|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
21-471 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 683.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 21 EFSMWVRPLQA-ELNGNTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDIpHLHFEIGSKRVTAPKSETVAPARTRTA 99
Cdd:TIGR00362 16 EYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEI-EIEFTVGEDEEELEPNSKKPEPAPPEA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 100 AdvaaessapaqlqarkpvhniwrdeepvaVDLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGG 179
Cdd:TIGR00362 95 P-----------------------------APPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 180 TGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 259
Cdd:TIGR00362 146 VGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHT 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 260 FNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNV 339
Cdd:TIGR00362 226 FNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNV 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 340 RELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMAL 419
Cdd:TIGR00362 306 RELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYL 385
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 515674917 420 AKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTL 471
Cdd:TIGR00362 386 AKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-473 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 674.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 1 MSSSLWLQCLQQLQEELPATEFSMWVRPLQ-AELNGNTLTLFAPNRFVLDWVRDKYLNSINRLLQeycgndiphlhfeig 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 80 skrvtapksetvapartrtaadvaaessapaqlqarkpvhniwrdeepvavdlnhrsnVNPKHKFNNFVEGKSNQLGLAA 159
Cdd:PRK00149 66 ----------------------------------------------------------LNPKYTFDNFVVGKSNRLAHAA 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 160 ARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 239
Cdd:PRK00149 88 ALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLL 167
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 240 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDH 319
Cdd:PRK00149 168 IDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE 247
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 320 QIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVAD 399
Cdd:PRK00149 248 GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSD 327
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515674917 400 LLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTLSS 473
Cdd:PRK00149 328 LKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
139-440 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 545.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 139 NPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVK 218
Cdd:COG0593 2 NPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFIN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 219 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 298
Cdd:COG0593 82 AIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 299 AIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEK 378
Cdd:COG0593 162 DIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKK 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515674917 379 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDH 440
Cdd:COG0593 242 EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
139-356 |
1.75e-124 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 361.26 E-value: 1.75e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 139 NPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVK 218
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 219 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 298
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 515674917 299 AIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFT 356
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
382-471 |
5.76e-42 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 144.19 E-value: 5.76e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 382 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIK 461
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 515674917 462 EDYSNLIRTL 471
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
381-449 |
2.23e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 131.09 E-value: 2.23e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515674917 381 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 449
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
21-471 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 683.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 21 EFSMWVRPLQA-ELNGNTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDIpHLHFEIGSKRVTAPKSETVAPARTRTA 99
Cdd:TIGR00362 16 EYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEI-EIEFTVGEDEEELEPNSKKPEPAPPEA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 100 AdvaaessapaqlqarkpvhniwrdeepvaVDLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGG 179
Cdd:TIGR00362 95 P-----------------------------APPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 180 TGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 259
Cdd:TIGR00362 146 VGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHT 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 260 FNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNV 339
Cdd:TIGR00362 226 FNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNV 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 340 RELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMAL 419
Cdd:TIGR00362 306 RELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYL 385
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 515674917 420 AKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTL 471
Cdd:TIGR00362 386 AKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-473 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 674.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 1 MSSSLWLQCLQQLQEELPATEFSMWVRPLQ-AELNGNTLTLFAPNRFVLDWVRDKYLNSINRLLQeycgndiphlhfeig 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 80 skrvtapksetvapartrtaadvaaessapaqlqarkpvhniwrdeepvavdlnhrsnVNPKHKFNNFVEGKSNQLGLAA 159
Cdd:PRK00149 66 ----------------------------------------------------------LNPKYTFDNFVVGKSNRLAHAA 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 160 ARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 239
Cdd:PRK00149 88 ALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLL 167
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 240 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDH 319
Cdd:PRK00149 168 IDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE 247
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 320 QIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVAD 399
Cdd:PRK00149 248 GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSD 327
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515674917 400 LLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTLSS 473
Cdd:PRK00149 328 LKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
139-440 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 545.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 139 NPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVK 218
Cdd:COG0593 2 NPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFIN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 219 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 298
Cdd:COG0593 82 AIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 299 AIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEK 378
Cdd:COG0593 162 DIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKK 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515674917 379 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDH 440
Cdd:COG0593 242 EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
139-356 |
1.75e-124 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 361.26 E-value: 1.75e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 139 NPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVK 218
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 219 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 298
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 515674917 299 AIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFT 356
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
86-460 |
3.54e-116 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 354.13 E-value: 3.54e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 86 PKSETVAPARTRTAADVAAESSAPAQLQARKPVHNIWRDEEPVAVDLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSD 165
Cdd:PRK14086 229 PEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEPTARLNPKYTFDTFVIGASNRFAHAAAVAVAE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 166 NPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQF 245
Cdd:PRK14086 309 APAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQF 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 246 FANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLAD 325
Cdd:PRK14086 389 LEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPP 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 326 EVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKVADLLSKR 404
Cdd:PRK14086 469 EVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPeITAAAIMAATADYFGLTVEDLCGTS 548
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 515674917 405 RSRSVARPRQLAMALAKELTNHSLPEIGDAFgGRDHTTVLHACRKIAQLREESHDI 460
Cdd:PRK14086 549 RSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAERRSI 603
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
125-473 |
1.73e-74 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 240.89 E-value: 1.73e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 125 EEPVAVDLNHRSNVNPKHKFNNFVEGKSN----QLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIvdNKP 200
Cdd:PRK12422 91 QEKTAYFTMKYGELDPLMTFANFLVTPENdlphRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHAL--RES 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 201 NAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL-LEGnQQIILTSDRYPK 279
Cdd:PRK12422 169 GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLhTEG-KLIVISSTCAPQ 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 280 EINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRV---IANANFT 356
Cdd:PRK12422 248 DLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLakrVAYKKLS 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 357 GRPITIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAF 435
Cdd:PRK12422 328 HQLLYVDDIKALLHDVLEAAESVrLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF 407
|
330 340 350
....*....|....*....|....*....|....*....
gi 515674917 436 gGRDHTTVLHACRKIAQ-LREESHDIKEDYSNLIRTLSS 473
Cdd:PRK12422 408 -SRDHSTVISSIRAISQkLEEDDRDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
382-471 |
5.76e-42 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 144.19 E-value: 5.76e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 382 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIK 461
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 515674917 462 EDYSNLIRTL 471
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
382-450 |
1.42e-39 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 137.15 E-value: 1.42e-39
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515674917 382 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 450
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
381-449 |
2.23e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 131.09 E-value: 2.23e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515674917 381 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 449
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
144-370 |
3.56e-32 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 122.30 E-value: 3.56e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 144 FNNFVEGkSNQLGLAAARQVSDNPGTayNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAkvVYMHSERFVQDMVKALqnN 223
Cdd:TIGR03420 14 FDNFYAG-GNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAAAEERGKSA--IYLPLAELAQADPEVL--E 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 224 AIEEFkryyrsvDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 303
Cdd:TIGR03420 87 GLEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515674917 304 ELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 370
Cdd:TIGR03420 160 SDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
153-296 |
1.33e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 82.58 E-value: 1.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 153 NQLGLAAARQVSDNPgtAYNPLFLYGGTGLGKTHLLHAVGNAIVdnKPNAKVVYMHSERFVQDMVKALQ----NNAIEEF 228
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELfghfLVRLLFE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515674917 229 KRYYRSVDALLIDDIQFFANKERSQ-EEFFHTFNALLE--GNQQIILTSDR--YPKEINGVEDRLKSRFGWGL 296
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNAlLRVLETLNDLRIdrENVRVIGATNRplLGDLDRALYDRLDIRIVIPL 151
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
144-370 |
7.26e-18 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 82.42 E-value: 7.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 144 FNNFVEGKSNQLgLAAARQVSDNPGTAYnpLFLYGGTGLGKTHLLHAVGNAIvdNKPNAKVVYMHSER---FVQDMVKAL 220
Cdd:PRK08084 21 FASFYPGDNDSL-LAALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKrawFVPEVLEGM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 221 QnnaieefkryyrSVDALLIDDIQFFANKERSQEEFFHTFNALLE-GNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 299
Cdd:PRK08084 96 E------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILEsGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515674917 300 IEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 370
Cdd:PRK08084 164 LQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
144-369 |
3.67e-15 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 74.63 E-value: 3.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 144 FNNFVEGKSNQLgLAAARQVSdnPGTAYNPLF-LYGGTGLGKTHLLHAVGNAIVDNKPNAkvVYmhserfvqdmvkaLQN 222
Cdd:PRK08903 17 FDNFVAGENAEL-VARLRELA--AGPVADRFFyLWGEAGSGRSHLLQALVADASYGGRNA--RY-------------LDA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 223 NAIEEFKRYYRSVDALLIDDIQFFANKErsQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 302
Cdd:PRK08903 79 ASPLLAFDFDPEAELYAVDDVERLDDAQ--QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515674917 303 PELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREAL 369
Cdd:PRK08903 157 LSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREML 223
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
3-65 |
7.11e-11 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 57.68 E-value: 7.11e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515674917 3 SSLWLQCLQQLQEELPATEFSMWVRPLQAE--LNGNTLTLFAPNRFVLDWVRDKYLNSINRLLQE 65
Cdd:pfam11638 1 EELWERVLERLRKEVGEQTFNTWIKPLTLVdlDDGGSLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
389-456 |
8.72e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 59.41 E-value: 8.72e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515674917 389 VAEYYKIKVADLLS-KRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGgRDHTTVLHACRKIAQLREE 456
Cdd:PRK06030 32 LALAFGVSGAEIASpLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLRDD 99
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
174-274 |
1.00e-10 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 61.72 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 174 LFLYGGTGLGKTHLLHAVGNAIVDNkpNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQ 253
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHEACRA--GYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGA 179
|
90 100
....*....|....*....|.
gi 515674917 254 EEFFHTFNALLEgNQQIILTS 274
Cdd:COG1484 180 ELLFELISDRYE-RRSTIITS 199
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
172-292 |
3.21e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.76 E-value: 3.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 172 NPLFLYGGTGLGKTHLLHAVGNAIvdNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRY---------------YRSVD 236
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515674917 237 ALLIDDIQFFANKERSQEEFFHTFNALL-----EGNQQIILTSDRYPKEIngvEDRLKSRF 292
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLlllksEKNLTVILTTNDEKDLG---PALLRRRF 138
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
174-292 |
4.05e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 54.91 E-value: 4.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 174 LFLYGGTGLGKTHLLHAVGNAIVDNKpnAKVVYMHSERFVQDMVKA-LQNNAIEEFKR-YYRSVDALLIDDIQFFANKER 251
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADELIEILREIrFNNDKELEEVYdLLINCDLLIIDDLGTEKITEF 263
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 515674917 252 SQEEFFHTFNA-LLEGNQQIILT-------SDRYPKEINGvedRLKSRF 292
Cdd:PRK06835 264 SKSELFNLINKrLLRQKKMIISTnlsleelLKTYSERISS---RLLGNF 309
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
174-243 |
1.25e-06 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 50.25 E-value: 1.25e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 174 LFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSerFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 243
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
2-105 |
3.89e-05 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 45.52 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQAELNGNTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDIpHLHFEIgsk 81
Cdd:PRK06672 191 SKTIWNKIKDKMQLKISRPSYETWVKETTARINEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTGNTY-EIQFEL--- 266
|
90 100
....*....|....*....|....
gi 515674917 82 rvtapKSETVAPARTRTAADVAAE 105
Cdd:PRK06672 267 -----KSNTTSNNEKSTIKDITSE 285
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
81-243 |
5.21e-05 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 44.83 E-value: 5.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 81 KRVTAPKSetVAPARTrtaadvAAESSAPAQLQARKPVHNIWRDEEPVAVD--LNhRSNVNPKHK---FNNF-VEGKSNQ 154
Cdd:PRK12377 14 RRLAPQGV--QPPFRT------VDEWREWQLAEGRKRSEEINRQNQQLRVEkiLN-RSGIQPLHRkcsFANYqVQNDGQR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 155 LGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYmhserfVQDMVKALQN-----NAIEEFK 229
Cdd:PRK12377 85 YALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT------VPDVMSRLHEsydngQSGEKFL 158
|
170
....*....|....
gi 515674917 230 RYYRSVDALLIDDI 243
Cdd:PRK12377 159 QELCKVDLLVLDEI 172
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
143-291 |
4.17e-04 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 41.93 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 143 KFNNF-VEGKSNQLGLAAARQV-------SDNPGtaynpLFLYGGTGLGKTHLLHAVGNAIVDNKpnAKVVYMHSERFVQ 214
Cdd:PRK08116 83 TFENFlFDKGSEKAYKIARKYVkkfeemkKENVG-----LLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQLLN 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 215 DMVKALQNNAIEEFKRYYRSV---DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEI-NGVEDRLKS 290
Cdd:PRK08116 156 RIKSTYKSSGKEDENEIIRSLvnaDLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELkNQYGKRIYD 235
|
.
gi 515674917 291 R 291
Cdd:PRK08116 236 R 236
|
|
| PRK09087 |
PRK09087 |
hypothetical protein; Validated |
176-350 |
5.91e-04 |
|
hypothetical protein; Validated
Pssm-ID: 169652 [Multi-domain] Cd Length: 226 Bit Score: 41.20 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 176 LYGGTGLGKTHLlhavgNAIVDNKPNAkvVYMHSERFVQDMVKALQNNAIeefkryyrsvdalLIDDIQffaNKERSQEE 255
Cdd:PRK09087 49 LAGPVGSGKTHL-----ASIWREKSDA--LLIHPNEIGSDAANAAAEGPV-------------LIEDID---AGGFDETG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 256 FFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRL 335
Cdd:PRK09087 106 LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRM 185
|
170
....*....|....*
gi 515674917 336 RsnvRELEgALNRVI 350
Cdd:PRK09087 186 E---RSLF-AAQTIV 196
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
144-300 |
1.06e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 40.92 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 144 FNNFV-EGKSNQLGLA---AARQVSDNP---GTAYNPLFLYGGTGLGKTHLLHAVGNAIVdNKPNAKVVYMhseRFVQDM 216
Cdd:PRK06921 83 FKNFKtEGKPQAIKDAyecAVEYVKDFEkiqESRKNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYF---PFVEGF 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 217 VKaLQNN--AIEEFKRYYRSVDALLIDDIQFFANKERSQEEF-----FHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 289
Cdd:PRK06921 159 GD-LKDDfdLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWqieqmYSVLNYRYLNHKPILISSELTIDELLDIDEALG 237
|
170
....*....|....
gi 515674917 290 SRF---GWGLTVAI 300
Cdd:PRK06921 238 SRIvemCKDYLVII 251
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
225-369 |
1.52e-03 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 39.83 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 225 IEEFkryYRSVDALLIDDIQFFANKErsqeeFFHTFNALLEGNQQIILTSDRYPKeiNGVEDRLKSRFGWGLTVAIEPPE 304
Cdd:PRK06620 79 NEEI---LEKYNAFIIEDIENWQEPA-----LLHIFNIINEKQKYLLLTSSDKSR--NFTLPDLSSRIKSVLSILLNSPD 148
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515674917 305 LETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREAL 369
Cdd:PRK06620 149 DELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
135-243 |
6.77e-03 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 38.21 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515674917 135 RSNVNPKHK---FNNF-VEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYmhse 210
Cdd:PRK07952 59 RSGIRPLHQncsFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT---- 134
|
90 100 110
....*....|....*....|....*....|....*....
gi 515674917 211 rfVQDMVKALQ------NNAIEEFKRYYRSVDALLIDDI 243
Cdd:PRK07952 135 --VADIMSAMKdtfsnsETSEEQLLNDLSNVDLLVIDEI 171
|
|
| |
