|
Name |
Accession |
Description |
Interval |
E-value |
| propeller_TolB |
TIGR02800 |
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB ... |
13-427 |
0e+00 |
|
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274305 [Multi-domain] Cd Length: 417 Bit Score: 532.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 13 VLLTSAVHATVSIDITDWNDSARPIGVVPFQWAGPGAAP----EDIGGIVAADLRNSGKFNPLDRSRLPQQPGTAQEVQP 88
Cdd:TIGR02800 1 LAVSTPAAADLTIEITKGGASALPIAVAPFSNDGGGSPDanlgESIAEVIANDLKRSGLFSPVDKAGLPSNPIAESQVNP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 89 AAWSALGIDAVVVGQVTPAPDGGYNVAYQLVDTGGApGTVLAQNTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIA 168
Cdd:TIGR02800 81 AAWQALGADALVVGSVTPNGNGRYTVRFRLYDVVSG-QLQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 169 YVVQtNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLSNGAVRQVASFPRHNGA 248
Cdd:TIGR02800 160 YVSK-SGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 249 PAFSPDGTKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRIT 328
Cdd:TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 329 WEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 408
Cdd:TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398
|
410
....*....|....*....
gi 515954379 409 RFKARLPATDGQVKSPAWS 427
Cdd:TIGR02800 399 RFRARLPLGNGDVREPAWS 417
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
258-416 |
1.39e-46 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 157.53 E-value: 1.39e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 258 LAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRITWEGSQNQDA 337
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515954379 338 DVSADGKTMVMVSTAGGQQHIAKQDLVTGGVQVLSSTFLDetPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRfKARLPA 416
Cdd:COG0823 81 SWSPDGKRLAFVSRSDGRFDIYVLDLDGGAPRRLTDGPGS--PSWSPDGRRIVFSSDRGGRPDLYVVDLDGR-KRRLTP 156
|
|
| TolB_N |
pfam04052 |
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent ... |
23-121 |
1.31e-38 |
|
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain.
Pssm-ID: 461148 Cd Length: 105 Bit Score: 135.05 E-value: 1.31e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 23 VSIDITDWNDSARPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQQPGTAQEVQPAAWSALGIDAVVVG 102
Cdd:pfam04052 1 LRIEITGGGDTALPIAVVPFQGEGGADLPQDISEVIAADLERSGLFRPIDPAAFPQRPTSDSEVDFADWRALGADALVTG 80
|
90
....*....|....*....
gi 515954379 103 QVTPAPDGGYNVAYQLVDT 121
Cdd:pfam04052 81 SVTRGGDGRYKVEFRLYDV 99
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
146-426 |
6.77e-25 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 106.00 E-value: 6.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 146 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPY---ELRVSDYDGYN--QFTVHRSPQplMSPAWSPDGSKLA--YVT 218
Cdd:PRK01029 128 HEAADTIHYALTGVPGISSGKIIFSLSTTNSDTELkqgELWSVDYDGQNlrPLTQEHSLS--ITPTWMHIGSGFPylYVS 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 219 FESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDI-----GSGQIRQVTDGR-SNNTE 292
Cdd:PRK01029 206 YKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFsletgAIGKPRRLLNEAfGTQGN 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 293 PTWFPDSQNLAFTSDQAGRPQVYKVNIN--GGAAQRITWEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTGGVQV 370
Cdd:PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDpeGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 515954379 371 LSSTFLD-ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAW 426
Cdd:PRK01029 366 LTTSPENkESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSW 422
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| propeller_TolB |
TIGR02800 |
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB ... |
13-427 |
0e+00 |
|
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274305 [Multi-domain] Cd Length: 417 Bit Score: 532.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 13 VLLTSAVHATVSIDITDWNDSARPIGVVPFQWAGPGAAP----EDIGGIVAADLRNSGKFNPLDRSRLPQQPGTAQEVQP 88
Cdd:TIGR02800 1 LAVSTPAAADLTIEITKGGASALPIAVAPFSNDGGGSPDanlgESIAEVIANDLKRSGLFSPVDKAGLPSNPIAESQVNP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 89 AAWSALGIDAVVVGQVTPAPDGGYNVAYQLVDTGGApGTVLAQNTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIA 168
Cdd:TIGR02800 81 AAWQALGADALVVGSVTPNGNGRYTVRFRLYDVVSG-QLQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 169 YVVQtNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLSNGAVRQVASFPRHNGA 248
Cdd:TIGR02800 160 YVSK-SGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 249 PAFSPDGTKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRIT 328
Cdd:TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 329 WEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 408
Cdd:TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398
|
410
....*....|....*....
gi 515954379 409 RFKARLPATDGQVKSPAWS 427
Cdd:TIGR02800 399 RFRARLPLGNGDVREPAWS 417
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
258-416 |
1.39e-46 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 157.53 E-value: 1.39e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 258 LAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRITWEGSQNQDA 337
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515954379 338 DVSADGKTMVMVSTAGGQQHIAKQDLVTGGVQVLSSTFLDetPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRfKARLPA 416
Cdd:COG0823 81 SWSPDGKRLAFVSRSDGRFDIYVLDLDGGAPRRLTDGPGS--PSWSPDGRRIVFSSDRGGRPDLYVVDLDGR-KRRLTP 156
|
|
| TolB_N |
pfam04052 |
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent ... |
23-121 |
1.31e-38 |
|
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain.
Pssm-ID: 461148 Cd Length: 105 Bit Score: 135.05 E-value: 1.31e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 23 VSIDITDWNDSARPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQQPGTAQEVQPAAWSALGIDAVVVG 102
Cdd:pfam04052 1 LRIEITGGGDTALPIAVVPFQGEGGADLPQDISEVIAADLERSGLFRPIDPAAFPQRPTSDSEVDFADWRALGADALVTG 80
|
90
....*....|....*....
gi 515954379 103 QVTPAPDGGYNVAYQLVDT 121
Cdd:pfam04052 81 SVTRGGDGRYKVEFRLYDV 99
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
167-325 |
1.24e-35 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 129.02 E-value: 1.24e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 167 IAYVVQTNGGqfpYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLSNGAVRQVASFPRHN 246
Cdd:COG0823 1 LAFTLSRDGN---SDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYN 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515954379 247 GAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNntePTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQ 325
Cdd:COG0823 78 ASPSWSPDGKRLAFVSRSDGRFDIYVLDLDGGAPRRLTDGPGS---PSWSPDGRRIVFSSDRGGRPDLYVVDLDGRKRR 153
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
146-426 |
6.77e-25 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 106.00 E-value: 6.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 146 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPY---ELRVSDYDGYN--QFTVHRSPQplMSPAWSPDGSKLA--YVT 218
Cdd:PRK01029 128 HEAADTIHYALTGVPGISSGKIIFSLSTTNSDTELkqgELWSVDYDGQNlrPLTQEHSLS--ITPTWMHIGSGFPylYVS 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 219 FESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDI-----GSGQIRQVTDGR-SNNTE 292
Cdd:PRK01029 206 YKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFsletgAIGKPRRLLNEAfGTQGN 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 293 PTWFPDSQNLAFTSDQAGRPQVYKVNIN--GGAAQRITWEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTGGVQV 370
Cdd:PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDpeGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 515954379 371 LSSTFLD-ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAW 426
Cdd:PRK01029 366 LTTSPENkESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSW 422
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
204-350 |
3.46e-22 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 99.73 E-value: 3.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 204 SPAWSPDGSKLAYVTFESGRSALVIQTLSN-GAVRQVASF-PRHNGAPAFSPDGTKLAFAlskTGSLNLYVMDIGSGQIR 281
Cdd:COG4946 347 LPAWSPDGKSIAYFSDASGEYELYIAPADGsGEPKQLTLGdLGRVFNPVWSPDGKKIAFT---DNRGRLWVVDLASGKVR 423
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515954379 282 QVTDGRSN--NTEPTWFPDSQNLAFT-SDQAGRPQVYKVNINGGAAQRITWEGSQNQDADVSADGKTMVMVS 350
Cdd:COG4946 424 KVDTDGYGdgISDLAWSPDSKWLAYSkPGPNQLSQIFLYDVETGKTVQLTDGRYDDGSPAFSPDGKYLYFLS 495
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
204-335 |
2.43e-19 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 89.44 E-value: 2.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 204 SPAWSPDGSKLAYVTFESGRSALVIQTLS--NGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQIR 281
Cdd:PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDpeGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515954379 282 QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRIT----------WEGSQNQ 335
Cdd:PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVigsgekrfpsWGAFPSQ 428
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
184-313 |
4.80e-18 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 87.02 E-value: 4.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 184 VSDYDGYNQFTVHRS-----PQPL--------MSPAWSPDGSKLAYVtfeSGRSALVIQTLSNGAVRQVAS--FPRHNGA 248
Cdd:COG4946 360 FSDASGEYELYIAPAdgsgePKQLtlgdlgrvFNPVWSPDGKKIAFT---DNRGRLWVVDLASGKVRKVDTdgYGDGISD 436
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515954379 249 PAFSPDGTKLAFALSKTGSL-NLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 313
Cdd:COG4946 437 LAWSPDSKWLAYSKPGPNQLsQIFLYDVETGKTVQLTDGRYDDGSPAFSPDGKYLYFLSSRDFNPT 502
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
203-428 |
2.30e-15 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 78.54 E-value: 2.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 203 MSPAWSPDGSKLAYV----------------------TFESGRSALVIQTLSNGAV----RQVASFPRHN---------- 246
Cdd:COG4946 64 SFPRFSPDGKWIAFTsdydgntdvyvmpaeggepkrlTYHPANDRVVGWTPDGKSVlfasNRGSPPSRSNqlytvpvdgg 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 247 ----------GAPAFSPDGTKLAFAlSKTGSLN------------LYVMDIGSGQIRQVTDGRSNNTEPTWFPDsqNLAF 304
Cdd:COG4946 144 lperlplppaGDGSFSPDGKKLAYT-RIGREFRtwkryrggtagdIWIYDLGTGEFTRLTDFGGNDRNPMWIGD--RIYF 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 305 TSDQAGRPQVYKVNINGGAAQRITwegsQNQDADV---SADGKTMVMvsTAGGQQHiaKQDLVTGGVQVLS----STFLD 377
Cdd:COG4946 221 LSDRDGTFNLYSYDPDGKDLRQLT----HFKDFDVrfpSTDGGRIVY--EQGGDLY--LLDLASGEPRKLNitlaGDFPQ 292
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 378 ETP------------SLAPNGTMV-------IYSSSQGMGSVLNLVSTDGrfkarlpatdGQVKSPAWSP 428
Cdd:COG4946 293 RRPrwvdvsgyltsfALSPDGKRVafeargeVFTVPAEKGPTRNLTNTPG----------VRERLPAWSP 352
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
269-392 |
7.04e-11 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 64.29 E-value: 7.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 269 NLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRITWEGSQNQDADVSADGKTmVM 348
Cdd:COG4946 42 DLWTVPADGGRARRLTSHPGYESFPRFSPDGKWIAFTSDYDGNTDVYVMPAEGGEPKRLTYHPANDRVVGWTPDGKS-VL 120
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 515954379 349 VSTAGGQQHIAKQDL----VTGG-VQVLS---STFLdetpSLAPNGTMVIYS 392
Cdd:COG4946 121 FASNRGSPPSRSNQLytvpVDGGlPERLPlppAGDG----SFSPDGKKLAYT 168
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
199-428 |
1.04e-10 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 63.90 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 199 PQPLMSP-----AWSPDGSKLAYVTFESGRSA-----------LVIQTLSNGAVRQVASFPRHNGAPAFSPDgtKLAFAL 262
Cdd:COG4946 145 PERLPLPpagdgSFSPDGKKLAYTRIGREFRTwkryrggtagdIWIYDLGTGEFTRLTDFGGNDRNPMWIGD--RIYFLS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 263 SKTGSLNLYVMDIGSGQIRQVT----------------------------DGRSNNTE--------------PTWF---- 296
Cdd:COG4946 223 DRDGTFNLYSYDPDGKDLRQLThfkdfdvrfpstdggrivyeqggdlyllDLASGEPRklnitlagdfpqrrPRWVdvsg 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 297 --------PDSQNLAFTSdqagRPQVYKVNINGGAAQRITWE-GSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTGG 367
Cdd:COG4946 303 yltsfalsPDGKRVAFEA----RGEVFTVPAEKGPTRNLTNTpGVRERLPAWSPDGKSIAYFSDASGEYELYIAPADGSG 378
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515954379 368 --VQVLSSTFLDET-PSLAPNGTMVIYSSSQGmgsVLNLVSTDGRfKARLPATDGQ---VKSPAWSP 428
Cdd:COG4946 379 epKQLTLGDLGRVFnPVWSPDGKKIAFTDNRG---RLWVVDLASG-KVRKVDTDGYgdgISDLAWSP 441
|
|
| tolB |
PRK04043 |
Tol-Pal system protein TolB; |
252-350 |
1.86e-09 |
|
Tol-Pal system protein TolB;
Pssm-ID: 235212 [Multi-domain] Cd Length: 419 Bit Score: 59.24 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 252 SPDGTKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRITWEG 331
Cdd:PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320
|
90
....*....|....*....
gi 515954379 332 sQNQDAdVSADGKTMVMVS 350
Cdd:PRK04043 321 -KNNSS-VSTYKNYIVYSS 337
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
280-316 |
1.92e-08 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 49.82 E-value: 1.92e-08
10 20 30
....*....|....*....|....*....|....*..
gi 515954379 280 IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 316
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIYV 37
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
206-428 |
9.76e-08 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 53.76 E-value: 9.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 206 AWSPDGSKLAYVtfeSGRSALVIQTLSNGavRQVASFPRHNGAP---AFSPDGTKLAFAlSKTGSLNLYvmDIGSGQIRQ 282
Cdd:COG2319 169 AFSPDGKLLASG---SDDGTVRLWDLATG--KLLRTLTGHTGAVrsvAFSPDGKLLASG-SADGTVRLW--DLATGKLLR 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 283 VTDGRSNN-TEPTWFPDSQNLAfTSDQAGRPQVYKVNiNGGAAQRITWEGSQNQDADVSADGKTMVmvstAGGQQHIAKQ 361
Cdd:COG2319 241 TLTGHSGSvRSVAFSPDGRLLA-SGSADGTVRLWDLA-TGELLRTLTGHSGGVNSVAFSPDGKLLA----SGSDDGTVRL 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 362 -DLVTGGVQVLSSTFLDETPSLA--PNGTMVIYSSSQGMGSVLNLvsTDGRFKARLPATDGQVKSPAWSP 428
Cdd:COG2319 315 wDLATGKLLRTLTGHTGAVRSVAfsPDGKTLASGSDDGTVRLWDL--ATGELLRTLTGHTGAVTSVAFSP 382
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
236-272 |
1.41e-07 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 47.51 E-value: 1.41e-07
10 20 30
....*....|....*....|....*....|....*..
gi 515954379 236 VRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYV 272
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIYV 37
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
182-428 |
8.43e-07 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 50.68 E-value: 8.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 182 LRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVtfeSGRSALVIQTLSNGavRQVASFPRHNGAP---AFSPDGTKL 258
Cdd:COG2319 61 LLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASA---SADGTVRLWDLATG--LLLRTLTGHTGAVrsvAFSPDGKTL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 259 AFAlSKTGSLNLYvmDIGSGQIRQVTDGRSNNTEP-TWFPDSQNLAFTSDQAgrpQVYKVNINGGAAQRiTWEGSQN--Q 335
Cdd:COG2319 136 ASG-SADGTVRLW--DLATGKLLRTLTGHSGAVTSvAFSPDGKLLASGSDDG---TVRLWDLATGKLLR-TLTGHTGavR 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 336 DADVSADGKTMVmvstAGGQQHIAKQ-DLVTGGVQVLSSTFLDETPSLA--PNGTMVIYSSSQGMGSVLNLvsTDGRFKA 412
Cdd:COG2319 209 SVAFSPDGKLLA----SGSADGTVRLwDLATGKLLRTLTGHSGSVRSVAfsPDGRLLASGSADGTVRLWDL--ATGELLR 282
|
250
....*....|....*.
gi 515954379 413 RLPATDGQVKSPAWSP 428
Cdd:COG2319 283 TLTGHSGGVNSVAFSP 298
|
|
| Pectate_lyase22 |
pfam14583 |
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more ... |
188-315 |
3.73e-05 |
|
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
Pssm-ID: 434052 [Multi-domain] Cd Length: 386 Bit Score: 45.78 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 188 DGYNQFTV--HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI-----QTLSNgavRQVASFP-------RHNGAPAFSp 253
Cdd:pfam14583 224 DGSNMRKVktHAEGESCTHEFWVPDGSALVYVSYLKGSTDRFIysadpVTLEN---RQLTSMPacshlmsNYDGTLMVG- 299
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515954379 254 DGTKLAFALSKTGSLN------LYVMDIGSGQIRQVT-----------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 315
Cdd:pfam14583 300 DGSDAPVDVQDDSGYKiendpfLYVFNMKNGTQHRVArhdtswevfegDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378
|
|
| Peptidase_S9_N |
pfam02897 |
Prolyl oligopeptidase, N-terminal beta-propeller domain; This unusual 7-stranded ... |
247-350 |
7.74e-05 |
|
Prolyl oligopeptidase, N-terminal beta-propeller domain; This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol.
Pssm-ID: 397164 [Multi-domain] Cd Length: 414 Bit Score: 44.61 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 247 GAPAFSPDGTKLAFALSKTGS--LNLYVMDIGSGQirQVTDG--RSNNTEPTWFPDSQNLAFTS--DQAGRP-------- 312
Cdd:pfam02897 127 GGFAFSPDGRLLAYSLSLSGSdwYTIRFRDVETGE--DLPDVleGVKFSGIVWAPDGKGFFYTRydKPDERSdtgtnlnq 204
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 515954379 313 QVYKVNINGGAAQ-RITWEGSQNQD----ADVSADGKTMVMVS 350
Cdd:pfam02897 205 KVWRHRLGTPQSQdVLVFEFPKDPLwslgAERSEDGKYLFISS 247
|
|
| DPPIV_N |
pfam00930 |
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ... |
194-411 |
3.15e-04 |
|
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.
Pssm-ID: 395744 [Multi-domain] Cd Length: 352 Bit Score: 42.69 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 194 TVHRSPQPLMSPAWSPDGSKLAYVtFESGrsaLVIQTLSNGAVRQV---ASFPRHNGAP---------------AFSPDG 255
Cdd:pfam00930 37 PLPPGEGKIQDAKWSPDGDRLAFV-RDNN---LYVRELATGKEIQItsdGSDGIFNGVAdwvyeeevlgsnsavWWSPDG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 256 TKLAFA----------------------------LSKTGSLN----LYVMDIGSGQIRQVTDGRSNNTEP------TWFP 297
Cdd:pfam00930 113 SRLAFLrfdesevpiitlpyytdegpgpevreikYPKAGAPNptveLFVYDLASGKTVEVVPPDDLSDADyyitrvKWVP 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 298 DSqNLAFTsdQAGRPQ----VYKVNINGGAAQRI------TWEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTGG 367
Cdd:pfam00930 193 DG-KLLVQ--WLNRDQnrlkVVLCDAETGRTVVIleetsdGWVELHQDPHFIKRDGSGFLWISERDGYNHLYLYDLDGKS 269
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 515954379 368 VQVLSSTFLDETPSLAPNGTM--VIYSSSQGMGSVLNL--VSTDGRFK 411
Cdd:pfam00930 270 PIQLTSGNWEVTSILGVDETRdlVYFTATEDSPTERHLysVSLDSGGE 317
|
|
| DPPIV_N |
pfam00930 |
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ... |
252-332 |
3.86e-04 |
|
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.
Pssm-ID: 395744 [Multi-domain] Cd Length: 352 Bit Score: 42.30 E-value: 3.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 252 SPDGTKLAFALSKT------GSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQagrpQVYKVNINGGAAQ 325
Cdd:pfam00930 1 SPDGKYLLLATNYTknwrhsYTADYYIYDLETNRVEPLPPGEGKIQDAKWSPDGDRLAFVRDN----NLYVRELATGKEI 76
|
....*..
gi 515954379 326 RITWEGS 332
Cdd:pfam00930 77 QITSDGS 83
|
|
| tolB |
PRK04043 |
Tol-Pal system protein TolB; |
208-355 |
7.59e-04 |
|
Tol-Pal system protein TolB;
Pssm-ID: 235212 [Multi-domain] Cd Length: 419 Bit Score: 41.52 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 208 SPDGSKLAYVTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQIRQ-VTDG 286
Cdd:PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQvVFHG 320
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515954379 287 RSNNTEPTWfpdSQNLAFTSDQ------AGRPQVYKVNINGGAAQRITWEGsQNQDADVSADGKTMVMVSTAGGQ 355
Cdd:PRK04043 321 KNNSSVSTY---KNYIVYSSREtnnefgKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQ 391
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
88-324 |
1.21e-03 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 40.45 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 88 PAAWSALGIDAVVVGQVTPAPDGGYNVAYQLVDTGGAPGTVLAQNTYKVnkqwlrYAGHTASDEVFEKLTGIKGafrtRI 167
Cdd:COG3391 12 LLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGL------GLGAAAVADADGADAGADG----RR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 168 AYVVQTNGGqfpyelRVSDYDGYN-----QFTVHRSPQPLmspAWSPDGSKLaYVTFESGRSALVIQTLSNGAVRQVASF 242
Cdd:COG3391 82 LYVANSGSG------RVSVIDLATgkvvaTIPVGGGPRGL---AVDPDGGRL-YVADSGNGRVSVIDTATGKVVATIPVG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 243 PRHNGApAFSPDGTKlafalsktgslnLYVMDIGSGQIR---QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRpQVYKVNI 319
Cdd:COG3391 152 AGPHGI-AVDPDGKR------------LYVANSGSNTVSvivSVIDTATGKVVATIPVGGGPVGVAVSPDGR-RLYVANR 217
|
....*
gi 515954379 320 NGGAA 324
Cdd:COG3391 218 GSNTS 222
|
|
| Pectate_lyase22 |
pfam14583 |
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more ... |
251-307 |
1.23e-03 |
|
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
Pssm-ID: 434052 [Multi-domain] Cd Length: 386 Bit Score: 40.77 E-value: 1.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 515954379 251 FSPDGTKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWF-PDSQNLAFTSD 307
Cdd:pfam14583 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLsPDDDALFYVKD 100
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
198-224 |
1.93e-03 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 35.57 E-value: 1.93e-03
10 20
....*....|....*....|....*..
gi 515954379 198 SPQPLMSPAWSPDGSKLAYVTFESGRS 224
Cdd:pfam07676 7 TPGNETAPSWSPDGKRLAFSSDRDGKP 33
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
194-307 |
7.36e-03 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 38.35 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515954379 194 TVHRSPQPLMSPAWSPDGSKLAyvtfeSGRSALVIQTLSNGAVRQVASFPRHNGAP---AFSPDGTKLAFAlSKTGSLNL 270
Cdd:COG2319 283 TLTGHSGGVNSVAFSPDGKLLA-----SGSDDGTVRLWDLATGKLLRTLTGHTGAVrsvAFSPDGKTLASG-SDDGTVRL 356
|
90 100 110
....*....|....*....|....*....|....*...
gi 515954379 271 YvmDIGSGQIRQVTDGRSNN-TEPTWFPDSQNLAFTSD 307
Cdd:COG2319 357 W--DLATGELLRTLTGHTGAvTSVAFSPDGRTLASGSA 392
|
|
| |
