|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-462 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 712.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 6 WQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDaPQLRFEVGTKPVT 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTVGEDEEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 85 QTVREVVNVAApaqaapapaprvapvrqgwdNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNP 164
Cdd:TIGR00362 80 LEPNSKKPEPA--------------------PPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNP 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 165 LFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQ 244
Cdd:TIGR00362 140 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQ 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 245 EEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAK 324
Cdd:TIGR00362 220 EEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAK 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 325 RLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 404
Cdd:TIGR00362 300 NITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPR 379
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 515953117 405 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 462
Cdd:TIGR00362 380 QIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-464 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 708.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNdfcgsdapqlrfevg 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 80 tkpvtqtvrevvnvaapaqaapapaprvapvrqgwdnvpapaeptyrsnVNVKHTFDNFVEGKSNQLARAAARQVADNPG 159
Cdd:PRK00149 66 -------------------------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPG 96
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 160 GAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 239
Cdd:PRK00149 97 KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 240 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVA 319
Cdd:PRK00149 177 KERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVL 256
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 320 FFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRS 399
Cdd:PRK00149 257 EFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRN 336
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515953117 400 VARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 464
Cdd:PRK00149 337 IARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
130-431 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 550.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 130 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 209
Cdd:COG0593 2 NPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFIN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 210 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 289
Cdd:COG0593 82 AIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 290 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 369
Cdd:COG0593 162 DIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKK 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515953117 370 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDH 431
Cdd:COG0593 242 EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
130-347 |
5.81e-128 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 369.73 E-value: 5.81e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 130 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 209
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 210 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 289
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 515953117 290 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 347
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
373-462 |
1.45e-43 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 148.05 E-value: 1.45e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 373 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIK 452
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 515953117 453 EDFSNLIRTL 462
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
372-440 |
1.10e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 131.86 E-value: 1.10e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515953117 372 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 440
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-462 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 712.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 6 WQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDaPQLRFEVGTKPVT 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTVGEDEEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 85 QTVREVVNVAApaqaapapaprvapvrqgwdNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNP 164
Cdd:TIGR00362 80 LEPNSKKPEPA--------------------PPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNP 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 165 LFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQ 244
Cdd:TIGR00362 140 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQ 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 245 EEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAK 324
Cdd:TIGR00362 220 EEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAK 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 325 RLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 404
Cdd:TIGR00362 300 NITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPR 379
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 515953117 405 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 462
Cdd:TIGR00362 380 QIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-464 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 708.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNdfcgsdapqlrfevg 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 80 tkpvtqtvrevvnvaapaqaapapaprvapvrqgwdnvpapaeptyrsnVNVKHTFDNFVEGKSNQLARAAARQVADNPG 159
Cdd:PRK00149 66 -------------------------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPG 96
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 160 GAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 239
Cdd:PRK00149 97 KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 240 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVA 319
Cdd:PRK00149 177 KERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVL 256
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 320 FFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRS 399
Cdd:PRK00149 257 EFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRN 336
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515953117 400 VARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 464
Cdd:PRK00149 337 IARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
130-431 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 550.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 130 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 209
Cdd:COG0593 2 NPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFIN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 210 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 289
Cdd:COG0593 82 AIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 290 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 369
Cdd:COG0593 162 DIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKK 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515953117 370 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDH 431
Cdd:COG0593 242 EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
130-347 |
5.81e-128 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 369.73 E-value: 5.81e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 130 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 209
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 210 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 289
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 515953117 290 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 347
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
117-451 |
1.88e-122 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 369.92 E-value: 1.88e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 117 VPAPAEPTYRsnVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVV 196
Cdd:PRK14086 271 APGPGEPTAR--LNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVR 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 197 YMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVE 276
Cdd:PRK14086 349 YVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 277 DRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFV 356
Cdd:PRK14086 429 DRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLT 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 357 REALRDLLALQEKL-VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFgGRDHTTVL 435
Cdd:PRK14086 509 EIVLRDLIPEDSAPeITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVM 587
|
330
....*....|....*.
gi 515953117 436 HACRKIEQLREESHDI 451
Cdd:PRK14086 588 HADRKIRALMAERRSI 603
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
119-464 |
4.07e-75 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 242.43 E-value: 4.07e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 119 APAEPTYrSNVNVKHTFDNFVEGKSNQLARAAARQVA----DNPGGAYNPLFLYGGTGLGKTHLLHAVGNGImaRKPNAK 194
Cdd:PRK12422 95 AYFTMKY-GELDPLMTFANFLVTPENDLPHRILQEFTkvseQGKGFPFNPIYLFGPEGSGKTHLMQAAVHAL--RESGGK 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 195 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL-LEGnQQIILTSDRYPKEIN 273
Cdd:PRK12422 172 ILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLhTEG-KLIVISSTCAPQDLK 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 274 GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV---IANANFTGRA 350
Cdd:PRK12422 251 AMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLakrVAYKKLSHQL 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 351 ITIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFgGR 429
Cdd:PRK12422 331 LYVDDIKALLHDVLEAAESVrLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SR 409
|
330 340 350
....*....|....*....|....*....|....*.
gi 515953117 430 DHTTVLHACRKIEQ-LREESHDIKEDFSNLIRTLSS 464
Cdd:PRK12422 410 DHSTVISSIRAISQkLEEDDRDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
373-462 |
1.45e-43 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 148.05 E-value: 1.45e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 373 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIK 452
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 515953117 453 EDFSNLIRTL 462
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
373-441 |
2.19e-40 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 139.07 E-value: 2.19e-40
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515953117 373 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 441
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
372-440 |
1.10e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 131.86 E-value: 1.10e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515953117 372 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 440
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
134-361 |
4.46e-33 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 124.61 E-value: 4.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 134 TFDNFVEGkSNQLARAAARQVADNPGGayNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAkvVYMHSERFVQDMVKALqn 213
Cdd:TIGR03420 13 TFDNFYAG-GNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAAAEERGKSA--IYLPLAELAQADPEVL-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 214 NAIEEFkryyrsvDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 293
Cdd:TIGR03420 86 EGLEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515953117 294 PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 361
Cdd:TIGR03420 159 LSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
134-361 |
5.43e-19 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 85.89 E-value: 5.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 134 TFDNFVEGKSNQLArAAARQVADNPGGAYnpLFLYGGTGLGKTHLLHAVGNGIMARkpNAKVVYMHSER---FVQDMVKA 210
Cdd:PRK08084 20 TFASFYPGDNDSLL-AALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKrawFVPEVLEG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 211 LQnnaieefkryyrSVDALLIDDIQFFANKERSQEEFFHTFNALLE-GNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 289
Cdd:PRK08084 95 ME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILEsGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515953117 290 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 361
Cdd:PRK08084 163 KLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
144-287 |
6.73e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 83.35 E-value: 6.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 144 NQLARAAARQVADNPggAYNPLFLYGGTGLGKTHLLHAVGNGImaRKPNAKVVYMHSERFVQDMVKALQ----NNAIEEF 219
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELfghfLVRLLFE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515953117 220 KRYYRSVDALLIDDIQFFANKERSQ-EEFFHTFNALLE--GNQQIILTSDR--YPKEINGVEDRLKSRFGWGL 287
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNAlLRVLETLNDLRIdrENVRVIGATNRplLGDLDRALYDRLDIRIVIPL 151
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
4-65 |
2.15e-18 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 78.86 E-value: 2.15e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515953117 4 SLWQQCLARLQDELPATEFSMWIRPLQAELSDNT--LALYAPNRFVLDWVRDKYLNNINGLLND 65
Cdd:pfam11638 2 ELWERVLERLRKEVGEQTFNTWIKPLTLVDLDDGgsLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
134-360 |
6.35e-15 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 73.86 E-value: 6.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 134 TFDNFVEGKSNQLARAAARQVADNPGGAYnpLFLYGGTGLGKTHLLHAVGNGIMARKPNAkvVYmhserfvqdmvkaLQN 213
Cdd:PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRF--FYLWGEAGSGRSHLLQALVADASYGGRNA--RY-------------LDA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 214 NAIEEFKRYYRSVDALLIDDIQFFANKErsQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 293
Cdd:PRK08903 79 ASPLLAFDFDPEAELYAVDDVERLDDAQ--QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515953117 294 PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREAL 360
Cdd:PRK08903 157 LSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREML 223
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
380-447 |
1.06e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 61.72 E-value: 1.06e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515953117 380 VAEYYKIKVADLLS-KRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGgRDHTTVLHACRKIEQLREE 447
Cdd:PRK06030 32 LALAFGVSGAEIASpLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLRDD 99
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
134-265 |
3.48e-11 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 63.26 E-value: 3.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 134 TFDNFVEGKSNQLARAAARQVADnpgGAY----NPLFLYGGTGLGKTHLLHAVGN-GIMARKpnaKVVYMHSERFVQDMV 208
Cdd:COG1484 70 TLEDFDFDAQPGLDRRQILELAT---LDFiergENLILLGPPGTGKTHLAIALGHeACRAGY---RVRFTTAPDLVNELK 143
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 515953117 209 KALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEgNQQIILTS 265
Cdd:COG1484 144 EARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYE-RRSTIITS 199
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
163-283 |
1.25e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 163 NPLFLYGGTGLGKTHLLHAVGNgiMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRY---------------YRSVD 227
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515953117 228 ALLIDDIQFFANKERSQEEFFHTFNALL-----EGNQQIILTSDRYPKEIngvEDRLKSRF 283
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLlllksEKNLTVILTTNDEKDLG---PALLRRRF 138
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
165-283 |
2.89e-07 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 52.21 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 165 LFLYGGTGLGKTHLLHAVGNGIMARKpnAKVVYMHSERFVQDMVKA-LQNNAIEEFKR-YYRSVDALLIDDIQFFANKER 242
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADELIEILREIrFNNDKELEEVYdLLINCDLLIIDDLGTEKITEF 263
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 515953117 243 SQEEFFHTFNA-LLEGNQQIILT-------SDRYPKEINGvedRLKSRF 283
Cdd:PRK06835 264 SKSELFNLINKrLLRQKKMIISTnlsleelLKTYSERISS---RLLGNF 309
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
165-234 |
1.69e-06 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 49.48 E-value: 1.69e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 165 LFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSerFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 234
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
132-291 |
7.54e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 47.47 E-value: 7.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 132 KHTFDNFV-EGKSNQLARA---AARQVADNP---GGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFV 204
Cdd:PRK06921 80 KLTFKNFKtEGKPQAIKDAyecAVEYVKDFEkiqESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 205 QdmvkaLQNN--AIEEFKRYYRSVDALLIDDIQFFANKERSQEEF-----FHTFNALLEGNQQIILTSDRYPKEINGVED 277
Cdd:PRK06921 160 D-----LKDDfdLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWqieqmYSVLNYRYLNHKPILISSELTIDELLDIDE 234
|
170
....*....|....*..
gi 515953117 278 RLKSRF---GWGLTVAI 291
Cdd:PRK06921 235 ALGSRIvemCKDYLVII 251
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
124-360 |
2.01e-05 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 45.60 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 124 TYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGgaYNP----LFLYGGTGLGKTHLlhavgNGIMARKPNAkvvYMH 199
Cdd:PRK06620 4 IFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFG--VNPykftLLIKGPSSSGKTYL-----TKIWQNLSNA---YII 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 200 SERFVqdmvkalqnnaIEEFkryYRSVDALLIDDIQFFANKErsqeeFFHTFNALLEGNQQIILTSDRYPKeiNGVEDRL 279
Cdd:PRK06620 74 KDIFF-----------NEEI---LEKYNAFIIEDIENWQEPA-----LLHIFNIINEKQKYLLLTSSDKSR--NFTLPDL 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 280 KSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREA 359
Cdd:PRK06620 133 SSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEV 212
|
.
gi 515953117 360 L 360
Cdd:PRK06620 213 L 213
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
134-282 |
2.34e-05 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 45.78 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 134 TFDNF-VEGKSNQLARAAARQV-------ADNPGgaynpLFLYGGTGLGKTHLLHAVGNGIMARKpnAKVVYMHSERFVQ 205
Cdd:PRK08116 83 TFENFlFDKGSEKAYKIARKYVkkfeemkKENVG-----LLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQLLN 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 206 DMVKALQNNAIEEFKRYYRSV---DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEI-NGVEDRLKS 281
Cdd:PRK08116 156 RIKSTYKSSGKEDENEIIRSLvnaDLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELkNQYGKRIYD 235
|
.
gi 515953117 282 R 282
Cdd:PRK08116 236 R 236
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
132-234 |
5.17e-05 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 44.83 E-value: 5.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 132 KHTFDNF-VEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYmhserfVQDMVKA 210
Cdd:PRK12377 70 KCSFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT------VPDVMSR 143
|
90 100
....*....|....*....|....*....
gi 515953117 211 LQN-----NAIEEFKRYYRSVDALLIDDI 234
Cdd:PRK12377 144 LHEsydngQSGEKFLQELCKVDLLVLDEI 172
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
2-78 |
9.99e-04 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 41.29 E-value: 9.99e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515953117 2 SLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGsDAPQLRFEV 78
Cdd:PRK06672 191 SKTIWNKIKDKMQLKISRPSYETWVKETTARINEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTG-NTYEIQFEL 266
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
134-234 |
1.07e-03 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 40.52 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 134 TFDNF-VEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYmhserfVQDMVKALQ 212
Cdd:PRK07952 70 SFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT------VADIMSAMK 143
|
90 100
....*....|....*....|....*...
gi 515953117 213 ------NNAIEEFKRYYRSVDALLIDDI 234
Cdd:PRK07952 144 dtfsnsETSEEQLLNDLSNVDLLVIDEI 171
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
3-85 |
8.03e-03 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 38.20 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515953117 3 LSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDApQLRFEVGTKP 82
Cdd:PRK06672 92 LSSWDEVKKALRPKIAEKTFMTWIRNTNATIKDNKVIIFCEDAFHRDLLEGEYKNIISSTVQKITDEEY-QIWFEIGSSA 170
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...
gi 515953117 83 VTQ 85
Cdd:PRK06672 171 TSK 173
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