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Conserved domains on  [gi|515929435|ref|WP_017360018|]
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MULTISPECIES: flagellar hook-basal body protein [Bacillus]

Protein Classification

flagellar hook-basal body protein( domain architecture ID 11469169)

flagellar hook-basal body protein similar to Bacillus subtilis flagellar hook-basal body complex proteins FlhP and FlhO, and Caulobacter crescentus flagellar basal-body rod protein FlgF

Gene Ontology:  GO:0071973

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-276 1.51e-66

Flagellar basal body rod protein FlgG [Cell motility];


:

Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 207.74  E-value: 1.51e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   5 LYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAFPEMLLSRMESgrfQTSSGKGFSIPQQtaiggINTGTYMQE 84
Cdd:COG4786    1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYQLIRRPGA---PSSQGTQTPVGLQ-----LGTGVRVAA 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  85 LIPQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRALLSVTGqP 162
Cdd:COG4786   73 TQTDFTQGSLQQTGNPLDLAIEGDG-------------FFQVQTPDGeTAYTRDGSFQLDADGQLvTSDGYPVLPENG-P 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 163 ITVQS--ENFKVNADGTVS-----ENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNGQM-SYTLSQGVSE 234
Cdd:COG4786  139 ITIPEdaTSITISEDGTVSvtladGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDgLGTLRQGYLE 218

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 515929435 235 LSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIG 276
Cdd:COG4786  219 GSNVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLRG 260
 
Name Accession Description Interval E-value
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-276 1.51e-66

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 207.74  E-value: 1.51e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   5 LYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAFPEMLLSRMESgrfQTSSGKGFSIPQQtaiggINTGTYMQE 84
Cdd:COG4786    1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYQLIRRPGA---PSSQGTQTPVGLQ-----LGTGVRVAA 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  85 LIPQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRALLSVTGqP 162
Cdd:COG4786   73 TQTDFTQGSLQQTGNPLDLAIEGDG-------------FFQVQTPDGeTAYTRDGSFQLDADGQLvTSDGYPVLPENG-P 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 163 ITVQS--ENFKVNADGTVS-----ENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNGQM-SYTLSQGVSE 234
Cdd:COG4786  139 ITIPEdaTSITISEDGTVSvtladGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDgLGTLRQGYLE 218

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 515929435 235 LSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIG 276
Cdd:COG4786  219 GSNVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLRG 260
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-278 4.70e-43

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 147.54  E-value: 4.70e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAFPEMLLSrmesGRFQTSSGKgfsiPQQTAIGGINTGT 80
Cdd:PRK12818   1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIE----NYDKKVGNK----NVKNIIGGLSMGS 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  81 YMQELIPQFTQGTLKTTDQTTDIALvennvpinpetnqKSALFYAVNTPEGVR-YTKSSSITLNDQNQL------TINGR 153
Cdd:PRK12818  73 KIDEVNTLFTQGIIKSTDKPTDFAI-------------QGRGFFTVERNAGNNyYTRDGHFHVDTQGYLvndsgyYVLGR 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 154 ALLSVTGQPITVQSENFKVNADGTVSENGQNLGQIDVRVAMDTRNLAREGNDLYrTADNqplPSAVNNgqmsYTLSQGVS 233
Cdd:PRK12818 140 NNATGAREPINVGNGKFSTDADGNISLDGNASYKFNVADFNDYNSLKKIGDNLY-TGNN---PQNING----AIVRQNSL 211

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 515929435 234 ELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIGRV 278
Cdd:PRK12818 212 EKSNVNVTNEMVNMMTTMRSFETNQKIVQSIDETLGKAVNEVGSV 256
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 3-257 2.84e-37

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 131.61  E-value: 2.84e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435    3 KGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAfpemLLSRMESGRFQTSSGkgfsipqqTAIGGINTgtym 82
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQD----LLSQSVSGSGQVGGG--------VRTSGVAT---- 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   83 qelipQFTQGTLKTTDQTTDIALvennvpinpetNQKSalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRALLSVTG 160
Cdd:TIGR03506  65 -----DFSQGSLQSTGNSLDLAI-----------SGDG--FFVVQTPDGsEAYTRAGSFKLDADGYLvTSDGYPLLDWGG 126

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  161 QPITV--QSENFKVNADGTVS-----ENGQNLGQIDVRVAMDTRNLAREGNDLYRTADN--QPLPSAVNNGQMSyTLSQG 231
Cdd:TIGR03506 127 GPITLppDAGSVSIGEDGTVSatysnGQTVELGQIALANFPNPDGLRKEGGNLYSATPGsgAALVGAPGTGGFG-TLVSG 205

                         250       260
                  ....*....|....*....|....*.
gi 515929435  232 VSELSNVDVTKSYTEMTTAYRAFETN 257
Cdd:TIGR03506 206 ALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 197-273 3.45e-13

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 63.44  E-value: 3.45e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515929435  197 RNLAREGNDLYRTADNQPLPSAVNNGqmsyTLSQGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVN 273
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPILGAGADG----RVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
 
Name Accession Description Interval E-value
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-276 1.51e-66

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 207.74  E-value: 1.51e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   5 LYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAFPEMLLSRMESgrfQTSSGKGFSIPQQtaiggINTGTYMQE 84
Cdd:COG4786    1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYQLIRRPGA---PSSQGTQTPVGLQ-----LGTGVRVAA 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  85 LIPQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRALLSVTGqP 162
Cdd:COG4786   73 TQTDFTQGSLQQTGNPLDLAIEGDG-------------FFQVQTPDGeTAYTRDGSFQLDADGQLvTSDGYPVLPENG-P 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 163 ITVQS--ENFKVNADGTVS-----ENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNGQM-SYTLSQGVSE 234
Cdd:COG4786  139 ITIPEdaTSITISEDGTVSvtladGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDgLGTLRQGYLE 218

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 515929435 235 LSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIG 276
Cdd:COG4786  219 GSNVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLRG 260
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-278 4.70e-43

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 147.54  E-value: 4.70e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAFPEMLLSrmesGRFQTSSGKgfsiPQQTAIGGINTGT 80
Cdd:PRK12818   1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIE----NYDKKVGNK----NVKNIIGGLSMGS 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  81 YMQELIPQFTQGTLKTTDQTTDIALvennvpinpetnqKSALFYAVNTPEGVR-YTKSSSITLNDQNQL------TINGR 153
Cdd:PRK12818  73 KIDEVNTLFTQGIIKSTDKPTDFAI-------------QGRGFFTVERNAGNNyYTRDGHFHVDTQGYLvndsgyYVLGR 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 154 ALLSVTGQPITVQSENFKVNADGTVSENGQNLGQIDVRVAMDTRNLAREGNDLYrTADNqplPSAVNNgqmsYTLSQGVS 233
Cdd:PRK12818 140 NNATGAREPINVGNGKFSTDADGNISLDGNASYKFNVADFNDYNSLKKIGDNLY-TGNN---PQNING----AIVRQNSL 211

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 515929435 234 ELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIGRV 278
Cdd:PRK12818 212 EKSNVNVTNEMVNMMTTMRSFETNQKIVQSIDETLGKAVNEVGSV 256
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 3-257 2.84e-37

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 131.61  E-value: 2.84e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435    3 KGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAfpemLLSRMESGRFQTSSGkgfsipqqTAIGGINTgtym 82
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQD----LLSQSVSGSGQVGGG--------VRTSGVAT---- 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   83 qelipQFTQGTLKTTDQTTDIALvennvpinpetNQKSalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRALLSVTG 160
Cdd:TIGR03506  65 -----DFSQGSLQSTGNSLDLAI-----------SGDG--FFVVQTPDGsEAYTRAGSFKLDADGYLvTSDGYPLLDWGG 126

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  161 QPITV--QSENFKVNADGTVS-----ENGQNLGQIDVRVAMDTRNLAREGNDLYRTADN--QPLPSAVNNGQMSyTLSQG 231
Cdd:TIGR03506 127 GPITLppDAGSVSIGEDGTVSatysnGQTVELGQIALANFPNPDGLRKEGGNLYSATPGsgAALVGAPGTGGFG-TLVSG 205

                         250       260
                  ....*....|....*....|....*.
gi 515929435  232 VSELSNVDVTKSYTEMTTAYRAFETN 257
Cdd:TIGR03506 206 ALEGSNVDLAEELVNMISAQRAYQAN 231
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 1-273 4.07e-30

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 113.70  E-value: 4.07e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKAdegAMRAFPEMLlSRMESGRFQTSSGKGFSIPQQ----TAIGGI 76
Cdd:PRK12636   1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFKK---SRVTFKDMV-SQTISGASGPTANRGGVNSKQvglgSQLGAI 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  77 NTgtymqelipQFTQGTLKTTDQTTDIAlvennvpINPETnqksalFYAVNTPEGVRYTKSSSITLNDQ-NQLTINGRAL 155
Cdd:PRK12636  77 DT---------IHTQGSLQTTGRPLDLA-------ISGDG------FFRVGDGDNTAYTRAGNFYLDNEgNIVNADGLYL 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 156 LSVTGQPITVQS--ENFKVNADGTVS--ENGQNL---GQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNG-QMSYT 227
Cdd:PRK12636 135 LGMNGGRIQIPTdaQSFSIGADGTVSyvDAGGELqtaGQIGLATFANPDGLEKAGDNLYRETLNSGTPSAVVPGeGGTGK 214

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 515929435 228 LSQGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVN 273
Cdd:PRK12636 215 IVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVN 260
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 5-273 1.37e-28

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 109.75  E-value: 1.37e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435    5 LYTATSAMIAQERRTEMLSNNIANANTPGYKADegamRAFPEMLLSRMESGRFQTSSGKGFSIPQQTAIGginTGTYMQE 84
Cdd:TIGR02488   2 LWTAATGMNAQQTNMDVISNNLANVNTTGFKKD----RAEFEDLLYQTERQPGAQSSEQQTILPVGVQVG---LGVRVVA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   85 LIPQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRALLSvtgqP 162
Cdd:TIGR02488  75 TQKLFTQGSLQNTGNDLDLAIEGEG-------------FFQVLMPDGtTAYTRDGAFKINAEGQLvTSNGYPLQP----E 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  163 ITV--QSENFKVNADGTVS------ENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNGQMSY-TLSQGVS 233
Cdd:TIGR02488 138 ITIpeNATSITVGSDGEVSvrqggqTEPQEVGQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFgKLRQGFL 217

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 515929435  234 ELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVN 273
Cdd:TIGR02488 218 EASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQ 257
flgF PRK12690
flagellar hook-basal body complex protein;
6-277 4.26e-27

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 105.15  E-value: 4.26e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   6 YTATSAMIAQERRTEMLSNNIANANTPGYKAdEGAMraFPEMLlSRMESGrfQTSSGKGFSIPQQTaiggintgtymqel 85
Cdd:PRK12690   6 YTTLTRQSGLMREMQVVANNIANASTTGFRR-EGLV--FSEYV-KSLDSG--EASLSMARASGRQT-------------- 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  86 ipQFTQGTLKTTDQTTDIAlvennvpINPETnqksalFYAVNTPEGVRYTKSSSITLNDQNQL-TINGRALLSVTGQPIT 164
Cdd:PRK12690  66 --DLEQGGLTQTGGQFDFA-------IEGEG------FFMVETPQGERLTRAGSFTPNAEGELvDPDGNRLLDAGGAPIF 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 165 V--QSENFKVNADGTVSENGQNLGQIDVRVAMDTRNLAREGNDLYRTADN-QPLPSAvnngqmsyTLSQGVSELSNVDVT 241
Cdd:PRK12690 131 IppDARSVAVGADGTLSADGQPLGQIGLYQPTDPLGLRREGGTRFRAEGGvEPAEGA--------RLLQGFLEGSNVNPV 202

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 515929435 242 KSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIGR 277
Cdd:PRK12690 203 SEIARMIEVQRAYELGQSFLDREDERIRTTIRTLGQ 238
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-273 4.67e-25

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 100.32  E-value: 4.67e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADegamRAFPEMLLsrmesgrFQTSSGKGFSIPQQTAI-GGINTG 79
Cdd:PRK12693   1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTGFKKS----RAVFEDLL-------YQTIRQPGAQSSQNTTLpSGLQVG 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  80 TYMQELIPQ--FTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRAL 155
Cdd:PRK12693  70 TGVRPVATQkiFTQGNLQQTGNSLDVAIEGQG-------------FFQVQLPDGtIAYTRDGSFKLDQDGQLvTSGGYPL 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 156 lsvtgQP-ITV--QSENFKVNADGTVS------ENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNGQMSY 226
Cdd:PRK12693 137 -----QPeITIpeNATSITIGTDGTVSvtqagqAAPQVVGQITLTDFINPAGLESIGENLYLETAASGAPIEGTPGLNGL 211

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 515929435 227 -TLSQGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVN 273
Cdd:PRK12693 212 gTLRQGFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQ 259
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 1-265 1.16e-24

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 99.38  E-value: 1.16e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEgamRAFPEMLLSRMESGRFQTSSGkgfsipqQTAIGGinTGT 80
Cdd:PRK12817   1 MLRAFWNSKSGMNAQQEKLDSISNNLANVNTTGYKRED---VSFSDLVYETLDRKGYPTNDK-------PEIITG--TGV 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  81 YMQELIPQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEG-VRYTKSSSITLN--------DQNQLTIN 151
Cdd:PRK12817  69 KATNWIRDNQQGNLLTTGNKTDLAIDGEG-------------FFRVIMADGtYAYTRAGNFNIDsngmlvddNGNRLEIQ 135

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 152 GRALLSVTGQPITVQSENFKVNADGTVS-----ENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQpLPSAVNNgqmsY 226
Cdd:PRK12817 136 LEAGVGINNRNTGFDSNNFTVDEDGGISvknvdGQNKKVGKINIYNAVGNDAFISIGDNLYVPSDGV-QVFLNND----V 210

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 515929435 227 TLSQGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYD 265
Cdd:PRK12817 211 DILQGYLENSNVDLGKEMTDMIITQRAFQLSSKGIKTAD 249
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-276 8.91e-24

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 96.27  E-value: 8.91e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEgamRAFPEMLLSRMESGRFQTSSGKGFsipqqtaiggINTGT 80
Cdd:PRK12642   1 MQSGLYVALSSQMALEKRLDTIADNVANVNTVGFRATE---VKFDTVVSDTASKKVAFVSQGKSY----------LSTEA 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  81 ymqelipqftqGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEGVRYTKSSSITLNDQNQL-TINGRALLSVT 159
Cdd:PRK12642  68 -----------GPLTKTGNPLDFAVKGDA-------------WFSFDTPAGQVYTRDGRFTMTSTGELvSVTGYPVLDAG 123

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 160 GQPITVQSEN--FKVNADGTVSENGQNLGQIDVRVAMDTRNLAREGNDLYRTADN-QPLPSAVNNGQMsytlsQGVSELS 236
Cdd:PRK12642 124 GAPIQLNPGGgePTIGADGAIYQNGVQVGAIGLFEIDADAGLLRYGNSGVIPDKPpQPVVDRNSVGVV-----QGYLEGS 198

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 515929435 237 NVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIG 276
Cdd:PRK12642 199 NVNAMTEMTQLISVSRAFESVSSLMRQSESSVSEAIKTLG 238
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-273 8.03e-21

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 89.10  E-value: 8.03e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKadegAMRAFPEMLLsrmesgrFQTSSGKGFSIPQQTAIG-GINTG 79
Cdd:PRK12816   1 MMRSLWTAASGMNAQQFNIDTIANNLANVNTTGFK----KIRAEFEDLI-------YQTQRRAGTPATEDTVTPlGVQVG 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  80 TYMQELIPQ--FTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRAL 155
Cdd:PRK12816  70 HGVKVAATQrlFEQGSLQATGNKLDVAIEGEG-------------FFKILMPDGtYAYTRDGSFKIDANGQLvTSNGYRL 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 156 LsvtgqPITVQSENFKVNADgTVSENGQ------------NLGQIDVRVAMDTRNLAREGNDLYR--TADNQPLPSAVNN 221
Cdd:PRK12816 137 L-----PEIIFPENYILNSI-TISEEGIvsvkvgedndpiELGQIELYRFVNPAGLSAIGKNLFKetIASGQEIPGIPGS 210

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 515929435 222 GQMSYTLsQGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVN 273
Cdd:PRK12816 211 EGFGRVL-QGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANN 261
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-271 8.69e-21

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 88.37  E-value: 8.69e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATS----AMIAQErrteMLSNNIANANTPGYKADEGAMRAFPEMllsrmesgrfqtssgkGFSIPQQTAIGGI 76
Cdd:PRK12640   1 MDRALYTAMSgasqNLNQQA----VVANNLANASTPGFRADLAQARAVPVF----------------GEGLPTRVFALAS 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  77 NTGTymqelipQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEGVR-YTKSSSITLNDQNQL-TINGRA 154
Cdd:PRK12640  61 TPGA-------DFSPGPLQTTGRPLDVALQGDG-------------WLAVQAPDGSEaYTRNGSLQVDANGQLrTANGLP 120

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 155 LLSVTGqPITV-QSENFKVNADGTVS--------ENGQNLGQIDVrVAMDTRNLAREGNDLYRTADNQPLPSAVNngqms 225
Cdd:PRK12640 121 VLGDGG-PIAVpPGAKITIGADGTISalppgdppNAVAEVGRLKL-VNPPAAQLTRGDDGLFRTTDGAPAPADPT----- 193

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 515929435 226 YTLSQGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKA 271
Cdd:PRK12640 194 VRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQAA 239
flgF PRK12689
flagellar basal-body rod protein FlgF;
1-249 5.37e-20

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 86.34  E-value: 5.37e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEgamRAFPEMLLSRMESGRFQTSSGKgFSIPQqtaiggiNTGT 80
Cdd:PRK12689   1 MQNALLVGLSRQMALERQLDVVANNVANVNTNGFKARS---SLFQEYLMPGAHEDNFQRPDRR-VSYVQ-------DRGT 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  81 YMQelipqFTQGTLKTTDQTTDIALvennvpinpetnqKSALFYAVNTPEGVRYTKSSSITLNDQNQL-TINGRALLSvT 159
Cdd:PRK12689  70 PLD-----LSQGPLEQTKNPLDVAI-------------DGDAFLAVQTPQGERYTRDGALEINAQGQLvTSDGYPVLG-T 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 160 GQPITVQSENFKVN--ADGTVSEN------GQNLGQIDVRVAMDTRNLAREGNDLYR-TADNQP--LPSAVNNGQMSYTL 228
Cdd:PRK12689 131 GGPITFQPTDTGIAisPDGTVSVNegtattDSIRGKLRLVTFANPQALKKEGANLYAaTAPARPadTKARVEQGYIERSN 210

                        250       260
                 ....*....|....*....|..
gi 515929435 229 SQGVSELSN-VDVTKSYTEMTT 249
Cdd:PRK12689 211 VNPVLEMTRmMEVNRTYTQVSS 232
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 2-266 1.83e-18

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 82.59  E-value: 1.83e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   2 LKGLYTATSAMIAQERRTEMLSNNIANANTPGYKadeGAMRAFPEML--LSRMESGRFQTSSGkgfSIPQQTAIGGINTG 79
Cdd:PRK12692   1 MRALAIAATGMSAQQLNLEVIANNIANLNTTGFK---GARAEFTDLLyqAERQQGVPNQAGQE---AVPEGAMLGLGVRA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  80 TYMQELipqFTQGTLKTTDQTTDIALvennvpinpetNQKSalFYAVNTPEG-VRYTKSSSITLNDQNQL-TINGRALls 157
Cdd:PRK12692  75 AAIRNL---HRQGSLAQTGNQLDLAV-----------NGRG--YFQVTSPNGeIQYTRAGSFNKNAAGQLvTMEGYAV-- 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 158 vtgQPITVQSENfkvNADGTVSENGQNLGQIDVRVA------MDTRNLARE------GNDLYRTADNQPLPSAVNNGQMS 225
Cdd:PRK12692 137 ---DPAILIPQN---TTQVTINESGQVFAKIDGQVApqnlgqLTLANFANEsgleplGNGLYRETPASGAPVVGNPGDVG 210

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 515929435 226 Y-TLSQGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDK 266
Cdd:PRK12692 211 FgKIQQGYLEGSNVDPVKEITSLITAQRAFEMNSKVIQAADE 252
flgG PRK12819
flagellar basal-body rod protein FlgG;
2-277 2.69e-17

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 79.15  E-value: 2.69e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   2 LKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAFPEMLLSRMESgrfqtssgkgfsiPQQTAIGGINTGTY 81
Cdd:PRK12819   1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGD-------------GAVTNIGSVDYAVV 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  82 MQELIPQFTQGTLKTTDQTTDIALVENnvpinpeTNQKSALFYAVNTPEgVRYTKSSSITLNDQNQL-TINGRALLSVTG 160
Cdd:PRK12819  68 PAATHVNLVQGNIQMTNSDTDFFLDDG-------PAGTSSFFVTSKNGE-TFLTRDGSFTLNSDRYLqTASGAFVMGENN 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 161 QPITV-QSENFKVNADGTV--SENGQNLGQIDVRV--AMDTRNLAREGNDLYRTA--DNQPLPSAVNNGQmsytlsQGVS 233
Cdd:PRK12819 140 ERIRIpEGAKVAVQADGTLydAVTQNNIARLQTKTvsAEQNDRLVQRENKSFTLAegNIANLPNGQGIVK------NGML 213

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 515929435 234 ELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIGR 277
Cdd:PRK12819 214 ENSNVDMTKEMADLMTDQRMIQASQRVMTSFDKIYEKEANEILR 257
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 169-255 1.34e-13

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 64.96  E-value: 1.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  169 NFKVNADGTVSENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNGQMsytlsQGVSELSNVDVTKSYTEMT 248
Cdd:TIGR02490   8 DITIGADGTISQDGEEVGRLGLVNFDNPNQLQREGDGLFRATGGGPAPADSNVRVV-----QGYLEGSNVNAVSEMVDMI 82


                  ....*..
gi 515929435  249 TAYRAFE 255
Cdd:TIGR02490  83 EAQRAYE 89
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 197-273 3.45e-13

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 63.44  E-value: 3.45e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515929435  197 RNLAREGNDLYRTADNQPLPSAVNNGqmsyTLSQGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVN 273
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPILGAGADG----RVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-190 3.60e-12

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 65.96  E-value: 3.60e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKAdegamrafpemllSRMEsgrFQT--SSGKGFSIPQQTAiGGINT 78
Cdd:COG1749    1 MMMSFNTGVSGLNAASTALDVIGNNIANSNTVGFKS-------------SRAE---FADlvAQSLSGANPTQVG-GGVRV 63

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  79 GTYMQelipQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEG-VRYTKSSSITLNDQNQLtingralls 157
Cdd:COG1749   64 ASVAQ----IFTQGSLQSTGNALDLAISGNG-------------FFVVSDSGGqTYYTRAGSFSLDKDGYL--------- 117

                        170       180       190
                 ....*....|....*....|....*....|...
gi 515929435 158 VTGQPITVQSenFKVNADGTVSENGQNLGQIDV 190
Cdd:COG1749  118 VNSSGLYLQG--YPADADGTIPDTGGGLEPIQI 148
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-271 1.79e-09

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 56.87  E-value: 1.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEgamrafpeMLLSRMESGRFQTSSGKGFsipqqtaigginTGT 80
Cdd:PRK12641   1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKF--------ILAIQNHNVKNLYNSDKKI------------TKE 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  81 YMQelipqFTQGTLKTTDQTTDIALVENNVPINPETNQKSAlfyavntpegvrYTKSSSITLNDQNQLTINGRALLSVTG 160
Cdd:PRK12641  61 YYN-----LSPGTLRYTGRNLDLFIKDNGWLTIKDTNGQEA------------YTKNGHLKINSKRKLTVQNNEVIGNNG 123

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 161 QPITVQSENFKVNADGTVSENGQN--------LGQIDVrVAMDTRNLAREGNDLYRTADNQPLPSAVNNG---QMSYTLS 229
Cdd:PRK12641 124 NIIIPKNINLKISSNGVITSIKNNhkhivetkIGSLKL-VQLPSQDLIQKENGLFYLKKNNEINKKHTKNikhSSKIRVQ 202

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 515929435 230 QGVSELSNVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKA 271
Cdd:PRK12641 203 SGMLEESNVNASKNMIEMISNARQFEMQMKIISMCDQNTEYA 244
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-179 1.33e-08

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 54.08  E-value: 1.33e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEGAMRAFPEmllsrmesgrfqtssgKGFSIPQQTAIGGINTGT 80
Cdd:PRK12643   1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPI----------------DGPSLATRTMVTTSTPGV 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435  81 ymqelipQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEGVR-YTKSSSITLNDQNQLTINGRALLSVT 159
Cdd:PRK12643  65 -------DISQGTMNFSGRPLDVALQQDG-------------YLAVQLPDGSEaYTRNGNIQISANGQMTVQGYPLMGDN 124

                        170       180
                 ....*....|....*....|.
gi 515929435 160 GqPITVQSE-NFKVNADGTVS 179
Cdd:PRK12643 125 G-PIDVPPQaAVTIAADGTIS 144
Flg_bb_rod pfam00460
Flagella basal body rod protein;
5-34 2.44e-07

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 46.02  E-value: 2.44e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 515929435    5 LYTATSAMIAQERRTEMLSNNIANANTPGY 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
flgE PRK05682
flagellar hook protein FlgE; Validated
 3-149 5.70e-07

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 50.22  E-value: 5.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   3 KGLYTATSAMIAQERRTEMLSNNIANANTPGYKAdegAMRAFPEMLLSRMESGRFQTSSGkgfsipqqTAIGGINTgtym 82
Cdd:PRK05682   1 MSFNTAVSGLNAASNRLDVIGNNIANANTTGFKS---SRAEFADLYANSAGTNPTQVGSG--------VKVAGVAQ---- 65

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515929435  83 qelipQFTQGTLKTTDQTTDIALVENNvpinpetnqksalFYAVNTPEGVRYTKSSSITLNDQNQLT 149
Cdd:PRK05682  66 -----QFSQGSITSTGNSLDLAISGNG-------------FFVVSNGGNGFYTRAGAFKLDKNGYLV 114
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
11-36 6.33e-06

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 44.90  E-value: 6.33e-06
                         10        20
                 ....*....|....*....|....*.
gi 515929435  11 AMIAQERRTEMLSNNIANANTPGYKA 36
Cdd:COG1815   15 ALDLRSLRQEVIASNIANADTPGYKA 40
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
4-34 2.81e-05

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 44.87  E-value: 2.81e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 515929435   4 GLYTATSAMIAQERRTEMLSNNIANANTPGY 34
Cdd:COG1256    5 ALNIALSGLNAAQRALDVTSHNIANANTPGY 35
flgE PRK08425
flagellar hook protein FlgE; Validated
 1-105 3.53e-05

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 45.07  E-value: 3.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADegamRA-FPEMLlsrMESGRFQTS--SGKGFSIPQQTAIG-GI 76
Cdd:PRK08425   1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKYS----RAsFVDML---SQTKLIATApkGGLGGQNDMQIGLGvGV 73

                         90       100
                 ....*....|....*....|....*....
gi 515929435  77 NTGTYMqelipqFTQGTLKTTDQTTDIAL 105
Cdd:PRK08425  74 SSTTKI------FSQGSIQNTDKNTDLAI 96
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 5-36 2.02e-04

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 40.45  E-value: 2.02e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 515929435    5 LYTATSAMIAQERRTEMLSNNIANANTPGYKA 36
Cdd:TIGR01396   5 FGLLQQALDVRSLRQEVIANNIANVDTPGYKA 36
flgE PRK05682
flagellar hook protein FlgE; Validated
 168-273 2.24e-04

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 42.13  E-value: 2.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515929435 168 ENFKVNADGTVS---ENGQN--LGQIDVRVAMDTRNLAREGNDLYR-TADN-QPLPSAVNNGQMSyTLSQGVSELSNVDV 240
Cdd:PRK05682 294 TGYSIDDDGTVTavySNGQTkpLGQIALANFANPDGLTKVGGNVWSaTAASgVALIGTAGSGGFG-TIQSGALESSNVDL 372

                         90       100       110
                 ....*....|....*....|....*....|...
gi 515929435 241 TKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVN 273
Cdd:PRK05682 373 STELVNMIVAQRNYQANAKTIKTQDQLLQTLVN 405
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 2-35 2.84e-04

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 39.79  E-value: 2.84e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 515929435   2 LKGLYTATSAMIAQERRTEMLSNNIANANTPGYK 35
Cdd:PRK12632   5 SKSLSVSASGMRAQALRLRHVSENIANADTPGYR 38
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 4-34 3.33e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 41.92  E-value: 3.33e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 515929435   4 GLYTATSAMIAQERRTEMLSNNIANANTPGY 34
Cdd:PRK07739   7 GLETARRGLFAQQAALYVTGHNIANANTPGY 37
flgB PRK12620
flagellar basal body rod protein FlgB; Provisional
 11-67 7.05e-04

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183628  Cd Length: 132  Bit Score: 38.84  E-value: 7.05e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515929435  11 AMIAQERRTEMLSNNIANANTPGYKAD----EGAMRAFPemllSRMESGRFQTSSGKGFSI 67
Cdd:PRK12620  15 ALTLREQRMKLIASNLSNVDTPGYKAKdlnfEAALKSAQ----GEQDGGLMQTTDAKHYEV 71
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-31 3.36e-03

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 36.73  E-value: 3.36e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 515929435   1 MLKGLYTATSAMIAQERRTEMLSNNIANANT 31
Cdd:PRK05681   3 LFSSFNIAGSGLSAQSQRLNVISSNIANADS 33
flgB PRK12626
flagellar basal body rod protein FlgB; Provisional
 11-36 3.56e-03

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183632  Cd Length: 162  Bit Score: 37.22  E-value: 3.56e-03
                         10        20
                 ....*....|....*....|....*.
gi 515929435  11 AMIAQERRTEMLSNNIANANTPGYKA 36
Cdd:PRK12626  15 ALDVRAYRQELLSSNIANADTPGYRA 40
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 4-34 4.18e-03

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 38.10  E-value: 4.18e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 515929435    4 GLYTATSAMIAQERRTEMLSNNIANANTPGY 34
Cdd:TIGR02492   2 LLNIAKSGLSASQIALSVTSNNIANANTPGY 32
flgB PRK12685
flagellar basal body rod protein FlgB; Reviewed
 18-78 7.12e-03

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 183682  Cd Length: 116  Bit Score: 35.55  E-value: 7.12e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515929435  18 RTEMLSNNIANANTPGYKADEGAMRAfpemLLSRMESG-RFQTSSGKGFSIPQQTAIGGiNT 78
Cdd:PRK12685  22 RSKVLASNLANAETPGYKARDLDFKA----VMSQINAGmVPNQQYEAQYRVPYQNSADG-NT 78
flgB PRK06003
flagellar basal body rod protein FlgB; Reviewed
 18-36 8.70e-03

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 168340  Cd Length: 126  Bit Score: 35.76  E-value: 8.70e-03
                         10
                 ....*....|....*....
gi 515929435  18 RTEMLSNNIANANTPGYKA 36
Cdd:PRK06003  20 RQATVAGNIANANTPGYRA 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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