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Conserved domains on  [gi|515905404|ref|WP_017335987|]
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MULTISPECIES: ribbon-helix-helix domain-containing protein [Gammaproteobacteria]

Protein Classification

ribbon-helix-helix domain-containing protein( domain architecture ID 11245493)

ribbon-helix-helix (RHH) domain-containing protein may bind DNA and may be a part of a toxin-antitoxin system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHH_6 pfam16762
Ribbon-helix-helix domain; This ribbon-helix-helix domain binds to DNA and may be a part of a ...
 2-78 1.25e-38

Ribbon-helix-helix domain; This ribbon-helix-helix domain binds to DNA and may be a part of a toxin-antitoxin system.


:

Pssm-ID: 407030  Cd Length: 77  Bit Score: 122.62  E-value: 1.25e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515905404   2 NTTRWNVAVSTDTDQSLRMFLASQGGGRKGDLSRFIEEAVRAHILELSAEQAKVSNAHLSEAELTEAVEEALDWARK 78
Cdd:pfam16762  1 DTTRWNVAVSPETDQALRMFLASQGGGRKGDLSRFIEEAVRARLLELAVEEAKAANADVSEDELQALVDEALAWARK 77
 
Name Accession Description Interval E-value
RHH_6 pfam16762
Ribbon-helix-helix domain; This ribbon-helix-helix domain binds to DNA and may be a part of a ...
 2-78 1.25e-38

Ribbon-helix-helix domain; This ribbon-helix-helix domain binds to DNA and may be a part of a toxin-antitoxin system.


Pssm-ID: 407030  Cd Length: 77  Bit Score: 122.62  E-value: 1.25e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515905404   2 NTTRWNVAVSTDTDQSLRMFLASQGGGRKGDLSRFIEEAVRAHILELSAEQAKVSNAHLSEAELTEAVEEALDWARK 78
Cdd:pfam16762  1 DTTRWNVAVSPETDQALRMFLASQGGGRKGDLSRFIEEAVRARLLELAVEEAKAANADVSEDELQALVDEALAWARK 77
 
Name Accession Description Interval E-value
RHH_6 pfam16762
Ribbon-helix-helix domain; This ribbon-helix-helix domain binds to DNA and may be a part of a ...
 2-78 1.25e-38

Ribbon-helix-helix domain; This ribbon-helix-helix domain binds to DNA and may be a part of a toxin-antitoxin system.


Pssm-ID: 407030  Cd Length: 77  Bit Score: 122.62  E-value: 1.25e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515905404   2 NTTRWNVAVSTDTDQSLRMFLASQGGGRKGDLSRFIEEAVRAHILELSAEQAKVSNAHLSEAELTEAVEEALDWARK 78
Cdd:pfam16762  1 DTTRWNVAVSPETDQALRMFLASQGGGRKGDLSRFIEEAVRARLLELAVEEAKAANADVSEDELQALVDEALAWARK 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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