NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|516130453|ref|WP_017561033|]
View 

MULTISPECIES: CotD family spore coat protein [Bacillus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Spore-coat_CotD super family cl12676
Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is ...
 1-72 1.41e-14

Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is an inner spore coat protein that is expressed in the middle phase of mother cell gene expression. Along with CotD, CotH, CotS and CotT it is assumed to assemble into the loose skeleton of the matrix, between the shells of SpoIVA and CotE. Coat proteins do not share much sequence similarity between species, but this does not imply they do not share secondary, tertiary, or quaternary features.


The actual alignment was detected with superfamily member COG5879:

Pssm-ID: 472345  Cd Length: 87  Bit Score: 64.32  E-value: 1.41e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516130453   1 MHHCHPCfgghkptgpicTTAPVVHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVV 72
Cdd:COG5879    1 PMHCPPH-----------VTPPIVHPTKCNVQHNFSETVVPHIHPSHTTTVNHHVYKHQHYFPHTTSVVNEV 61
 
Name Accession Description Interval E-value
CotD COG5879
Spore coat protein CotD [Cell cycle control, cell division, chromosome partitioning];
1-72 1.41e-14

Spore coat protein CotD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444581  Cd Length: 87  Bit Score: 64.32  E-value: 1.41e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516130453   1 MHHCHPCfgghkptgpicTTAPVVHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVV 72
Cdd:COG5879    1 PMHCPPH-----------VTPPIVHPTKCNVQHNFSETVVPHIHPSHTTTVNHHVYKHQHYFPHTTSVVNEV 61
Spore-coat_CotD pfam11122
Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is ...
 21-112 6.11e-14

Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is an inner spore coat protein that is expressed in the middle phase of mother cell gene expression. Along with CotD, CotH, CotS and CotT it is assumed to assemble into the loose skeleton of the matrix, between the shells of SpoIVA and CotE. Coat proteins do not share much sequence similarity between species, but this does not imply they do not share secondary, tertiary, or quaternary features.


Pssm-ID: 371387  Cd Length: 86  Bit Score: 62.69  E-value: 6.11e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516130453   21 APVVHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVVdpidpgFGGGCGPCGHGHHHHHHGHQIS 100
Cdd:pfam11122   1 PTVVHPTKQNVVQTTSEYIVPEIHPTHTTHVHNHVVKNVHFFPHSESDQEQT------VNQQYNCGPNVPDSSNVAGAMA 74

                          90
                  ....*....|..
gi 516130453  101 PFGPGPNVSPFG 112
Cdd:pfam11122  75 PPGMGPVVGAMS 86
 
Name Accession Description Interval E-value
CotD COG5879
Spore coat protein CotD [Cell cycle control, cell division, chromosome partitioning];
1-72 1.41e-14

Spore coat protein CotD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444581  Cd Length: 87  Bit Score: 64.32  E-value: 1.41e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516130453   1 MHHCHPCfgghkptgpicTTAPVVHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVV 72
Cdd:COG5879    1 PMHCPPH-----------VTPPIVHPTKCNVQHNFSETVVPHIHPSHTTTVNHHVYKHQHYFPHTTSVVNEV 61
Spore-coat_CotD pfam11122
Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is ...
 21-112 6.11e-14

Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is an inner spore coat protein that is expressed in the middle phase of mother cell gene expression. Along with CotD, CotH, CotS and CotT it is assumed to assemble into the loose skeleton of the matrix, between the shells of SpoIVA and CotE. Coat proteins do not share much sequence similarity between species, but this does not imply they do not share secondary, tertiary, or quaternary features.


Pssm-ID: 371387  Cd Length: 86  Bit Score: 62.69  E-value: 6.11e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516130453   21 APVVHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVVdpidpgFGGGCGPCGHGHHHHHHGHQIS 100
Cdd:pfam11122   1 PTVVHPTKQNVVQTTSEYIVPEIHPTHTTHVHNHVVKNVHFFPHSESDQEQT------VNQQYNCGPNVPDSSNVAGAMA 74

                          90
                  ....*....|..
gi 516130453  101 PFGPGPNVSPFG 112
Cdd:pfam11122  75 PPGMGPVVGAMS 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH