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Conserved domains on  [gi|515927853|ref|WP_017358436|]
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MULTISPECIES: VOC family protein [Bacillus]

Protein Classification

VOC family protein( domain architecture ID 10163535)

vicinal oxygen chelate (VOC) family protein uses a metal center to coordinate a substrate, intermediate, or transition state through vicinal oxygen atoms

CATH:  3.10.180.10
PubMed:  21820381

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GLOD5 cd07253
Human glyoxalase domain-containing protein 5 and similar proteins; Uncharacterized subfamily ...
2-124 8.65e-68

Human glyoxalase domain-containing protein 5 and similar proteins; Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


:

Pssm-ID: 319916 [Multi-domain]  Cd Length: 123  Bit Score: 200.15  E-value: 8.65e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   2 IRRLDHIVLTVQHMEETIRFYTNVLGMKEETFGEGRKALRFGLQKINLHEAGHEFEPKAAHPKPGSADLCFITDLDIDSL 81
Cdd:cd07253    1 IKRLDHLVLTVKDIERTIDFYTKVLGMTVVTFKEGRKALRFGNQKINLHQKGKEFEPKASAPTPGSADLCFITETPIDEV 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 515927853  82 LLHLRKQVVPIEEGPVRRSGALGPIESIYIRDPDMNLIEISRY 124
Cdd:cd07253   81 LEHLEACGVTIEEGPVKRTGALGPILSIYFRDPDGNLIELSNY 123
 
Name Accession Description Interval E-value
GLOD5 cd07253
Human glyoxalase domain-containing protein 5 and similar proteins; Uncharacterized subfamily ...
2-124 8.65e-68

Human glyoxalase domain-containing protein 5 and similar proteins; Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319916 [Multi-domain]  Cd Length: 123  Bit Score: 200.15  E-value: 8.65e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   2 IRRLDHIVLTVQHMEETIRFYTNVLGMKEETFGEGRKALRFGLQKINLHEAGHEFEPKAAHPKPGSADLCFITDLDIDSL 81
Cdd:cd07253    1 IKRLDHLVLTVKDIERTIDFYTKVLGMTVVTFKEGRKALRFGNQKINLHQKGKEFEPKASAPTPGSADLCFITETPIDEV 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 515927853  82 LLHLRKQVVPIEEGPVRRSGALGPIESIYIRDPDMNLIEISRY 124
Cdd:cd07253   81 LEHLEACGVTIEEGPVKRTGALGPILSIYFRDPDGNLIELSNY 123
GloA COG0346
Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family [Secondary ...
3-122 8.38e-20

Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440115 [Multi-domain]  Cd Length: 125  Bit Score: 78.50  E-value: 8.38e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   3 RRLDHIVLTVQHMEETIRFYTNVLGMK---EETFGEGRKALRF----GLQKINLHEAGHEfepKAAHPKPGSADLCFITD 75
Cdd:COG0346    1 MGLHHVTLRVSDLEASLAFYTDVLGLElvkRTDFGDGGFGHAFlrlgDGTELELFEAPGA---APAPGGGGLHHLAFRVD 77
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 515927853  76 lDIDSLLLHLRKQVVPIEEGPVRRsgALGPIeSIYIRDPDMNLIEIS 122
Cdd:COG0346   78 -DLDAAYARLRAAGVEIEGEPRDR--AYGYR-SAYFRDPDGNLIELV 120
Glyoxalase pfam00903
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;
4-121 7.43e-16

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;


Pssm-ID: 395724 [Multi-domain]  Cd Length: 121  Bit Score: 68.24  E-value: 7.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853    4 RLDHIVLTVQHMEETIRFYTNVLGMK--EETFGEGRKALRFGLQKIN--LHEAGHEFEPKAAHPKPGSADLCFITDL--D 77
Cdd:pfam00903   1 RIDHVALRVGDLEKSLDFYTDVLGFKlvEETDAGEEGGLRSAFFLAGgrVLELLLNETPPPAAAGFGGHHIAFIAFSvdD 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 515927853   78 IDSLLLHLRKQVVPIEEGPVRRSGALGpieSIYIRDPDMNLIEI 121
Cdd:pfam00903  81 VDAAYDRLKAAGVEIVREPGRHGWGGR---YSYFRDPDGNLIEL 121
PRK04101 PRK04101
metallothiol transferase FosB;
1-120 5.06e-05

metallothiol transferase FosB;


Pssm-ID: 179740  Cd Length: 139  Bit Score: 40.31  E-value: 5.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   1 MIRRLDHIVLTVQHMEETIRFYTNVLGmkEETFGEGRKALRFGLQK--INLHEAGH----EFEPKAAHpkpgsadLCF-I 73
Cdd:PRK04101   1 MLKGINHICFSVSNLEKSIEFYEKVLG--AKLLVKGRKTAYFDLNGlwIALNEEKDiprnEIHQSYTH-------IAFsI 71
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 515927853  74 TDLDIDSLLLHLRKQVVPIEEGpvrRSGALGPIESIYIRDPDMNLIE 120
Cdd:PRK04101  72 EEEDFDHWYQRLKENDVNILPG---RERDERDKKSIYFTDPDGHKFE 115
glyox_I TIGR00068
lactoylglutathione lyase; Lactoylglutathione lyase is also known as aldoketomutase and ...
3-42 2.08e-04

lactoylglutathione lyase; Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other]


Pssm-ID: 272886  Cd Length: 150  Bit Score: 38.63  E-value: 2.08e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 515927853    3 RRLDHIVLTVQHMEETIRFYTNVLGMK---EETFGEGRKALRF 42
Cdd:TIGR00068  16 RRLLHTMLRVGDLDKSLDFYTEVLGMKllrKRDFPEMKFSLAF 58
 
Name Accession Description Interval E-value
GLOD5 cd07253
Human glyoxalase domain-containing protein 5 and similar proteins; Uncharacterized subfamily ...
2-124 8.65e-68

Human glyoxalase domain-containing protein 5 and similar proteins; Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319916 [Multi-domain]  Cd Length: 123  Bit Score: 200.15  E-value: 8.65e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   2 IRRLDHIVLTVQHMEETIRFYTNVLGMKEETFGEGRKALRFGLQKINLHEAGHEFEPKAAHPKPGSADLCFITDLDIDSL 81
Cdd:cd07253    1 IKRLDHLVLTVKDIERTIDFYTKVLGMTVVTFKEGRKALRFGNQKINLHQKGKEFEPKASAPTPGSADLCFITETPIDEV 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 515927853  82 LLHLRKQVVPIEEGPVRRSGALGPIESIYIRDPDMNLIEISRY 124
Cdd:cd07253   81 LEHLEACGVTIEEGPVKRTGALGPILSIYFRDPDGNLIELSNY 123
GloA COG0346
Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family [Secondary ...
3-122 8.38e-20

Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440115 [Multi-domain]  Cd Length: 125  Bit Score: 78.50  E-value: 8.38e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   3 RRLDHIVLTVQHMEETIRFYTNVLGMK---EETFGEGRKALRF----GLQKINLHEAGHEfepKAAHPKPGSADLCFITD 75
Cdd:COG0346    1 MGLHHVTLRVSDLEASLAFYTDVLGLElvkRTDFGDGGFGHAFlrlgDGTELELFEAPGA---APAPGGGGLHHLAFRVD 77
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 515927853  76 lDIDSLLLHLRKQVVPIEEGPVRRsgALGPIeSIYIRDPDMNLIEIS 122
Cdd:COG0346   78 -DLDAAYARLRAAGVEIEGEPRDR--AYGYR-SAYFRDPDGNLIELV 120
CatE COG2514
Catechol-2,3-dioxygenase [Secondary metabolites biosynthesis, transport and catabolism];
2-131 7.35e-18

Catechol-2,3-dioxygenase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442004 [Multi-domain]  Cd Length: 141  Bit Score: 73.84  E-value: 7.35e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   2 IRRLDHIVLTVQHMEETIRFYTNVLGMKEETFGEGRKALRF--GLQKINLHEAGhefEPKAAHPKPGSADLCFITDL--D 77
Cdd:COG2514    1 ITRLGHVTLRVRDLERSAAFYTDVLGLEVVEREGGRVYLRAdgGEHLLVLEEAP---GAPPRPGAAGLDHVAFRVPSraD 77
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 515927853  78 IDSLLLHLRKQVVPIeEGPVRRSGAlgpiESIYIRDPDMNLIEISRYIEEADPS 131
Cdd:COG2514   78 LDAALARLAAAGVPV-EGAVDHGVG----ESLYFRDPDGNLIELYTDRPRFEHV 126
Glyoxalase pfam00903
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;
4-121 7.43e-16

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;


Pssm-ID: 395724 [Multi-domain]  Cd Length: 121  Bit Score: 68.24  E-value: 7.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853    4 RLDHIVLTVQHMEETIRFYTNVLGMK--EETFGEGRKALRFGLQKIN--LHEAGHEFEPKAAHPKPGSADLCFITDL--D 77
Cdd:pfam00903   1 RIDHVALRVGDLEKSLDFYTDVLGFKlvEETDAGEEGGLRSAFFLAGgrVLELLLNETPPPAAAGFGGHHIAFIAFSvdD 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 515927853   78 IDSLLLHLRKQVVPIEEGPVRRSGALGpieSIYIRDPDMNLIEI 121
Cdd:pfam00903  81 VDAAYDRLKAAGVEIVREPGRHGWGGR---YSYFRDPDGNLIEL 121
VOC cd06587
vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed ...
7-121 3.14e-14

vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.


Pssm-ID: 319898 [Multi-domain]  Cd Length: 112  Bit Score: 64.08  E-value: 3.14e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   7 HIVLTVQHMEETIRFYTNVLGMKEETFGEGRKALRFGLQKiNLHEAGHEFEPKAAHPKPGSADLCFITDlDIDSLLLHLR 86
Cdd:cd06587    1 HVALRVPDLDASVAFYEEVLGFEVVSRNEGGGFAFLRLGP-GLRLALLEGPEPERPGGGGLFHLAFEVD-DVDEVDERLR 78
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 515927853  87 KQVVPIEEGPVRRSGALGpIESIYIRDPDMNLIEI 121
Cdd:cd06587   79 EAGAEGELVAPPVDDPWG-GRSFYFRDPDGNLIEF 112
VOC_like cd07245
uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate ...
5-121 3.76e-11

uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319909 [Multi-domain]  Cd Length: 117  Bit Score: 56.17  E-value: 3.76e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   5 LDHIVLTVQHMEETIRFYTNVLGMKEetfGEGRKALRFGL--------QKINLHEAGHEFEPKAAHPKPGSADLCFITDl 76
Cdd:cd07245    1 LDHVALACPDLERARRFYTDVLGLEE---VPRPPFLKFGGawlylgggQQIHLVVEQNPSELPRPEHPGRDRHPSFSVP- 76
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 515927853  77 DIDSLLLHLRKQVVPIeegpVRRSGALGPIESIYIRDPDMNLIEI 121
Cdd:cd07245   77 DLDALKQRLKEAGIPY----TESTSPGGGVTQLFFRDPDGNRLEF 117
VOC COG3324
Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family [General function ...
1-121 1.71e-09

Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family [General function prediction only];


Pssm-ID: 442553 [Multi-domain]  Cd Length: 119  Bit Score: 51.95  E-value: 1.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   1 MIRRLDHIVLTVQHMEETIRFYTNVLGMK-EETFGEGRKALRFGLQKinlhEAGHEFEPKAAHPKPGSADLCFITDlDID 79
Cdd:COG3324    1 MPGTIVWVELPVDDLERAKAFYEEVFGWTfEDDAGPGGDYAEFDTDG----GQVGGLMPGAEEPGGPGWLLYFAVD-DLD 75
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 515927853  80 SLLLHLRKQVVPIEEGPVRRSGAlGPIesIYIRDPDMNLIEI 121
Cdd:COG3324   76 AAVARVEAAGGTVLRPPTDIPPW-GRF--AVFRDPEGNRFGL 114
VOC_like cd07264
uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate ...
7-121 5.10e-07

uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319925 [Multi-domain]  Cd Length: 118  Bit Score: 45.40  E-value: 5.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   7 HIVLTVQHMEETIRFYTNVLGMKEETF-GEGRKA-LRFGLQKINLHEAGHEFEPKAAHPKPGSADLCFITDlDIDSLLLH 84
Cdd:cd07264    3 YIVLYVDDFAASLRFYRDVLGLPPRFLhEEGEYAeFDTGETKLALFSRKEMARSGGPDRRGSAFELGFEVD-DVEATVEE 81
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 515927853  85 LRKQVVPIEEGPVRRSGALgpiESIYIRDPDMNLIEI 121
Cdd:cd07264   82 LVERGAEFVREPANKPWGQ---TVAYVRDPDGNLIEI 115
ED_TypeI_classII_C cd08343
C-terminal domain of type I, class II extradiol dioxygenases, catalytic domain; This family ...
6-131 1.73e-06

C-terminal domain of type I, class II extradiol dioxygenases, catalytic domain; This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are type I, class II enzymes, and are composed of the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. A catalytically essential metal, Fe(II) or Mn(II), presents in all the enzymes in this family.


Pssm-ID: 319931  Cd Length: 132  Bit Score: 44.23  E-value: 1.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   6 DHIVLTVQHMEETIRFYTNVLGMK--EETFGEGRKALRFglQKINLHEAGHEFEPKAAhPKPGSADLCFITDlDIDSLLL 83
Cdd:cd08343    1 GHVVLCSPDVEASRDFYTDVLGFRvsDRIVDPGVDGGAF--LHCDRGTDHHTVALAGG-PHPGLHHVAFEVH-DLDDVGR 76
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 515927853  84 ---HLRKQVVPIEEGPVRRsgALGPIESIYIRDPDMNLIEISRYIEEADPS 131
Cdd:cd08343   77 ghdRLREKGYKIEWGPGRH--GLGSQVFDYWFDPSGNRVEYYTDGDLVDDD 125
VOC_ShValD_like cd16361
vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein; ...
4-124 4.23e-06

vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein; This subfamily of vicinal oxygen chelate (VOC) family protein includes Streptomyces hygroscopicus ValD protein and similar proteins. ValD protein functions in validamycin biosynthetic pathway. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319968  Cd Length: 150  Bit Score: 43.47  E-value: 4.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   4 RLDHIVLTVQHMEETIRFYTNVLG----------------MKEET---FGEGRKA-----LRFGlQKINLHEAghEF-EP 58
Cdd:cd16361    1 GVNHVGITVPDLDAAVEFYTDVLGaevvyrstplaegdrgGGEMRaagFVPGFARariamLRLG-PGPGIELF--EYkGP 77
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515927853  59 KAAHPKPGSAD-----LCFITDlDIDSLLLHLRKQ--VVPieeGPVRRSGALGPIE---SIYIRDPDMNLIEISRY 124
Cdd:cd16361   78 EQRAPVPRNSDvgifhFALQVD-DVEAAAERLAAAggKVL---MGPREIPDGGPGKgnrMVYLRDPWGTLIELVSH 149
GLOD4_N cd08358
N-terminal domain of human glyoxalase domain-containing protein 4 and similar proteins; ...
3-39 8.40e-06

N-terminal domain of human glyoxalase domain-containing protein 4 and similar proteins; Uncharacterized subfamily of the vicinal oxygen chelate (VOC) superfamily contains human glyoxalase domain-containing protein 4 and similar proteins. VOC is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319946  Cd Length: 127  Bit Score: 42.35  E-value: 8.40e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 515927853   3 RRLDHIVLTVQHMEETIRFYTNVLGMK---EETFGEGRKA 39
Cdd:cd08358    1 RRALHFVFKVGDRNKTIKFYREILGMKvlrHEEFEEGCKA 40
VOC_like cd08354
uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate ...
21-121 1.02e-05

uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319942  Cd Length: 122  Bit Score: 41.97  E-value: 1.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853  21 FYTNVLGMKEETFGEGRKALRFGLQKINLHEAGHEFEPKAAHPKP-----GSADLCF-ITDLDIDSLLLHLRKQVVPIEE 94
Cdd:cd08354   17 FYEDVLGLKPMLRSGRHAFFRLGPQVLLVFDPGATSKDVRTGEVPghgasGHGHFAFaVPTEELAAWEARLEAKGVPIES 96
                         90       100
                 ....*....|....*....|....*..
gi 515927853  95 gpVRRSGALGpiESIYIRDPDMNLIEI 121
Cdd:cd08354   97 --YTQWPEGG--KSLYFRDPAGNLVEL 119
BLMA_like cd08349
Bleomycin binding protein (BLMA) and similar proteins; BLMA also called Bleomycin resistance ...
9-119 2.74e-05

Bleomycin binding protein (BLMA) and similar proteins; BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.


Pssm-ID: 319937 [Multi-domain]  Cd Length: 114  Bit Score: 40.67  E-value: 2.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   9 VLTVQHMEETIRFYTNVLGMK------EETFgegrkaLRFGLQKINLH-EAGHEFEPKAahpkPGSAdlCFITDLDIDSL 81
Cdd:cd08349    3 ILPVRDIDKTLAFYVDVLGFEvdyerpPPGY------AILSRGGVELHlFEHPGLDPAG----SGVA--AYIRVEDIDAL 70
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 515927853  82 LLHLRKQVVPIEEGPvrrsgALGPIESI-------YIRDPDMNLI 119
Cdd:cd08349   71 HAELKAAGLPLFGIP-----RITPIEDKpwgmrefAVVDPDGNLL 110
FosB cd08363
fosfomycin resistant protein subfamily FosB; This subfamily family contains FosB, a fosfomycin ...
5-121 3.80e-05

fosfomycin resistant protein subfamily FosB; This subfamily family contains FosB, a fosfomycin resistant protein. FosB is a Mg(2+)-dependent L-cysteine thiol transferase. Fosfomycin inhibits the enzyme UDP-nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.


Pssm-ID: 319951 [Multi-domain]  Cd Length: 131  Bit Score: 40.41  E-value: 3.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   5 LDHIVLTVQHMEETIRFYTNVLGMKeeTFGEGRKALRFGLQKI----NLHE--AGHEFEPKAAHpkpgsadLCF-ITDLD 77
Cdd:cd08363    1 INHITFSVSNLNKSIAFYKDVLDAK--LLVLGEKTAYFDLNGLwlalNVQEdiPRNEISHSYTH-------IAFsIDEED 71
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 515927853  78 IDSLLLHLRKQVVPIEEGpvrRSGALGPIESIYIRDPDMNLIEI 121
Cdd:cd08363   72 LDAFKERLKDNGVNILEG---RKRDILEGQSIYFTDPDGHLFEL 112
PRK04101 PRK04101
metallothiol transferase FosB;
1-120 5.06e-05

metallothiol transferase FosB;


Pssm-ID: 179740  Cd Length: 139  Bit Score: 40.31  E-value: 5.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   1 MIRRLDHIVLTVQHMEETIRFYTNVLGmkEETFGEGRKALRFGLQK--INLHEAGH----EFEPKAAHpkpgsadLCF-I 73
Cdd:PRK04101   1 MLKGINHICFSVSNLEKSIEFYEKVLG--AKLLVKGRKTAYFDLNGlwIALNEEKDiprnEIHQSYTH-------IAFsI 71
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 515927853  74 TDLDIDSLLLHLRKQVVPIEEGpvrRSGALGPIESIYIRDPDMNLIE 120
Cdd:PRK04101  72 EEEDFDHWYQRLKENDVNILPG---RERDERDKKSIYFTDPDGHKFE 115
VOC_BsCatE_like_N cd07255
N-terminal of Bacillus subtilis CatE like protein; Uncharacterized subfamily of VOC ...
4-126 5.61e-05

N-terminal of Bacillus subtilis CatE like protein; Uncharacterized subfamily of VOC superfamily contains Bacillus subtilis CatE and similar proteins. CatE is proposed to function as Catechol-2,3-dioxygenase. VOC is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319918  Cd Length: 124  Bit Score: 39.99  E-value: 5.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   4 RLDHIVLTVQHMEETIRFYTNVLGMKEETFGEGRKALRFGLQK--INLHEAGHefEPKAAHPKPGSADLCFI--TDLDID 79
Cdd:cd07255    2 RIGRVTLKVADLERQSAFYQNVIGLSVLKQNASRAYLGVDGKQvlLVLEAIPD--AVLAPRSTTGLYHFAILlpDRKALG 79
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 515927853  80 SLLLHLrkqvvpIEEGPVRRSGALGPIESIYIRDPDMNLIEIsrYIE 126
Cdd:cd07255   80 RALAHL------AEHGPLIGAADHGVSEAIYLSDPEGNGIEI--YAD 118
HppD COG3185
4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and ...
1-30 9.99e-05

4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism, General function prediction only];


Pssm-ID: 442418 [Multi-domain]  Cd Length: 333  Bit Score: 40.26  E-value: 9.99e-05
                         10        20        30
                 ....*....|....*....|....*....|..
gi 515927853   1 MIRRLDHIVLTVQ--HMEETIRFYTNVLGMKE 30
Cdd:COG3185  143 GLTRIDHIGIAVPrgDLDEWVLFYEDVLGFEE 174
VOC_like cd08357
uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and ...
7-124 1.16e-04

uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and type I ring-cleaving dioxygenases; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319945 [Multi-domain]  Cd Length: 124  Bit Score: 38.90  E-value: 1.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   7 HIVLTVQHMEETIRFYTNVLGMKeetfgEGRKALR------FGLQkINLHEAGHefEPKAAHPKPGSADL------CFIT 74
Cdd:cd08357    2 HLAIPVRDLEAARDFYGDVLGCP-----EGRSSETwidfnfFGHQ-VVAHLVPN--YASTSTNAVDGHSVpvphfgLALT 73
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 515927853  75 DLDIDSLLLHLRKQVVPIEEGPVRR-SGALGPIESIYIRDPDMNLIEISRY 124
Cdd:cd08357   74 VDDFDALAERLKAAGVKFYIEPYVRfEGEPGEQWTMFLLDPSGNALEFKAM 124
PLN02300 PLN02300
lactoylglutathione lyase
2-29 1.26e-04

lactoylglutathione lyase


Pssm-ID: 215169 [Multi-domain]  Cd Length: 286  Bit Score: 40.15  E-value: 1.26e-04
                         10        20
                 ....*....|....*....|....*...
gi 515927853   2 IRRLDHIVLTVQHMEETIRFYTNVLGMK 29
Cdd:PLN02300  22 KRRMLHVVYRVGDLDRTIKFYTECLGMK 49
glyox_I TIGR00068
lactoylglutathione lyase; Lactoylglutathione lyase is also known as aldoketomutase and ...
3-42 2.08e-04

lactoylglutathione lyase; Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other]


Pssm-ID: 272886  Cd Length: 150  Bit Score: 38.63  E-value: 2.08e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 515927853    3 RRLDHIVLTVQHMEETIRFYTNVLGMK---EETFGEGRKALRF 42
Cdd:TIGR00068  16 RRLLHTMLRVGDLDKSLDFYTEVLGMKllrKRDFPEMKFSLAF 58
VOC_like cd07263
uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate ...
7-121 7.09e-04

uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping


Pssm-ID: 319924 [Multi-domain]  Cd Length: 120  Bit Score: 36.89  E-value: 7.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   7 HIVLTVQHMEETIRFYTNVLGM---KEETFGEGR---------KALRFGLQKiNLHEAGHEFEPKAAHPKPGsadLCFIT 74
Cdd:cd07263    1 QVMLYVDDQDKALDFYVEKLGFevvEDVPMGGMRwvtvappgsPGTSLLLEP-KAHPAQMPQSPEAAGGTPG---ILLAT 76
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 515927853  75 DlDIDSLLLHLRKQVVPIEEGPVrrsgALGPIESIYIRDPDMNLIEI 121
Cdd:cd07263   77 D-DIDATYERLTAAGVTFVQEPT----QMGGGRVANFRDPDGNLFAL 118
FosA cd07244
fosfomycin resistant protein subfamily FosA; This subfamily family contains FosA, a fosfomycin ...
5-29 8.90e-04

fosfomycin resistant protein subfamily FosA; This subfamily family contains FosA, a fosfomycin resistant protein. FosA is a Mn(II) and K(+)-dependent glutathione transferase. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.


Pssm-ID: 319908 [Multi-domain]  Cd Length: 121  Bit Score: 36.49  E-value: 8.90e-04
                         10        20
                 ....*....|....*....|....*
gi 515927853   5 LDHIVLTVQHMEETIRFYTNVLGMK 29
Cdd:cd07244    2 INHITLAVSDLERSLAFYVDLLGFK 26
MMCE cd07249
Methylmalonyl-CoA epimerase (MMCE); MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) ...
5-104 1.57e-03

Methylmalonyl-CoA epimerase (MMCE); MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.


Pssm-ID: 319912 [Multi-domain]  Cd Length: 127  Bit Score: 36.01  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   5 LDHIVLTVQHMEETIRFYTNVLGMKEETFGEGRKA------LRFGLQKINLHEAGHEFEPKAA---HPKPGSADLCFITD 75
Cdd:cd07249    1 LDHIGIAVPDLDEALKFYEDVLGVKVSEPEELEEQgvrvafLELGNTQIELLEPLGEDSPIAKfldKKGGGLHHIAFEVD 80
                         90       100       110
                 ....*....|....*....|....*....|
gi 515927853  76 lDIDSLLLHLRKQ-VVPIEEGPvrRSGALG 104
Cdd:cd07249   81 -DIDAAVEELKAQgVRLLSEGP--RIGAHG 107
Glyoxalase_3 pfam13468
Glyoxalase-like domain; This domain is related to the Glyoxalase domain pfam00903.
5-115 1.74e-03

Glyoxalase-like domain; This domain is related to the Glyoxalase domain pfam00903.


Pssm-ID: 433233  Cd Length: 175  Bit Score: 36.54  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853    5 LDHIVLTVQHMEETIRFYTNVLGMK------EETFGEGRKALRFGLQKINLHEAGHEfEPKAAHPK----------PGSA 68
Cdd:pfam13468   1 LDHVVLAVPDLDEAAARFARALGFTvtpggrHPGMGTANALIMFGDGYLELLAVDPE-APAPPRGRwfgldrladgEGLL 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 515927853   69 DLCFITDlDIDSLLLHLRKQVVPiEEGPVRRSGALGPIESIYIRDPD 115
Cdd:pfam13468  80 GWALRTD-DIDAVAARLRAAGVE-PGRRVRPDGGDLRWRLLFLADGA 124
PhnB COG2764
Zn-dependent glyoxalase, PhnB family [Energy production and conversion];
8-122 2.54e-03

Zn-dependent glyoxalase, PhnB family [Energy production and conversion];


Pssm-ID: 442048 [Multi-domain]  Cd Length: 118  Bit Score: 35.22  E-value: 2.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   8 IVLTVQHMEETIRFYTNVLGMKEE---TFGEGRKA---LRFGLQKINLHEAghefEPKAAHPKPGSADLCFITDlDIDSL 81
Cdd:COG2764    4 PYLVVDDAEEALEFYEDVFGFEVVfrmTDPDGKIMhaeLRIGGSVLMLSDA----PPDSPAAEGNGVSLSLYVD-DVDAL 78
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 515927853  82 LLHLRKQ----VVPIEE---GPvrRSGalgpiesiYIRDPDMNLIEIS 122
Cdd:COG2764   79 FARLVAAgatvVMPLQDtfwGD--RFG--------MVRDPFGVLWMIN 116
HPPD_C_like cd07250
C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate synthase ...
2-41 2.68e-03

C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate synthase (HmaS); HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, substrates, do not use alpha-ketoglutarate, and incorporate both atoms of dioxygen into the aromatic product. Both HPPD and HmaS exhibit duplicate beta barrel topology in their N- and C-terminal domains which share sequence similarity, suggestive of a gene duplication. Each protein has only one catalytic site located in at the C-terminal domain. This HPPD_C_like domain represents the C-terminal domain.


Pssm-ID: 319913  Cd Length: 194  Bit Score: 35.99  E-value: 2.68e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 515927853   2 IRRLDHIVLTV--QHMEETIRFYTNVLGMKE------ETFGEGRKALR 41
Cdd:cd07250    1 LTRIDHVVGNVpdGEMDPAVEWYEKCLGFHRfwefddEDIGTEYSGLR 48
Fosfomycin_RP cd08345
Fosfomycin resistant protein; This family contains three types of fosfomycin resistant protein. ...
7-120 4.67e-03

Fosfomycin resistant protein; This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.


Pssm-ID: 319933  Cd Length: 118  Bit Score: 34.46  E-value: 4.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   7 HIVLTVQHMEETIRFYTNVLGMKEEtfgEGRKALRFGLQKINLHEAGHEFEPKAAHPKPGSAD---LCF-ITDLDIDSLL 82
Cdd:cd08345    1 HITLIVRDLEKSTAFLQDIFGAREV---YSSGDKTFSLSKEKFFLLGGLWIALMEGESLQERSythIAFqIQSEDFDRYA 77
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 515927853  83 LHLRKQVVpiEEGPVRRSgALGPIESIYIRDPDMNLIE 120
Cdd:cd08345   78 ERLGALGV--EMRPPRPR-VEGEGRSIYFYDPDNHLFE 112
GLOD4_C cd16357
C-terminal domain of human glyoxalase domain-containing protein 4 and similar proteins; ...
7-49 6.55e-03

C-terminal domain of human glyoxalase domain-containing protein 4 and similar proteins; Uncharacterized subfamily of the vicinal oxygen chelate (VOC) superfamily contains human glyoxalase domain-containing protein 4 and similar proteins. VOC is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319964  Cd Length: 114  Bit Score: 34.07  E-value: 6.55e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 515927853   7 HIVLTVQHMEETIRFYTNVLGMKEETFGEGRKALRFGLQKINL 49
Cdd:cd16357    1 KVSLAVSDLEKSIDYWSDLLGMKVFEKSEKSALLGYGEDQAKL 43
GlxI_Ni cd16358
Glyoxalase I that uses Ni(++) as cofactor; This family includes Escherichia coil and other ...
7-29 8.39e-03

Glyoxalase I that uses Ni(++) as cofactor; This family includes Escherichia coil and other prokaryotic glyoxalase I that uses nickel as cofactor. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic glyoxalase I uses nickel. However, eukaryotic Trypanosomatid parasites also use nickel as a cofactor, which could possibly be explained by acquiring their GLOI gene by horizontal gene transfer. Human glyoxalase I is a two-domain enzyme and it has the structure of a domain-swapped dimer with two active sites located at the dimer interface. In yeast, in various plants, insects and Plasmodia, glyoxalase I is four-domain, possibly the result of a further gene duplication and an additional gene fusing event.


Pssm-ID: 319965 [Multi-domain]  Cd Length: 122  Bit Score: 33.91  E-value: 8.39e-03
                         10        20
                 ....*....|....*....|...
gi 515927853   7 HIVLTVQHMEETIRFYTNVLGMK 29
Cdd:cd16358    3 HTMLRVGDLDRSIKFYTEVLGMK 25
VOC_Bs_YwkD_like cd08352
vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins; ...
3-99 9.71e-03

vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins; uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319940 [Multi-domain]  Cd Length: 123  Bit Score: 33.67  E-value: 9.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515927853   3 RRLDHIVLTVQHMEETIRFYTNVLGMK--EETFGEGRKA----LRFGLQKINLheagheFEPKAAHPKP------GSADL 70
Cdd:cd08352    1 KKIHHIAIICSDYEKSKDFYVDKLGFEiiREHYRPERNDikldLALGGYQLEL------FIKPDAPARPsypealGLRHL 74
                         90       100
                 ....*....|....*....|....*....
gi 515927853  71 CFITDlDIDSLLLHLRKQVVPIEegPVRR 99
Cdd:cd08352   75 AFKVE-DVEATVAELKSLGIETE--PIRV 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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