NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|515671630|ref|WP_017104230|]
View 

MULTISPECIES: carotenoid biosynthesis protein [Vibrio]

Protein Classification

carotenoid biosynthesis protein( domain architecture ID 10006363)

carotenoid biosynthesis protein similar to Haloarcula japonica bisanhydrobacterioruberin hydratase (CruF) that is involved in the biosynthesis of the acyclic C50 carotenoid bacterioruberin (BR) by catalyzing the reaction that introduces hydroxyl groups to C3'' and C3''' of bisanhydrobacterioruberin (BABR) to generate BR

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG2324 COG2324
Uncharacterized membrane protein [Function unknown];
32-195 2.90e-35

Uncharacterized membrane protein [Function unknown];


:

Pssm-ID: 441898  Cd Length: 257  Bit Score: 127.44  E-value: 2.90e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630  32 SVFTPLILFPFAILHGSVYCGIKKMSCFFLLVFVVSVFYESVSISSGFPFGHYYYSDRLGIKIFDVPLAIMPTYFSLGYV 111
Cdd:COG2324   41 NVVYLLLGTLAMLLYAVRGLGDRRALAFLLLAFLLGLAIELLGVSTGFPFGEYSYGSGLGPKLLGVPLTIPLSWFPLVLN 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630 112 SWFISTILLNqfdkpiQTKSKAIIISLTASFVMVSWDVVMDPVNSLIKsLWVWTDRGVYFGVPLSNFFGWFLCVFTFYLP 191
Cdd:COG2324  121 SYLLARLLLG------RRARRPWLRLLLGALLMVAWDLVLDPAAVALG-FWVWEGGGPYFGVPLSNYLGWFLVGLVFVLL 193


                 ....
gi 515671630 192 FSLW 195
Cdd:COG2324  194 LDLL 197
 
Name Accession Description Interval E-value
COG2324 COG2324
Uncharacterized membrane protein [Function unknown];
32-195 2.90e-35

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 441898  Cd Length: 257  Bit Score: 127.44  E-value: 2.90e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630  32 SVFTPLILFPFAILHGSVYCGIKKMSCFFLLVFVVSVFYESVSISSGFPFGHYYYSDRLGIKIFDVPLAIMPTYFSLGYV 111
Cdd:COG2324   41 NVVYLLLGTLAMLLYAVRGLGDRRALAFLLLAFLLGLAIELLGVSTGFPFGEYSYGSGLGPKLLGVPLTIPLSWFPLVLN 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630 112 SWFISTILLNqfdkpiQTKSKAIIISLTASFVMVSWDVVMDPVNSLIKsLWVWTDRGVYFGVPLSNFFGWFLCVFTFYLP 191
Cdd:COG2324  121 SYLLARLLLG------RRARRPWLRLLLGALLMVAWDLVLDPAAVALG-FWVWEGGGPYFGVPLSNYLGWFLVGLVFVLL 193


                 ....
gi 515671630 192 FSLW 195
Cdd:COG2324  194 LDLL 197
Caroten_synth pfam04240
Carotenoid biosynthesis protein; The representative member of this family is CruF, a C50 ...
 37-183 5.45e-25

Carotenoid biosynthesis protein; The representative member of this family is CruF, a C50 carotenoid 2',3'-hydratase involved in the synthesis of the C50 carotenoid bacterioruberin in the halophilic archaeon Haloarcula japonica.


Pssm-ID: 427811  Cd Length: 209  Bit Score: 98.81  E-value: 5.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630   37 LILFPFAI--LHGSVYCGIKKMSCFFLLVFVVSVFYESVSISSGFPFGHYYYSDRLGIKIFD-VPLAIMPTYFSLGYVSW 113
Cdd:pfam04240   5 LILLGTAAmaLPAYRTLGLRRALGFLAPAVGYSLGSELLGVSTGFPFGEYSYLSGLGPKIAGlVPFTIPLSWFPLVLNAY 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630  114 FISTILLNQFDKPiqtksKAIIISLTASFVmVSWDVVMDPVNSLIkSLWVWTDRGVYFGVPLSNFFGWFL 183
Cdd:pfam04240  85 LLARLGLGSRARR-----SWLRILLAALLL-TAWDLVLDPAMVAL-GFWVWDEPGAFYGVPLQNFAGWLL 147
crt_membr_arch TIGR03460
carotene biosynthesis associated membrane protein;
71-192 1.63e-13

carotene biosynthesis associated membrane protein;


Pssm-ID: 132500  Cd Length: 232  Bit Score: 68.32  E-value: 1.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630   71 ESVSISSGFPFGHYYYSDRLGIKIF-DVPLAIMPTYFSLGYVSWFISTILLNQFDKPIqtkskaiiisLTASFVMVSWDV 149
Cdd:TIGR03460  69 ETVGVHTGWPFGEYVYGSALGPKILgHVPFVVPMAWFPLTLPSYVLARRHHRGRVRSL----------LLAALVLALWDV 138

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 515671630  150 VMDPVNSLIKsLWVWTDRGVYFGVPLSNFFGWFLCVFTFYLPF 192
Cdd:TIGR03460 139 VIDPAMVAAG-FWRWLGPGPFYGVPLQNTAGWVLSGIAAVLLL 180
 
Name Accession Description Interval E-value
COG2324 COG2324
Uncharacterized membrane protein [Function unknown];
32-195 2.90e-35

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 441898  Cd Length: 257  Bit Score: 127.44  E-value: 2.90e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630  32 SVFTPLILFPFAILHGSVYCGIKKMSCFFLLVFVVSVFYESVSISSGFPFGHYYYSDRLGIKIFDVPLAIMPTYFSLGYV 111
Cdd:COG2324   41 NVVYLLLGTLAMLLYAVRGLGDRRALAFLLLAFLLGLAIELLGVSTGFPFGEYSYGSGLGPKLLGVPLTIPLSWFPLVLN 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630 112 SWFISTILLNqfdkpiQTKSKAIIISLTASFVMVSWDVVMDPVNSLIKsLWVWTDRGVYFGVPLSNFFGWFLCVFTFYLP 191
Cdd:COG2324  121 SYLLARLLLG------RRARRPWLRLLLGALLMVAWDLVLDPAAVALG-FWVWEGGGPYFGVPLSNYLGWFLVGLVFVLL 193


                 ....
gi 515671630 192 FSLW 195
Cdd:COG2324  194 LDLL 197
Caroten_synth pfam04240
Carotenoid biosynthesis protein; The representative member of this family is CruF, a C50 ...
 37-183 5.45e-25

Carotenoid biosynthesis protein; The representative member of this family is CruF, a C50 carotenoid 2',3'-hydratase involved in the synthesis of the C50 carotenoid bacterioruberin in the halophilic archaeon Haloarcula japonica.


Pssm-ID: 427811  Cd Length: 209  Bit Score: 98.81  E-value: 5.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630   37 LILFPFAI--LHGSVYCGIKKMSCFFLLVFVVSVFYESVSISSGFPFGHYYYSDRLGIKIFD-VPLAIMPTYFSLGYVSW 113
Cdd:pfam04240   5 LILLGTAAmaLPAYRTLGLRRALGFLAPAVGYSLGSELLGVSTGFPFGEYSYLSGLGPKIAGlVPFTIPLSWFPLVLNAY 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630  114 FISTILLNQFDKPiqtksKAIIISLTASFVmVSWDVVMDPVNSLIkSLWVWTDRGVYFGVPLSNFFGWFL 183
Cdd:pfam04240  85 LLARLGLGSRARR-----SWLRILLAALLL-TAWDLVLDPAMVAL-GFWVWDEPGAFYGVPLQNFAGWLL 147
crt_membr_arch TIGR03460
carotene biosynthesis associated membrane protein;
71-192 1.63e-13

carotene biosynthesis associated membrane protein;


Pssm-ID: 132500  Cd Length: 232  Bit Score: 68.32  E-value: 1.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515671630   71 ESVSISSGFPFGHYYYSDRLGIKIF-DVPLAIMPTYFSLGYVSWFISTILLNQFDKPIqtkskaiiisLTASFVMVSWDV 149
Cdd:TIGR03460  69 ETVGVHTGWPFGEYVYGSALGPKILgHVPFVVPMAWFPLTLPSYVLARRHHRGRVRSL----------LLAALVLALWDV 138

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 515671630  150 VMDPVNSLIKsLWVWTDRGVYFGVPLSNFFGWFLCVFTFYLPF 192
Cdd:TIGR03460 139 VIDPAMVAAG-FWRWLGPGPFYGVPLQNTAGWVLSGIAAVLLL 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH