWRPKSFSELVGQEHVV---RALTNALEQQRLHHAYLFtGTRGVGKTTLARILAKSLNCE-TGVTATPCGVCS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 94 IRIAIEKAR----------------------ENKQ----AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATT 145
Cdd:PRK14969 78 ACLEIDSGRfvdlievdaasntqvdamrellDNAQyaptRGRFKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATT 157
|
.
gi 515656577 146 E 146
Cdd:PRK14969 158 D 158
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
15-228 |
2.63e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 61.75 E-value: 2.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 15 DFRPLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIH-SMILWGPPGTGKTTLAEVAANYANAE------------- 80
Cdd:PRK14961 2 NYQILARKWRPQYFRDIIGQKHIV---TAISNGLSLGRIHhAWLLSGTRGVGKTTIARLLAKSLNCQngitsnpcrkcii 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 ------------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--VTFIGATTE 146
Cdd:PRK14961 79 ckeiekglcldlIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPqhIKFILATTD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 147 NPsfELNNALLSRARVYKLTSLHTDDISLVIRQAIEDKQrglgdvtADFADNVLDRLAELVNGDARMSLNYLELLYDMAE 226
Cdd:PRK14961 159 VE--KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-------IDTDEYALKLIAYHAHGSMRDALNLLEHAINLGK 229
|
..
gi 515656577 227 DN 228
Cdd:PRK14961 230 GN 231
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
18-251 |
7.04e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 60.99 E-value: 7.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 18 PLAARMRPETVEQYIGQQHilgPGKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANA----------------E 80
Cdd:PRK14953 5 PFARKYRPKFFKEVIGQEI---VVRILKNAVKLQRVsHAYIFAGPRGTGKTTIARILAKVLNClnpqegepcgkcencvE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 VERVS---------AVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED---GTVtFIGATTEnp 148
Cdd:PRK14953 82 IDKGSfpdlieidaASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEpppRTI-FILCTTE-- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 149 SFELNNALLSRARVYKLTSLHTDDISLVIRQAIEDKQrglgdvtADFADNVLDRLAELVNGDARMSLNYLELLYDMAEDN 228
Cdd:PRK14953 159 YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-------IEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGK 231
|
250 260
....*....|....*....|...
gi 515656577 229 DKgeKAITLQLLAEVAGEKVARF 251
Cdd:PRK14953 232 VT--IKVVEEFLGIVSQESVRKF 252
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
54-163 |
8.23e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.00 E-value: 8.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 54 HSMILWGPPGTGKTTLAEVAANYANAEVERVSAV------------------------TSGVKDIRIAIEKARENKQAgr 109
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgedileevldqllliivggkkasGSGELRLRLALALARKLKPD-- 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515656577 110 rtILFVDEVHRFNKSQQDAFL----------PHIEDGTVTFIGATT-ENPSFELNNALLSRARVY 163
Cdd:smart00382 81 --VLILDEITSLLDAEQEALLllleelrlllLLKSEKNLTVILTTNdEKDLGPALLRRRFDRRIV 143
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
16-278 |
8.77e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 60.87 E-value: 8.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 16 FRPLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAE-------------- 80
Cdd:PRK14957 3 YQALARKYRPQSFAEVAGQQHAL---NSLVHALETQKVHHAYLFtGTRGVGKTTLGRLLAKCLNCKtgvtaepcnkcenc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 -----------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--VTFIGATTEN 147
Cdd:PRK14957 80 vainnnsfidlIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPeyVKFILATTDY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 148 PSFELnnALLSRARVYKLTSLHTDDISLVIRQAIEDKqrglgDVTADfaDNVLDRLAELVNGDARMSLNylelLYDMAED 227
Cdd:PRK14957 160 HKIPV--TILSRCIQLHLKHISQADIKDQLKIILAKE-----NINSD--EQSLEYIAYHAKGSLRDALS----LLDQAIS 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 515656577 228 NDKGE--KAITLQLLAEVAGEKVarfdnkgdiwYDLISAvhksIRGSNPDAAL 278
Cdd:PRK14957 227 FCGGElkQAQIKQMLGIIDSEEV----------YSIINA----IIDNDPKAIL 265
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
45-162 |
1.35e-09 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 56.52 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 45 RRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDE 117
Cdd:cd19481 18 LRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLssllskyVGESEKNLRKIFERARRLAPC----ILFIDE 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515656577 118 VHRFNKSQQD------------AFLPHIEDGT----VTFIGATteNPSFELNNALLSRARV 162
Cdd:cd19481 94 IDAIGRKRDSsgesgelrrvlnQLLTELDGVNsrskVLVIAAT--NRPDLLDPALLRPGRF 152
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
24-268 |
1.35e-09 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 59.93 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 24 RPETVEQYIGQQHILgpgKPLRRALEA---GHIH-SMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDI--RIA 97
Cdd:PRK04195 9 RPKTLSDVVGNEKAK---EQLREWIESwlkGKPKkALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVieRVA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 98 IEKARENKQAG-RRTILFVDEVhrfnksqqDAFLPHIEDGTVTFIG---ATTENP---------SFELNNaLLSRARVYK 164
Cdd:PRK04195 86 GEAATSGSLFGaRRKLILLDEV--------DGIHGNEDRGGARAILeliKKAKQPiiltandpyDPSLRE-LRNACLMIE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 165 LTSLHTDDISLVIRQAIedKQRGLgdvtaDFADNVLDRLAELVNGDARMSLNYLELLydmAEdndkGEKAITLQLLAEVA 244
Cdd:PRK04195 157 FKRLSTRSIVPVLKRIC--RKEGI-----ECDDEALKEIAERSGGDLRSAINDLQAI---AE----GYGKLTLEDVKTLG 222
|
250 260
....*....|....*....|....
gi 515656577 245 GEkvarfDNKGDIWyDLISAVHKS 268
Cdd:PRK04195 223 RR-----DREESIF-DALDAVFKA 240
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
18-240 |
1.39e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 60.08 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 18 PLAARMRPETVEQYIGQQHIlgpGKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAE----------VERVSA 86
Cdd:PRK14959 5 SLTARYRPQTFAEVAGQETV---KAILSRAAQENRVAPAYLFsGTRGVGKTTIARIFAKALNCEtaptgepcntCEQCRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 87 VTSG--VKDIRI------AIEKARENKQA-------GRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTENPS 149
Cdd:PRK14959 82 VTQGmhVDVVEIdgasnrGIDDAKRLKEAigyapmeGRYKVFIIDEAHMLTREAFNALLKTLEEppARVTFVLATTEPHK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 150 FELnnALLSRARVYKLTSLHTDD--------------------ISLVIRQA---IEDKQRGLGDVTADFADNVLDRLAEL 206
Cdd:PRK14959 162 FPV--TIVSRCQHFTFTRLSEAGleahltkvlgregvdydpaaVRLIARRAagsVRDSMSLLGQVLALGESRLTIDGARG 239
|
250 260 270
....*....|....*....|....*....|....
gi 515656577 207 VNGDARMSLnYLELLYDMAEDNDKGEKAITLQLL 240
Cdd:PRK14959 240 VLGLAGQEL-FLRLMEALAAQDCLGVANVVRELL 272
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
19-146 |
3.04e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 58.80 E-value: 3.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHILGPgkpLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE----------------- 80
Cdd:PRK14956 8 LSRKYRPQFFRDVIHQDLAIGA---LQNALKSGKIgHAYIFFGPRGVGKTTIARILAKRLNCEnpignepcnectsclei 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 81 --------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTE 146
Cdd:PRK14956 85 tkgissdvLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEppAHIVFILATTE 160
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
19-146 |
3.60e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 58.98 E-value: 3.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHIlgpGKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE----------------- 80
Cdd:PRK14965 6 LARKYRPQTFSDLTGQEHV---SRTLQNAIDTGRVaHAFLFTGARGVGKTSTARILAKALNCEqgltaepcnvcppcvei 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 81 --------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--VTFIGATTE 146
Cdd:PRK14965 83 tegrsvdvFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPphVKFIFATTE 158
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
22-164 |
5.93e-09 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 57.31 E-value: 5.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 22 RMRPETVEQYIGQQHIlgpGKPLRRALEAGHIHSMILWGP-PGTGKTTLAEVAANYANAEVERVSAVTSGVKDIR-IAIE 99
Cdd:PHA02544 14 KYRPSTIDECILPAAD---KETFKSIVKKGRIPNMLLHSPsPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRnRLTR 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515656577 100 KARENKQAGRRTILFVDEVHRfnksqqdAFLPHIEDGTVTFIGATTENPSFEL--NN------ALLSRARVYK 164
Cdd:PHA02544 91 FASTVSLTGGGKVIIIDEFDR-------LGLADAQRHLRSFMEAYSKNCSFIItaNNkngiiePLRSRCRVID 156
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
19-278 |
6.70e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 57.82 E-value: 6.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAE----------------- 80
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVV---RALSNALDQQYLHHAYLFtGTRGVGKTTISRILAKCLNCEkgvsanpcndcencrei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 --------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTENpsF 150
Cdd:PRK14958 83 degrfpdlFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEppSHVKFILATTDH--H 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 151 ELNNALLSRARVYKLTSLHTDDISLVIRQAIEDKQrglgdvtADFADNVLDRLAELVNGDARMSLNYLE----------L 220
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-------VEFENAALDLLARAANGSVRDALSLLDqsiaygngkvL 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 221 LYDMAEDNDKGEKAI---TLQLLAEVAGEK----VARFDNKG----DIWYDLISAVHK-SIRGSNPDAAL 278
Cdd:PRK14958 234 IADVKTMLGTIEPLLlfdILEALAAKAGDRllgcVTRLVEQGvdfsNALADLLSLLHQiAIIQTVPEALI 303
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
16-243 |
9.39e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 57.65 E-value: 9.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 16 FRPLAARMRPETVEQYIGQQHILGPgkpLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE-------------- 80
Cdd:PRK14954 3 YQVIARKYRPSKFADITAQEHITHT---IQNSLRMDRVgHGYIFSGLRGVGKTTAARVFAKAVNCQrmiddpvylqevte 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 -------------------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVT 139
Cdd:PRK14954 80 pcgecescrdfdagtslniSEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEppPHAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 140 FIGATTEnpSFELNNALLSRARVYKLTSLHTDDISLVIRQAIEDKqrglgDVTADfaDNVLDRLAELVNGDARMSLNYLE 219
Cdd:PRK14954 160 FIFATTE--LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAE-----GIQID--ADALQLIARKAQGSMRDAQSILD 230
|
250 260
....*....|....*....|....
gi 515656577 220 LLYDMAEDNDkGEKAITLQLLAEV 243
Cdd:PRK14954 231 QVIAFSVGSE-AEKVIAYQGVAEL 253
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
24-146 |
2.89e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 56.03 E-value: 2.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 24 RPETVEQYIGQQHILgpgKPLRRALEAGHI-HSMILWGPPGTGKTTLAEV---AANYANA-------EVERVSAVTSG-- 90
Cdd:PRK05563 11 RPQTFEDVVGQEHIT---KTLKNAIKQGKIsHAYLFSGPRGTGKTSAAKIfakAVNCLNPpdgepcnECEICKAITNGsl 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 91 -------------VKDIRIAIEKARENKQAGRRTILFVDEVHR-----FNksqqdAFLPHIEDGT--VTFIGATTE 146
Cdd:PRK05563 88 mdvieidaasnngVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMlstgaFN-----ALLKTLEEPPahVIFILATTE 158
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
19-146 |
2.91e-08 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 56.04 E-value: 2.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHILGpgkPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE----------------- 80
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTE---PLSSALDAGRInHAYLFSGPRGCGKTSSARILARSLNCAqgptatpcgvcescval 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515656577 81 ----------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTE 146
Cdd:PRK14952 80 apngpgsidvVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEppEHLIFIFATTE 157
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
19-159 |
9.26e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 54.27 E-value: 9.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHIlgpGKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE----------------- 80
Cdd:PRK08451 4 LALKYRPKHFDELIGQESV---SKTLSLALDNNRLaHAYLFSGLRGSGKTSSARIFARALVCEqgpsstpcdtciqcqsa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 --------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTEnpSF 150
Cdd:PRK08451 81 lenrhidiIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEppSYVKFILATTD--PL 158
|
....*....
gi 515656577 151 ELNNALLSR 159
Cdd:PRK08451 159 KLPATILSR 167
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
16-243 |
9.62e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 53.74 E-value: 9.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 16 FRPLAARMRPETVEQYIGQQHILGPgkpLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE-------------- 80
Cdd:PRK14955 3 YQVIARKYRPKKFADITAQEHITRT---IQNSLRMGRVgHGYIFSGLRGVGKTTAARVFAKAVNCQrmiddadylqevte 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 -------------------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--VT 139
Cdd:PRK14955 80 pcgecescrdfdagtslniSEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPphAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 140 FIGATTEnpSFELNNALLSRARVYKLTSLHTDDISLVIRQAIEDKQrglgdVTADfaDNVLDRLAELVNGDARMSLNYLE 219
Cdd:PRK14955 160 FIFATTE--LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-----ISVD--ADALQLIGRKAQGSMRDAQSILD 230
|
250 260
....*....|....*....|....
gi 515656577 220 LLYDMAEDNDkGEKAITLQLLAEV 243
Cdd:PRK14955 231 QVIAFSVESE-GEGSIRYDKVAEL 253
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
18-245 |
1.06e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 54.09 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 18 PLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE---------------- 80
Cdd:PRK06645 10 PFARKYRPSNFAELQGQEVLV---KVLSYTILNDRLaGGYLLTGIRGVGKTTSARIIAKAVNCSalitenttiktceqct 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 -------------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATT 145
Cdd:PRK06645 87 ncisfnnhnhpdiIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEppPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 146 ENPSFELnnALLSRARVYKLTSLHTDDIsLVIRQAIEDKQRGLGDVTAdfadnvLDRLAELVNGDARMSLNYLELLYDMA 225
Cdd:PRK06645 167 EVQKIPA--TIISRCQRYDLRRLSFEEI-FKLLEYITKQENLKTDIEA------LRIIAYKSEGSARDAVSILDQAASMS 237
|
250 260
....*....|....*....|
gi 515656577 226 EDNDkgeKAITLQLLAEVAG 245
Cdd:PRK06645 238 AKSD---NIISPQVINQMLG 254
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
54-159 |
1.29e-07 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 52.58 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 54 HSMILWGPPGTGKTTLAEVAANYAN---AEVERVSAVTS----GVKDIRIAIEKAREnkqagRRTILFVDEVHRFNKS-- 124
Cdd:COG1223 36 RKILFYGPPGTGKTMLAEALAGELKlplLTVRLDSLIGSylgeTARNLRKLFDFARR-----APCVIFFDEFDAIAKDrg 110
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 515656577 125 -QQD---------AFLPHIED--GTVTFIGATteNPSFELNNALLSR 159
Cdd:COG1223 111 dQNDvgevkrvvnALLQELDGlpSGSVVIAAT--NHPELLDSALWRR 155
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
19-215 |
3.05e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 52.96 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAE----------------- 80
Cdd:PRK12323 6 LARKWRPRDFTTLVGQEHVV---RALTHALEQQRLHHAYLFtGTRGVGKTTLSRILAKSLNCTgadgeggitaqpcgqcr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 81 -------------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATT 145
Cdd:PRK12323 83 acteidagrfvdyIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEppEHVKFILATT 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 146 ENPSFELnnALLSRARVYKLTSLHTDDIslvirqaIEDKQRGLGDVTADFADNVLDRLAELVNGDARMSL 215
Cdd:PRK12323 163 DPQKIPV--TVLSRCLQFNLKQMPPGHI-------VSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDAL 223
|
|
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
10-71 |
3.31e-07 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 52.35 E-value: 3.31e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515656577 10 FAGDEDFRPLAARMRPETVEQY------IGQQHIlgpgkplRRALE---AGHiHSMILWGPPGTGKTTLAE 71
Cdd:COG0606 167 LRGEQPLPPAEPDAPPAEPPYEpdladvKGQEQA-------KRALEiaaAGG-HNLLMIGPPGSGKTMLAR 229
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
55-159 |
3.52e-07 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 49.21 E-value: 3.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 55 SMILWGPPGTGKTTLAE-VAANYANAEVERV--SAVTSgVKDIRIAIEKAREN--------KQAGRRT-ILFVDEVHRFN 122
Cdd:pfam07728 1 GVLLVGPPGTGKTELAErLAAALSNRPVFYVqlTRDTT-EEDLFGRRNIDPGGaswvdgplVRAAREGeIAVLDEINRAN 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 515656577 123 KSQQDAFLP-------HIEDGT---------VTFIGATTENPS--FELNNALLSR 159
Cdd:pfam07728 80 PDVLNSLLSllderrlLLPDGGelvkaapdgFRLIATMNPLDRglNELSPALRSR 134
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
16-146 |
3.67e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 52.47 E-value: 3.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 16 FRPLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAANYANAE-------------- 80
Cdd:PRK06647 3 YRGTATKRRPRDFNSLEGQDFVV---ETLKHSIESNKIaNAYIFSGPRGVGKTSSARAFARCLNCVngptpmpcgecssc 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515656577 81 -----------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTE 146
Cdd:PRK06647 80 ksidndnsldvIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEppPYIVFIFATTE 158
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
19-159 |
3.87e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 52.08 E-value: 3.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQ---HILGPGKPLRRAleaghIHSMILWGPPGTGKTTLAEVAANYAN--------------AEV 81
Cdd:PRK06305 7 SSRKYRPQTFSEILGQDavvAVLKNALRFNRA-----AHAYLFSGIRGTGKTTLARIFAKALNcqnptedqepcnqcASC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 82 ERVSAVTS------------GVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTEN 147
Cdd:PRK06305 82 KEISSGTSldvleidgashrGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEppQHVKFFLATTEI 161
|
170
....*....|..
gi 515656577 148 psFELNNALLSR 159
Cdd:PRK06305 162 --HKIPGTILSR 171
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
57-118 |
3.93e-07 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 50.03 E-value: 3.93e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515656577 57 ILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDEV 118
Cdd:cd19502 41 LLYGPPGTGKTLLAKAVANHTDATFIRVVGselvqkyIGEGARLVRELFEMAREKAPS----IIFIDEI 105
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
16-146 |
3.96e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 52.21 E-value: 3.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 16 FRPLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHI-HSMILWGPPGTGKTTLAEVAA---NYANAEV---------- 81
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMV---RTLTNAFETGRIaQAFMLTGVRGVGKTTTARILAralNYEGPDGdggptidlcg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 82 -----------------ERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFL-------PHiedgt 137
Cdd:PRK09111 88 vgehcqaimegrhvdvlEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLktleeppPH----- 162
|
....*....
gi 515656577 138 VTFIGATTE 146
Cdd:PRK09111 163 VKFIFATTE 171
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
55-163 |
6.77e-07 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 48.89 E-value: 6.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 55 SMILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDEV--------- 118
Cdd:cd19509 34 GILLYGPPGTGKTLLARAVASESGSTFFSISAsslvskwVGESEKIVRALFALARELQPS----IIFIDEIdsllsergs 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 515656577 119 --HRFNKSQQDAFL------PHIEDGTVTFIGATteNPSFELNNALLSR--ARVY 163
Cdd:cd19509 110 geHEASRRVKTEFLvqmdgvLNKPEDRVLVLGAT--NRPWELDEAFLRRfeKRIY 162
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
57-118 |
7.09e-07 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 48.83 E-value: 7.09e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515656577 57 ILWGPPGTGKTTLAEVAANYANAEVERVS--AVTSGV-----KDIRIAIEKARENKQAgrrtILFVDEV 118
Cdd:cd19503 38 LLHGPPGTGKTLLARAVANEAGANFLSISgpSIVSKYlgeseKNLREIFEEARSHAPS----IIFIDEI 102
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
19-174 |
7.71e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 51.65 E-value: 7.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAEvERVSAVTSGVKD--IR 95
Cdd:PRK14949 6 LARKWRPATFEQMVGQSHVL---HALTNALTQQRLHHAYLFtGTRGVGKTSLARLFAKGLNCE-QGVTATPCGVCSscVE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 96 IA-------IE----------KARE---NKQ----AGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--VTFIGATTEnPS 149
Cdd:PRK14949 82 IAqgrfvdlIEvdaasrtkvdDTRElldNVQyrpsRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPehVKFLLATTD-PQ 160
|
170 180
....*....|....*....|....*
gi 515656577 150 fELNNALLSRARVYKLTSLHTDDIS 174
Cdd:PRK14949 161 -KLPVTVLSRCLQFNLKSLTQDEIG 184
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
19-146 |
1.21e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 50.55 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAA----------------------- 74
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLV---RILRNAFTLNKIPQSILLvGASGVGKTTCARIISlclncsngptsdpcgtchncisi 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 75 -NYANAEV-ERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTE 146
Cdd:PRK14964 80 kNSNHPDViEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEpaPHVKFILATTE 155
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
54-117 |
2.60e-06 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 49.23 E-value: 2.60e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515656577 54 HSMILWGPPGTGKTTLAEVAANYANAEVERV--SAVTS-----GVKDIRIAIEKARENkqagRRTILFVDE 117
Cdd:COG1222 113 KGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgSELVSkyigeGARNVREVFELAREK----APSIIFIDE 179
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
57-118 |
2.63e-06 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 47.61 E-value: 2.63e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515656577 57 ILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKqagrRTILFVDEV 118
Cdd:cd19501 41 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGsdfvemfVGVGASRVRDLFEQAKKNA----PCIVFIDEI 105
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
18-222 |
4.94e-06 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 48.19 E-value: 4.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 18 PLAARMRPETVEQYIGQQHILGPgkpLRRALEAGHIHSMILWGPPGTGKTT----LAE--VAANYANAEVERVSAVTSGV 91
Cdd:PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSR---LQVIARDGNMPNLILSGPPGTGKTTsilaLAHelLGPNYKEAVLELNASDDRGI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 92 KDIRIAIEKARENK---QAGRRTILFVDEVHRFNKSQQDAFLPHIE--DGTVTFigATTENPSFELNNALLSRARVYKLT 166
Cdd:PLN03025 79 DVVRNKIKMFAQKKvtlPPGRHKIVILDEADSMTSGAQQALRRTMEiySNTTRF--ALACNTSSKIIEPIQSRCAIVRFS 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 167 SLHTDDISLVIRQAIEDKQrglgdVTadFADNVLDRLAELVNGDARMSLNYLELLY 222
Cdd:PLN03025 157 RLSDQEILGRLMKVVEAEK-----VP--YVPEGLEAIIFTADGDMRQALNNLQATH 205
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
56-118 |
2.58e-05 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 44.41 E-value: 2.58e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 56 MILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQagrrTILFVDEV 118
Cdd:cd19529 30 ILLYGPPGTGKTLLAKAVATESNANFISVKGpellskwVGESEKAIREIFRKARQVAP----CVIFFDEI 95
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
32-139 |
2.63e-05 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 45.22 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 32 IGQQHIlgpgkplRRALE---AGHiHSMILWGPPGTGKTTLA----------------EVAANYANAEVER--------- 83
Cdd:pfam01078 6 KGQEQA-------KRALEiaaAGG-HNLLMIGPPGSGKTMLAkrlpgilpplteaealEVTAIHSVAGLGGdgglirrrp 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 84 ----------VSAVTSGVKDIRIAIEKArenkqagRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 139
Cdd:pfam01078 78 fraphhsasaAALVGGGSIPRPGEISLA-------HNGVLFLDELPEFKRRVLESLRQPLEDGEIT 136
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
19-146 |
3.66e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.38 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAE----------------- 80
Cdd:PRK07003 6 LARKWRPKDFASLVGQEHVV---RALTHALDGGRLHHAYLFtGTRGVGKTTLSRIFAKALNCEtgvtsqpcgvcracrei 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515656577 81 --------VERVSAVTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--VTFIGATTE 146
Cdd:PRK07003 83 degrfvdyVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPphVKFILATTD 158
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
57-118 |
4.04e-05 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 45.52 E-value: 4.04e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515656577 57 ILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDEV 118
Cdd:PTZ00454 183 LLYGPPGTGKTMLAKAVAHHTTATFIRVVGsefvqkyLGEGPRMVRDVFRLARENAPS----IIFIDEV 247
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
57-118 |
5.05e-05 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 43.43 E-value: 5.05e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515656577 57 ILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDEV 118
Cdd:cd19511 31 LLYGPPGCGKTLLAKALASEAGLNFISVKGpelfskyVGESERAVREIFQKARQAAPC----IIFFDEI 95
|
|
| RecA-like_spastin |
cd19524 |
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ... |
56-163 |
6.38e-05 |
|
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410932 [Multi-domain] Cd Length: 164 Bit Score: 43.30 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 56 MILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQagrrTILFVDEV---------- 118
Cdd:cd19524 36 LLLFGPPGNGKTMLAKAVAAESNATFFNISAasltskyVGEGEKLVRALFAVARELQP----SIIFIDEVdsllserseg 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 515656577 119 -HRFNKSQQDAFLPHIE------DGTVTFIGATteNPSFELNNALLSR--ARVY 163
Cdd:cd19524 112 eHEASRRLKTEFLIEFDgvqsngDDRVLVMGAT--NRPQELDDAVLRRftKRVY 163
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
44-244 |
6.61e-05 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 44.17 E-value: 6.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 44 LRRALEAGHIHS--MILWGPPGTGKT-TLAEVAANYANAEVERVSAvTSGVKDIRIAIEKARENKQAGRRTI-------- 112
Cdd:COG2842 39 FAEALDEARALPgiGVVYGESGVGKTtAAREYANRNPNVIYVTASP-SWTSKELLEELAEELGIPAPPGTIAdlrdrile 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 113 --------LFVDEVHRFNKsQQDAFLPHIEDGT---VTFIGatteNPSFElnnALLSR-ARVY-------KLTSLHTDDI 173
Cdd:COG2842 118 rlagtgrlLIIDEADHLKP-KALEELRDIHDETgvgVVLIG----MERLP---AKLKRyEQLYsrigfwvEFKPLSLEDV 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515656577 174 SLVIRQaiedkqrgLGDVTadfADNVLDRLAELVNGDARMSLNYLELLYDMAEDNdkGEKAITLQLLAEVA 244
Cdd:COG2842 190 RALAEA--------WGELT---DPDLLELLHRITRGNLRRLDRTLRLAARAAKRN--GLTKITLDHVRAAA 247
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
58-118 |
1.08e-04 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 44.44 E-value: 1.08e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515656577 58 LWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDEV 118
Cdd:PRK03992 170 LYGPPGTGKTLLAKAVAHETNATFIRVVGselvqkfIGEGARLVRELFELAREKAPS----IIFIDEI 233
|
|
| RecA-like_VPS4 |
cd19521 |
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ... |
56-118 |
1.29e-04 |
|
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410929 [Multi-domain] Cd Length: 170 Bit Score: 42.54 E-value: 1.29e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 56 MILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQagrrTILFVDEV 118
Cdd:cd19521 43 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSsdlvskwMGESEKLVKQLFAMARENKP----SIIFIDEV 108
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
24-246 |
1.33e-04 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 43.82 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 24 RPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAA------NYAN------------------A 79
Cdd:PRK12402 10 RPALLEDILGQDEVV---ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALArelygdPWENnftefnvadffdqgkkylV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 80 EVERVSAVTSGVKDIR---IAIEKARENKQAGRR-------TILFvDEVHRFNKSQQDAFLPHIE--DGTVTFIGATTeN 147
Cdd:PRK12402 87 EDPRFAHFLGTDKRIRsskIDNFKHVLKEYASYRplsadykTILL-DNAEALREDAQQALRRIMEqySRTCRFIIATR-Q 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 148 PSfELNNALLSRARVYKLTSLHTDDISLVIRQAIEDKQrglgdvtADFADNVLDRLAELVNGDARMSLNYLELlydMAED 227
Cdd:PRK12402 165 PS-KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG-------VDYDDDGLELIAYYAGGDLRKAILTLQT---AALA 233
|
250
....*....|....*....
gi 515656577 228 ndkgEKAITLQLLAEVAGE 246
Cdd:PRK12402 234 ----AGEITMEAAYEALGD 248
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
56-137 |
1.90e-04 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 42.04 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 56 MILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDEVhrfnksqqDA 128
Cdd:cd19519 37 ILLYGPPGTGKTLIARAVANETGAFFFLINGpeimsklAGESESNLRKAFEEAEKNAPA----IIFIDEI--------DA 104
|
....*....
gi 515656577 129 FLPHIEDGT 137
Cdd:cd19519 105 IAPKREKTH 113
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
57-118 |
3.20e-04 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 42.84 E-value: 3.20e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515656577 57 ILWGPPGTGKTTLAEVAANYANAEVERVsaVTS---------GVKDIRIAIEKARENKQAgrrtILFVDEV 118
Cdd:PTZ00361 221 ILYGPPGTGKTLLAKAVANETSATFLRV--VGSeliqkylgdGPKLVRELFRVAEENAPS----IVFIDEI 285
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
24-118 |
3.50e-04 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 41.24 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 24 RPETVEQYIGQqhilgpgKPLRraleaghihSMILWGPPGTGKTTLAEVAANYANAEVERVSA--VTSGV-----KDIRI 96
Cdd:cd19518 21 LPPEYFQHLGV-------EPPR---------GVLLHGPPGCGKTMLANAIAGELKVPFLKISAteIVSGVsgeseEKIRE 84
|
90 100
....*....|....*....|..
gi 515656577 97 AIEKARENKQAgrrtILFVDEV 118
Cdd:cd19518 85 LFDQAISNAPC----IVFIDEI 102
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
22-70 |
3.92e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 3.92e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 515656577 22 RMRPETVEQYIGQQHILGpgkPLRRALEAGHIHSMILW-GPPGTGKTTLA 70
Cdd:PRK07764 8 RYRPATFAEVIGQEHVTE---PLSTALDSGRINHAYLFsGPRGCGKTSSA 54
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
24-74 |
4.51e-04 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 42.17 E-value: 4.51e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 515656577 24 RPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAA 74
Cdd:PRK00440 12 RPRTLDEIVGQEEIV---ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALA 59
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
56-137 |
4.91e-04 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 42.59 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 56 MILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDEVhrfnksqqDA 128
Cdd:TIGR01243 215 VLLYGPPGTGKTLLAKAVANEAGAYFISINGpeimskyYGESEERLREIFKEAEENAPS----IIFIDEI--------DA 282
|
....*....
gi 515656577 129 FLPHIEDGT 137
Cdd:TIGR01243 283 IAPKREEVT 291
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
55-142 |
9.32e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.25 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 55 SMILWGPPGTGKTTLAE-VAANYANAEVERVS---AVTSGVKDIRIAIEKA-------RENKQAGRRTI----------- 112
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRrLLEQLPEVRDSVVFvdlPSGTSPKDLLRALLRAlglplsgRLSKEELLAALqqlllalavav 86
|
90 100 110
....*....|....*....|....*....|....*.
gi 515656577 113 -LFVDEVHRFnKSQQDAFLPHIEDG-----TVTFIG 142
Cdd:pfam13401 87 vLIIDEAQHL-SLEALEELRDLLNLsskllQLILVG 121
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
56-118 |
9.89e-04 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 41.43 E-value: 9.89e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 56 MILWGPPGTGKTTLAEVAANYANAEVERVSA-------VTSGVKDIRIAIEKARENKQAgrrtILFVDEV 118
Cdd:TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANFIAVRGpeilskwVGESEKAIREIFRKARQAAPA----IIFFDEI 555
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
17-85 |
1.38e-03 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 41.36 E-value: 1.38e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515656577 17 RPLAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILWGPPGTGK--TTLAEVAANYANAE----VERVS 85
Cdd:PRK04132 7 KPWVEKYRPQRLDDIVGQEHIV---KRLKHYVKTGSMPHLLFAGPPGVGKclTGDTKVIANGELFEigelVEKIS 78
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
19-145 |
1.41e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 19 LAARMRPETVEQYIGQQHILgpgKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYANAEvERVSAVTSGVKDIRIA 97
Cdd:PRK07994 6 LARKWRPQTFAEVVGQEHVL---TALANALDLGRLHHAYLFsGTRGVGKTTIARLLAKGLNCE-TGITATPCGECDNCRE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 98 IEKAR----------------------ENKQ----AGRRTILFVDEVH-----RFNksqqdAFL-------PHiedgtVT 139
Cdd:PRK07994 82 IEQGRfvdlieidaasrtkvedtrellDNVQyapaRGRFKVYLIDEVHmlsrhSFN-----ALLktleeppEH-----VK 151
|
....*.
gi 515656577 140 FIGATT 145
Cdd:PRK07994 152 FLLATT 157
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
29-84 |
1.85e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 40.15 E-value: 1.85e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 29 EQYIGQQHILgpgkplRRALEA----GHIhsmILWGPPGTGKTTLAEVAANYANAEVERV 84
Cdd:COG0714 12 KVYVGQEELI------ELVLIAllagGHL---LLEGVPGVGKTTLAKALARALGLPFIRI 62
|
|
| DExxQc_SF1-N |
cd17914 |
DEXQ-box helicase domain of superfamily 1 helicase; The superfamily (SF)1 family members ... |
60-142 |
2.54e-03 |
|
DEXQ-box helicase domain of superfamily 1 helicase; The superfamily (SF)1 family members include UvrD/Rep, Pif1-like, and Upf-1-like proteins. Like SF2, they do not form toroidal, predominantly hexameric structures like SF3-6. Their helicase core is surrounded by C and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains or domains engaged in protein-protein interactions. SF1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438706 [Multi-domain] Cd Length: 121 Bit Score: 37.85 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 60 GPPGTGKTTLA--EVAANYANAEVERVSavtsgvkdIRIAiekARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIED-G 136
Cdd:cd17914 6 GPPGTGKTRVLvkIVAALMQNKNGEPGR--------ILLV---TPTNKAAAQLDNILVDEAAQILEPETSRLIDLALDqG 74
|
....*.
gi 515656577 137 TVTFIG 142
Cdd:cd17914 75 RVILVG 80
|
|
| DEXXQc_Helz-like |
cd18038 |
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and ... |
56-74 |
2.59e-03 |
|
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and similar proteins. Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. All are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350796 [Multi-domain] Cd Length: 229 Bit Score: 39.14 E-value: 2.59e-03
|
| ftsH |
CHL00176 |
cell division protein; Validated |
57-118 |
2.61e-03 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 40.03 E-value: 2.61e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515656577 57 ILWGPPGTGKTTLAEVAANYANAE---------VER-VSAVTSGVKDIriaIEKARENKQAgrrtILFVDEV 118
Cdd:CHL00176 220 LLVGPPGTGKTLLAKAIAGEAEVPffsisgsefVEMfVGVGAARVRDL---FKKAKENSPC----IVFIDEI 284
|
|
| DEXXQc_SF1 |
cd18043 |
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are ... |
44-84 |
2.92e-03 |
|
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350801 [Multi-domain] Cd Length: 127 Bit Score: 37.56 E-value: 2.92e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 515656577 44 LRRALEAGhihSMILWGPPGTGKT-TLAEVAANYAnAEVERV 84
Cdd:cd18043 8 IISARNGK---NVVIQGPPGTGKSqTIANIIANAL-ARGKRV 45
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
50-75 |
5.34e-03 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 39.06 E-value: 5.34e-03
10 20
....*....|....*....|....*.
gi 515656577 50 AGHIHSMILWGPPGTGKTTLAEVAAN 75
Cdd:TIGR03922 309 AQTSNHMLFAGPPGTGKTTIARVVAK 334
|
|
| RecA-like_BCS1 |
cd19510 |
Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of ... |
41-142 |
6.04e-03 |
|
Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of mitochondrial respiratory chain complex III and plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex. RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410918 [Multi-domain] Cd Length: 153 Bit Score: 37.33 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515656577 41 GKPLRRaleaghihSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRiaieKARENKQAGRRTILFVDEV-- 118
Cdd:cd19510 19 GIPYRR--------GYLLYGPPGTGKSSFIAALAGELDYDICDLNLSEVVLTDDR----LNHLLNTAPKQSIILLEDIda 86
|
90 100
....*....|....*....|....*...
gi 515656577 119 ----HRFNKSQQDAFLPHiedGTVTFIG 142
Cdd:cd19510 87 afesREHNKKNPSAYGGL---SRVTFSG 111
|
|
| |
