NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|515669070|ref|WP_017101670|]
View 

MULTISPECIES: DUF6434 domain-containing protein [Vibrio]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF6434 pfam20026
Domain of unknown function (DUF6434); This domain of unknown function is found in ...
 5-67 6.42e-33

Domain of unknown function (DUF6434); This domain of unknown function is found in uncharacterized proteins mainly from bacteria, but it is also found in eukaryotes. Some proteins containing this domain also contain zinc finger C2H2-type domains. There are three conserved motifs: TxI/V, RxFF and FxF, and a conserved W/Y residue at the C-terminal.


:

Pssm-ID: 466263  Cd Length: 64  Bit Score: 107.31  E-value: 6.42e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515669070   5 DWHKNQIDDSTVITDSYKTTQNVRRYFKSKLGEEFKFDRDFMQWMNNATGLTMGDALQEWAKR 67
Cdd:pfam20026  2 DWHSDPITRDTPITDSYKNTQNVRRFFKSQCGEAFKFDRDFMAWIKSGTGKTMGDAADEWLRR 64
 
Name Accession Description Interval E-value
DUF6434 pfam20026
Domain of unknown function (DUF6434); This domain of unknown function is found in ...
 5-67 6.42e-33

Domain of unknown function (DUF6434); This domain of unknown function is found in uncharacterized proteins mainly from bacteria, but it is also found in eukaryotes. Some proteins containing this domain also contain zinc finger C2H2-type domains. There are three conserved motifs: TxI/V, RxFF and FxF, and a conserved W/Y residue at the C-terminal.


Pssm-ID: 466263  Cd Length: 64  Bit Score: 107.31  E-value: 6.42e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515669070   5 DWHKNQIDDSTVITDSYKTTQNVRRYFKSKLGEEFKFDRDFMQWMNNATGLTMGDALQEWAKR 67
Cdd:pfam20026  2 DWHSDPITRDTPITDSYKNTQNVRRFFKSQCGEAFKFDRDFMAWIKSGTGKTMGDAADEWLRR 64
 
Name Accession Description Interval E-value
DUF6434 pfam20026
Domain of unknown function (DUF6434); This domain of unknown function is found in ...
 5-67 6.42e-33

Domain of unknown function (DUF6434); This domain of unknown function is found in uncharacterized proteins mainly from bacteria, but it is also found in eukaryotes. Some proteins containing this domain also contain zinc finger C2H2-type domains. There are three conserved motifs: TxI/V, RxFF and FxF, and a conserved W/Y residue at the C-terminal.


Pssm-ID: 466263  Cd Length: 64  Bit Score: 107.31  E-value: 6.42e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515669070   5 DWHKNQIDDSTVITDSYKTTQNVRRYFKSKLGEEFKFDRDFMQWMNNATGLTMGDALQEWAKR 67
Cdd:pfam20026  2 DWHSDPITRDTPITDSYKNTQNVRRFFKSQCGEAFKFDRDFMAWIKSGTGKTMGDAADEWLRR 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH