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Conserved domains on  [gi|516061959|ref|WP_017492542|]
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DUF1480 family protein [Rouxiella badensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1480 super family cl06407
Protein of unknown function (DUF1480); This family consists of several hypothetical ...
 1-78 1.51e-40

Protein of unknown function (DUF1480); This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam07351:

Pssm-ID: 429421  Cd Length: 78  Bit Score: 127.65  E-value: 1.51e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516061959   1 MGKANVRIGSFEIDDAQHTSPDgQGGDKVHIPCKSDPDLCMQLDGWDENVSVPAVVDGRQSILYKEKYDSQKDEWIMR 78
Cdd:pfam07351  1 MGKTKLRIGSFEIDDAELSSPH-KGERTLSIPCKSDPDLCMQLDAWDEHTSIPAVLNGKHSVLYRKHYDRQKDAWVMR 77
 
Name Accession Description Interval E-value
DUF1480 pfam07351
Protein of unknown function (DUF1480); This family consists of several hypothetical ...
 1-78 1.51e-40

Protein of unknown function (DUF1480); This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.


Pssm-ID: 429421  Cd Length: 78  Bit Score: 127.65  E-value: 1.51e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516061959   1 MGKANVRIGSFEIDDAQHTSPDgQGGDKVHIPCKSDPDLCMQLDGWDENVSVPAVVDGRQSILYKEKYDSQKDEWIMR 78
Cdd:pfam07351  1 MGKTKLRIGSFEIDDAELSSPH-KGERTLSIPCKSDPDLCMQLDAWDEHTSIPAVLNGKHSVLYRKHYDRQKDAWVMR 77
 
Name Accession Description Interval E-value
DUF1480 pfam07351
Protein of unknown function (DUF1480); This family consists of several hypothetical ...
 1-78 1.51e-40

Protein of unknown function (DUF1480); This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.


Pssm-ID: 429421  Cd Length: 78  Bit Score: 127.65  E-value: 1.51e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516061959   1 MGKANVRIGSFEIDDAQHTSPDgQGGDKVHIPCKSDPDLCMQLDGWDENVSVPAVVDGRQSILYKEKYDSQKDEWIMR 78
Cdd:pfam07351  1 MGKTKLRIGSFEIDDAELSSPH-KGERTLSIPCKSDPDLCMQLDAWDEHTSIPAVLNGKHSVLYRKHYDRQKDAWVMR 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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