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Conserved domains on  [gi|515952413|ref|WP_017382996|]
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MULTISPECIES: phage major tail tube protein [Enterobacter]

Protein Classification

phage major tail tube protein( domain architecture ID 10010097)

phage major tail tube protein is a major structural component of the contractile tail

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FII PHA02600
major tail tube protein; Provisional
1-172 3.45e-95

major tail tube protein; Provisional


:

Pssm-ID: 164995  Cd Length: 169  Bit Score: 273.13  E-value: 3.45e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDDdaLSCEWTLGGlPDVELWAQYASPG 80
Cdd:PHA02600   1 MALPRKLKNFNVFNDGASYQGVVEEVTLPKLTRKLEAYRGGGMNGPVKVDMGLED--LELEWTVGG-FEVELLKQYGAVS 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413  81 ADSVPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGV 160
Cdd:PHA02600  78 VDGVPLRFAGSYQRDDTGEVDAVEVVVRGRHKEIDMGTAKAGEDTEFKVTTSLTYYKLTVNGEELIEIDTVNMVEKVNGV 157
                        170
                 ....*....|..
gi 515952413 161 DRLAEHRKAIGL 172
Cdd:PHA02600 158 DLLEAHRRAIGL 169
 
Name Accession Description Interval E-value
FII PHA02600
major tail tube protein; Provisional
1-172 3.45e-95

major tail tube protein; Provisional


Pssm-ID: 164995  Cd Length: 169  Bit Score: 273.13  E-value: 3.45e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDDdaLSCEWTLGGlPDVELWAQYASPG 80
Cdd:PHA02600   1 MALPRKLKNFNVFNDGASYQGVVEEVTLPKLTRKLEAYRGGGMNGPVKVDMGLED--LELEWTVGG-FEVELLKQYGAVS 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413  81 ADSVPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGV 160
Cdd:PHA02600  78 VDGVPLRFAGSYQRDDTGEVDAVEVVVRGRHKEIDMGTAKAGEDTEFKVTTSLTYYKLTVNGEELIEIDTVNMVEKVNGV 157
                        170
                 ....*....|..
gi 515952413 161 DRLAEHRKAIGL 172
Cdd:PHA02600 158 DLLEAHRRAIGL 169
COG3498 COG3498
Phage tail tube protein FII [Mobilome: prophages, transposons];
3-172 3.58e-84

Phage tail tube protein FII [Mobilome: prophages, transposons];


Pssm-ID: 442721  Cd Length: 167  Bit Score: 245.15  E-value: 3.58e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   3 LPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDddALSCEWTLGGLpDVELWAQYASPGAD 82
Cdd:COG3498    1 LPRKLKNFNVYVDGNSYLGVAEEVTLPKLTRKTEEYRGGGMDGPIEVDLGME--KLEAEFTLGGY-DPDVLKLFGLNPGD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413  83 SVPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGVDR 162
Cdd:COG3498   78 AVQLTFRGAYQDDDTGEVVPVEVVMRGRLKEIDPGTWKPGEKTETKVTFSLTYYKLTVDGKELIEIDKLNNIYKVNGVDQ 157
                        170
                 ....*....|
gi 515952413 163 LAEHRKAIGL 172
Cdd:COG3498  158 LADIRAALGL 167
Phage_tube pfam04985
Phage tail tube protein FII; The major structural components of the contractile tail of ...
4-168 3.22e-76

Phage tail tube protein FII; The major structural components of the contractile tail of bacteriophage P2 are proteins FI and FII, which are believed to be the tail sheath and tube proteins, respectively.


Pssm-ID: 428237  Cd Length: 161  Bit Score: 224.75  E-value: 3.22e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413    4 PRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDddALSCEWTLGGLpDVELWAQYASPGaDS 83
Cdd:pfam04985   1 PRKLKNFNVYVDGVSYLGRAEEVTLPKLTRKTEEYRGGGMDGPVEVDMGGE--ALEAEFTLGGL-DADVLKLFGAPG-DA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   84 VPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGVDRL 163
Cdd:pfam04985  77 VQLTFRGSLQRDDTAEVVPVEVVVRGRFKEIDPGTWKPGEKTEFKVTFAVTYYKLTIDGEELIEIDKLNMIYKVNGVDRL 156

                  ....*
gi 515952413  164 AEHRK 168
Cdd:pfam04985 157 AEVRA 161
tail_tube TIGR01611
phage contractile tail tube protein, P2 family; The tails of some phage are contractile. This ...
2-172 2.02e-53

phage contractile tail tube protein, P2 family; The tails of some phage are contractile. This model represents the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from additional phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130672 [Multi-domain]  Cd Length: 168  Bit Score: 167.30  E-value: 2.02e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413    2 ALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDddALSCEWTLGGLPDvELWAQYASPGA 81
Cdd:TIGR01611   1 AEPNRLTNANLFIDGVNLAGRVEEINLPKLAMKTEEYRAGGMVGPVELDMGFE--KLEGEISWNGYRR-EALSAFGPTKS 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   82 DSVPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGVD 161
Cdd:TIGR01611  78 LALNCRFRGRYSSQDLGDEIPLVIFLRGMFKEIDLGTWKAGEKAEFKSAFALTYYKQVVDGEELLELDYVNNIFRVNGVD 157
                         170
                  ....*....|.
gi 515952413  162 RLAEHRKAIGL 172
Cdd:TIGR01611 158 QLADYRNAIGL 168
 
Name Accession Description Interval E-value
FII PHA02600
major tail tube protein; Provisional
1-172 3.45e-95

major tail tube protein; Provisional


Pssm-ID: 164995  Cd Length: 169  Bit Score: 273.13  E-value: 3.45e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDDdaLSCEWTLGGlPDVELWAQYASPG 80
Cdd:PHA02600   1 MALPRKLKNFNVFNDGASYQGVVEEVTLPKLTRKLEAYRGGGMNGPVKVDMGLED--LELEWTVGG-FEVELLKQYGAVS 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413  81 ADSVPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGV 160
Cdd:PHA02600  78 VDGVPLRFAGSYQRDDTGEVDAVEVVVRGRHKEIDMGTAKAGEDTEFKVTTSLTYYKLTVNGEELIEIDTVNMVEKVNGV 157
                        170
                 ....*....|..
gi 515952413 161 DRLAEHRKAIGL 172
Cdd:PHA02600 158 DLLEAHRRAIGL 169
COG3498 COG3498
Phage tail tube protein FII [Mobilome: prophages, transposons];
3-172 3.58e-84

Phage tail tube protein FII [Mobilome: prophages, transposons];


Pssm-ID: 442721  Cd Length: 167  Bit Score: 245.15  E-value: 3.58e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   3 LPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDddALSCEWTLGGLpDVELWAQYASPGAD 82
Cdd:COG3498    1 LPRKLKNFNVYVDGNSYLGVAEEVTLPKLTRKTEEYRGGGMDGPIEVDLGME--KLEAEFTLGGY-DPDVLKLFGLNPGD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413  83 SVPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGVDR 162
Cdd:COG3498   78 AVQLTFRGAYQDDDTGEVVPVEVVMRGRLKEIDPGTWKPGEKTETKVTFSLTYYKLTVDGKELIEIDKLNNIYKVNGVDQ 157
                        170
                 ....*....|
gi 515952413 163 LAEHRKAIGL 172
Cdd:COG3498  158 LADIRAALGL 167
Phage_tube pfam04985
Phage tail tube protein FII; The major structural components of the contractile tail of ...
4-168 3.22e-76

Phage tail tube protein FII; The major structural components of the contractile tail of bacteriophage P2 are proteins FI and FII, which are believed to be the tail sheath and tube proteins, respectively.


Pssm-ID: 428237  Cd Length: 161  Bit Score: 224.75  E-value: 3.22e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413    4 PRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDddALSCEWTLGGLpDVELWAQYASPGaDS 83
Cdd:pfam04985   1 PRKLKNFNVYVDGVSYLGRAEEVTLPKLTRKTEEYRGGGMDGPVEVDMGGE--ALEAEFTLGGL-DADVLKLFGAPG-DA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   84 VPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGVDRL 163
Cdd:pfam04985  77 VQLTFRGSLQRDDTAEVVPVEVVVRGRFKEIDPGTWKPGEKTEFKVTFAVTYYKLTIDGEELIEIDKLNMIYKVNGVDRL 156

                  ....*
gi 515952413  164 AEHRK 168
Cdd:pfam04985 157 AEVRA 161
tail_tube TIGR01611
phage contractile tail tube protein, P2 family; The tails of some phage are contractile. This ...
2-172 2.02e-53

phage contractile tail tube protein, P2 family; The tails of some phage are contractile. This model represents the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from additional phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130672 [Multi-domain]  Cd Length: 168  Bit Score: 167.30  E-value: 2.02e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413    2 ALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLEKYRGGGMPGSVSIDLGLDddALSCEWTLGGLPDvELWAQYASPGA 81
Cdd:TIGR01611   1 AEPNRLTNANLFIDGVNLAGRVEEINLPKLAMKTEEYRAGGMVGPVELDMGFE--KLEGEISWNGYRR-EALSAFGPTKS 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515952413   82 DSVPLRFTGSYQRDDTGAISAVEVVMRGRHKEYDGGENKQGESGTTKISTECAYYQLTIDGKEVIEIDVINMVLKVDGVD 161
Cdd:TIGR01611  78 LALNCRFRGRYSSQDLGDEIPLVIFLRGMFKEIDLGTWKAGEKAEFKSAFALTYYKQVVDGEELLELDYVNNIFRVNGVD 157
                         170
                  ....*....|.
gi 515952413  162 RLAEHRKAIGL 172
Cdd:TIGR01611 158 QLADYRNAIGL 168
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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