NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|515743383|ref|WP_017175983|]
View 

MULTISPECIES: SA0632 family lipoprotein [Staphylococcus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK03992 super family cl32052
proteasome-activating nucleotidase; Provisional
 22-62 2.67e-04

proteasome-activating nucleotidase; Provisional


The actual alignment was detected with superfamily member PRK03992:

Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 39.05  E-value: 2.67e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 515743383  22 EEKVSLENDIKQLEKENKDLKNEKNNLEKQKEKLNAQREKL 62
Cdd:PRK03992   8 ERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48
 
Name Accession Description Interval E-value
PRK03992 PRK03992
proteasome-activating nucleotidase; Provisional
 22-62 2.67e-04

proteasome-activating nucleotidase; Provisional


Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 39.05  E-value: 2.67e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 515743383  22 EEKVSLENDIKQLEKENKDLKNEKNNLEKQKEKLNAQREKL 62
Cdd:PRK03992   8 ERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48
 
Name Accession Description Interval E-value
PRK03992 PRK03992
proteasome-activating nucleotidase; Provisional
 22-62 2.67e-04

proteasome-activating nucleotidase; Provisional


Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 39.05  E-value: 2.67e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 515743383  22 EEKVSLENDIKQLEKENKDLKNEKNNLEKQKEKLNAQREKL 62
Cdd:PRK03992   8 ERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 26-84 1.81e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 36.73  E-value: 1.81e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515743383  26 SLENDIKQLEKENKDLKNEKNNLEKQKEKLNAQREKLQKEVDSSV--AKESVKQETEKSKK 84
Cdd:PRK00409 524 SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLeeAEKEAQQAIKEAKK 584
valS PRK05729
valyl-tRNA synthetase; Reviewed
 20-64 4.90e-03

valyl-tRNA synthetase; Reviewed


Pssm-ID: 235582 [Multi-domain]  Cd Length: 874  Bit Score: 35.47  E-value: 4.90e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 515743383  20 KSEEKVSLENDIKQLEKE----NKDLKNEK--NN-----LEKQKEKLNAQREKLQK 64
Cdd:PRK05729 809 VEAELARLEKELAKLEKEiervEKKLSNEGfvAKapeevVEKEREKLAEYEEKLAK 864
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH