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Conserved domains on  [gi|516011411|ref|WP_017441994|]
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MULTISPECIES: fimbrial protein [Salmonella]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
1-176 1.45e-31

Fimbrial protein;


The actual alignment was detected with superfamily member PRK15220:

Pssm-ID: 445401  Cd Length: 178  Bit Score: 112.21  E-value: 1.45e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   1 MKRSIISAAVLSAVFMSAGAFA--EDTGTLNIIGTVVGTSCQFVsGNNSEDVVLSQVETNVFDTMSPGSIYTPITEQTT- 77
Cdd:PRK15220   1 MKRSLIAASVLSAVFMSAGAFAadEDMGELKINGKVVGTTCQFL-GTNSATIELNQVGVDRLANLNPGQIYTGYTNPTAm 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411  78 HLKIYCpgiEEGKSLNITVKAPTLDAEGVIgnTLPDG-AKGVGFALKYKNKAVDHSSNNIIVGATDFDSDKIYTIPLDVY 156
Cdd:PRK15220  80 PLKVKC---TQGAAPRISFSRSQFVDNMDI--TKNNGsANGAGFAVYYDGTDVKPDPETGVTLNPNKFENGVYTLNFSAR 154

                        170       180
                 ....*....|....*....|
gi 516011411 157 YAKQGtDAVTSGDVNATVTL 176
Cdd:PRK15220 155 YARVD-NDVTSGDVESTLTL 173
 
Name Accession Description Interval E-value
PRK15220 PRK15220
fimbrial protein YehD;
1-176 1.45e-31

fimbrial protein YehD;


Pssm-ID: 237928  Cd Length: 178  Bit Score: 112.21  E-value: 1.45e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   1 MKRSIISAAVLSAVFMSAGAFA--EDTGTLNIIGTVVGTSCQFVsGNNSEDVVLSQVETNVFDTMSPGSIYTPITEQTT- 77
Cdd:PRK15220   1 MKRSLIAASVLSAVFMSAGAFAadEDMGELKINGKVVGTTCQFL-GTNSATIELNQVGVDRLANLNPGQIYTGYTNPTAm 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411  78 HLKIYCpgiEEGKSLNITVKAPTLDAEGVIgnTLPDG-AKGVGFALKYKNKAVDHSSNNIIVGATDFDSDKIYTIPLDVY 156
Cdd:PRK15220  80 PLKVKC---TQGAAPRISFSRSQFVDNMDI--TKNNGsANGAGFAVYYDGTDVKPDPETGVTLNPNKFENGVYTLNFSAR 154

                        170       180
                 ....*....|....*....|
gi 516011411 157 YAKQGtDAVTSGDVNATVTL 176
Cdd:PRK15220 155 YARVD-NDVTSGDVESTLTL 173
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-181 1.69e-16

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 72.76  E-value: 1.69e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   1 MKRSIIsaAVLSAVFMSAGAFAEDTGTLNIIGTVVGTSCQFVSGNNSEDVVLSQVETNVFDTMSPGSIYTPITeqtthLK 80
Cdd:COG3539    1 MKKLLL--ALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFS-----IK 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411  81 I-YCPGiEEGKSLNITVKAPT-LDAEGVIGNTLPDGAKGVGFALKyknkavDHSSNNIIVGAT----DFDSDKIYTIPLD 154
Cdd:COG3539   74 LtNCDA-GTSNSVKVTFTGTAdSANPGLLANTGSGGASGVGIQLL------DSDGTPIPLGTPssavTLTSNGSATLPFY 146

                        170       180
                 ....*....|....*....|....*..
gi 516011411 155 VYYAKQGTdAVTSGDVNATVTLQAAYN 181
Cdd:COG3539  147 ARYVATGA-TVTAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
33-181 6.80e-05

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 41.27  E-value: 6.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   33 TVVGTSCQFVSGNNSEdVVLSQVETNVFDTMSPGSiytpiTEQTTHLKIYCPGIEEGKSLNITV--KAPTLDAEGVIGNT 110
Cdd:pfam00419   8 TRVPATCKITAGTPIE-VDFGQIPVNELNAGGEGS-----RQKPFSITLECSSGSSAVKVTVGLfgTADASSPNLLLTGN 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 516011411  111 LPDGAKGVGFALKYKNKAVDHSSNNIIVGATDFDSDKIYTIPLDVYYAKQGTDAVTSGDVNATVTLQAAYN 181
Cdd:pfam00419  82 GAGAATGVGIRLYDANGGALPPNNGTSSIPVSATAAVATGITFTASLVATTGGTPTAGDFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
PRK15220 PRK15220
fimbrial protein YehD;
1-176 1.45e-31

fimbrial protein YehD;


Pssm-ID: 237928  Cd Length: 178  Bit Score: 112.21  E-value: 1.45e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   1 MKRSIISAAVLSAVFMSAGAFA--EDTGTLNIIGTVVGTSCQFVsGNNSEDVVLSQVETNVFDTMSPGSIYTPITEQTT- 77
Cdd:PRK15220   1 MKRSLIAASVLSAVFMSAGAFAadEDMGELKINGKVVGTTCQFL-GTNSATIELNQVGVDRLANLNPGQIYTGYTNPTAm 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411  78 HLKIYCpgiEEGKSLNITVKAPTLDAEGVIgnTLPDG-AKGVGFALKYKNKAVDHSSNNIIVGATDFDSDKIYTIPLDVY 156
Cdd:PRK15220  80 PLKVKC---TQGAAPRISFSRSQFVDNMDI--TKNNGsANGAGFAVYYDGTDVKPDPETGVTLNPNKFENGVYTLNFSAR 154

                        170       180
                 ....*....|....*....|
gi 516011411 157 YAKQGtDAVTSGDVNATVTL 176
Cdd:PRK15220 155 YARVD-NDVTSGDVESTLTL 173
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-181 1.69e-16

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 72.76  E-value: 1.69e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   1 MKRSIIsaAVLSAVFMSAGAFAEDTGTLNIIGTVVGTSCQFVSGNNSEDVVLSQVETNVFDTMSPGSIYTPITeqtthLK 80
Cdd:COG3539    1 MKKLLL--ALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFS-----IK 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411  81 I-YCPGiEEGKSLNITVKAPT-LDAEGVIGNTLPDGAKGVGFALKyknkavDHSSNNIIVGAT----DFDSDKIYTIPLD 154
Cdd:COG3539   74 LtNCDA-GTSNSVKVTFTGTAdSANPGLLANTGSGGASGVGIQLL------DSDGTPIPLGTPssavTLTSNGSATLPFY 146

                        170       180
                 ....*....|....*....|....*..
gi 516011411 155 VYYAKQGTdAVTSGDVNATVTLQAAYN 181
Cdd:COG3539  147 ARYVATGA-TVTAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
33-181 6.80e-05

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 41.27  E-value: 6.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   33 TVVGTSCQFVSGNNSEdVVLSQVETNVFDTMSPGSiytpiTEQTTHLKIYCPGIEEGKSLNITV--KAPTLDAEGVIGNT 110
Cdd:pfam00419   8 TRVPATCKITAGTPIE-VDFGQIPVNELNAGGEGS-----RQKPFSITLECSSGSSAVKVTVGLfgTADASSPNLLLTGN 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 516011411  111 LPDGAKGVGFALKYKNKAVDHSSNNIIVGATDFDSDKIYTIPLDVYYAKQGTDAVTSGDVNATVTLQAAYN 181
Cdd:pfam00419  82 GAGAATGVGIRLYDANGGALPPNNGTSSIPVSATAAVATGITFTASLVATTGGTPTAGDFNATATIVVDYQ 152
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 1-181 1.68e-04

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 40.34  E-value: 1.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   1 MKRSIISAAVLSAVFMSAGAFAEDTGTLNIIGTVVGTSCQFVSGNNSEDVVLSQVETNVFDTMSPGSIYTPIteqttHLK 80
Cdd:PRK15209   1 MKKVVFALSALALTSTSVFAAESGDGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPF-----QIK 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411  81 IYCPGIEEGKSLNITVK--APTLDAEGVIGNTLPDGAKGVGFAL-KYKNKAVDHSSNNiivGATDFDSDKIYTIPLDVYY 157
Cdd:PRK15209  76 LEDCDITTNKKVNVSFNgvGDADDSTLVSVSTEAGAATGVGIGIyDNANTLVELNTGK---STTTLAAGQTVLYFTANYV 152

                        170       180
                 ....*....|....*....|....
gi 516011411 158 AKQgtDAVTSGDVNATVTLQAAYN 181
Cdd:PRK15209 153 STK--DTVTTGYGNAEVDFNLSYE 174
lpfA PRK15289
fimbrial protein; Provisional
 1-117 2.40e-04

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 39.94  E-value: 2.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411   1 MKRSII-SAAVLSAVFMSAGAFAEDtGTLNIIGTVVGTSCQFVSGNNSEDVVLSQVETNVFDTMspGSIYTPiteQTTHL 79
Cdd:PRK15289   1 MKRNIIgGAFTLASLMLAGHALAED-GVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGV--GSLASP---QKFSI 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 516011411  80 KIY-CPGIEEGKSLNIT-VKAPTLDAEGVIGNTLPDGAKG 117
Cdd:PRK15289  75 KLEnCPATYTQAAVRFDgTEAPGGDGDLKVGTPLTAGNPG 114
PRK15305 PRK15305
fimbrial protein StkG;
100-180 9.04e-03

fimbrial protein StkG;


Pssm-ID: 185205  Cd Length: 353  Bit Score: 35.78  E-value: 9.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516011411 100 TLDAEGVIGNTLPDGAKGVGFALKYKNKA---VDHSSNNIIVGATDFDSDKIYTIPLDVYYAKQGTDAVTSGDVNATVTL 176
Cdd:PRK15305 269 NLFTNSITSNSSVTAAGGVGVKISSPAYSqihADSSPEYIAVGNIIGMPVTSVNANFKAKLVKTGTEAVTPGIFGSSVTF 348


                 ....
gi 516011411 177 QAAY 180
Cdd:PRK15305 349 QVTY 352
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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