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Conserved domains on  [gi|515954049|ref|WP_017384632|]
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MULTISPECIES: regulatory protein YcgZ [Enterobacter]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YcgZ_fam NF040640
regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown ...
1-77 7.22e-48

regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown function that appears to participate in regulatory cascades involved in processes such as biofilm formation and response to blue light. YcgZ is homologous to YmgB/AriR, a paralog also found in E. coli and described as having a role in regulatory cascades.


:

Pssm-ID: 468608  Cd Length: 77  Bit Score: 145.83  E-value: 7.22e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515954049  1 MQQNGHLADSATAIAQYFEKAALPTQQETLGQVVVEILSDGRNLNRKSLCTKLLSRLEKANGPEEEHHYHMLLGLLF 77
Cdd:NF040640  1 MRQNGYNPDSASDIARYFSKASLPSQQETLGQIVVEILRAGKNLNRKAICSKLLRRLELASSPEEERHYQELIGLLF 77
 
Name Accession Description Interval E-value
YcgZ_fam NF040640
regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown ...
1-77 7.22e-48

regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown function that appears to participate in regulatory cascades involved in processes such as biofilm formation and response to blue light. YcgZ is homologous to YmgB/AriR, a paralog also found in E. coli and described as having a role in regulatory cascades.


Pssm-ID: 468608  Cd Length: 77  Bit Score: 145.83  E-value: 7.22e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515954049  1 MQQNGHLADSATAIAQYFEKAALPTQQETLGQVVVEILSDGRNLNRKSLCTKLLSRLEKANGPEEEHHYHMLLGLLF 77
Cdd:NF040640  1 MRQNGYNPDSASDIARYFSKASLPSQQETLGQIVVEILRAGKNLNRKAICSKLLRRLELASSPEEERHYQELIGLLF 77
 
Name Accession Description Interval E-value
YcgZ_fam NF040640
regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown ...
1-77 7.22e-48

regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown function that appears to participate in regulatory cascades involved in processes such as biofilm formation and response to blue light. YcgZ is homologous to YmgB/AriR, a paralog also found in E. coli and described as having a role in regulatory cascades.


Pssm-ID: 468608  Cd Length: 77  Bit Score: 145.83  E-value: 7.22e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515954049  1 MQQNGHLADSATAIAQYFEKAALPTQQETLGQVVVEILSDGRNLNRKSLCTKLLSRLEKANGPEEEHHYHMLLGLLF 77
Cdd:NF040640  1 MRQNGYNPDSASDIARYFSKASLPSQQETLGQIVVEILRAGKNLNRKAICSKLLRRLELASSPEEERHYQELIGLLF 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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