NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|515743322|ref|WP_017175922|]
View 

MULTISPECIES: CsbA family protein [Staphylococcus]

Protein Classification

CsbA family protein( domain architecture ID 10008919)

CsbA family protein is a DUF2198 domain-containing protein; similar to Bacillus subtilis protein CsbA

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CsbA COG4897
General stress protein CsbA (function unknown) [Function unknown];
2-75 7.24e-27

General stress protein CsbA (function unknown) [Function unknown];


:

Pssm-ID: 443925  Cd Length: 77  Bit Score: 92.72  E-value: 7.24e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515743322  2 IWYTLAAFFPCILVILFSVITRSKWVGVIVTLILIAASVYKGFFHNEWIIFLDVVSILAGYVIIDNLEFHKHQD 75
Cdd:COG4897   3 TWYVLALFLPALLVILFTRVTYNHYVGLLLTVALIGASVYKGYTHSEWIIILDAASLTAGFLYATRMNKDKKED 76
 
Name Accession Description Interval E-value
CsbA COG4897
General stress protein CsbA (function unknown) [Function unknown];
2-75 7.24e-27

General stress protein CsbA (function unknown) [Function unknown];


Pssm-ID: 443925  Cd Length: 77  Bit Score: 92.72  E-value: 7.24e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515743322  2 IWYTLAAFFPCILVILFSVITRSKWVGVIVTLILIAASVYKGFFHNEWIIFLDVVSILAGYVIIDNLEFHKHQD 75
Cdd:COG4897   3 TWYVLALFLPALLVILFTRVTYNHYVGLLLTVALIGASVYKGYTHSEWIIILDAASLTAGFLYATRMNKDKKED 76
DUF2198 pfam09964
Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various ...
 3-74 6.02e-22

Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 401803  Cd Length: 72  Bit Score: 80.02  E-value: 6.02e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515743322   3 WYTLAAFFPCILVILFSVITRSKWVGVIVTLILIAASVYKGFFHNEWIIFLDVVSILAGYVIIDNLEFHKHQ 74
Cdd:pfam09964  1 WFVSALIFPCLLVVLFTRVTYNHYIGLLLTVALIVASYYKGYTDTWWIIIIDAASLTAGFLYAKRMLKKKKK 72
 
Name Accession Description Interval E-value
CsbA COG4897
General stress protein CsbA (function unknown) [Function unknown];
2-75 7.24e-27

General stress protein CsbA (function unknown) [Function unknown];


Pssm-ID: 443925  Cd Length: 77  Bit Score: 92.72  E-value: 7.24e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515743322  2 IWYTLAAFFPCILVILFSVITRSKWVGVIVTLILIAASVYKGFFHNEWIIFLDVVSILAGYVIIDNLEFHKHQD 75
Cdd:COG4897   3 TWYVLALFLPALLVILFTRVTYNHYVGLLLTVALIGASVYKGYTHSEWIIILDAASLTAGFLYATRMNKDKKED 76
DUF2198 pfam09964
Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various ...
 3-74 6.02e-22

Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 401803  Cd Length: 72  Bit Score: 80.02  E-value: 6.02e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515743322   3 WYTLAAFFPCILVILFSVITRSKWVGVIVTLILIAASVYKGFFHNEWIIFLDVVSILAGYVIIDNLEFHKHQ 74
Cdd:pfam09964  1 WFVSALIFPCLLVVLFTRVTYNHYIGLLLTVALIVASYYKGYTDTWWIIIIDAASLTAGFLYAKRMLKKKKK 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH