|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
8-514 |
4.33e-119 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 360.59 E-value: 4.33e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 8 LQNFGKSLYGPVLILPIVGLFIAFGNVLGNGNLAEYLPFLGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPIGLATRDK 87
Cdd:PRK10110 15 FQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 88 GYAALIGLVTFIVFINAMNVTLQLQGELAP--AEQMKAAGQSMVLGVQVLEMGVFAGILTGALSGYLYNKYSGVQFNGAM 165
Cdd:PRK10110 95 GVAAFAGFVGYAVMNLAVNFWLTNKGILPTtdAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDAL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 166 AIYSGHCFVAIVMLPVSMLLGVVMSELWPYAQHGISALALAIKGSGPFGVAIYGFLERILVPTGLHHLVYTPFLYTELGG 245
Cdd:PRK10110 175 AFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGG 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 246 TQEVCGATYQGARNIYFAEMACPDVKQLSSTVvwdARGIS--KM----FGLPAAALAMYMTAKPERKAIAKAILIPAALT 319
Cdd:PRK10110 255 TQEVCGQTVSGALTIFQAQLSCPTTHGFSESA---TRFLSqgKMpaflGGLPGAALAMYHCARPENRHKIKGLLISGVIA 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 320 SLLVGVTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVhAIGAN--GIIDFILYNLPLGTeKSNWPMYIVVGLIMFA 397
Cdd:PRK10110 332 CVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGV-TIGNTdgNIIDFVVFGILHGL-STKWYMVPVVAAIWFV 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 398 LYFVVFRFLILRFNMKTPGREDEDQETrlYSKQEYQAKGNNDELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDE 477
Cdd:PRK10110 410 VYYVIFRFAITRFNLKTPGRDSEVASS--IEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDV 487
|
490 500 510
....*....|....*....|....*....|....*...
gi 516289613 478 PRLKATGAKGIIK-QGNNVQVVYGLHVKKMREAVETFL 514
Cdd:PRK10110 488 QALKDNRAIGVVQlNQHNLQVVIGPQVQSVKDEMAGLM 525
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
5-514 |
4.56e-119 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 360.29 E-value: 4.56e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 5 VNALQNFGKSLYGPVLILPIVGLFIAFGNVLGN----GNLAEylpflGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPI 80
Cdd:TIGR02005 1 MNAIQRFGGAMFVPVLLFAFAGIVVGFAILFKNpdimGSLAD-----QNTFWYKFWSVIEEGGWTVFRQMPLIFVVGLPI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 81 GLATRDKGYAALIGLVTFIV---FINAM--------NVTLQLQGELApaeqmkAAGQSMVLGVQVLEMGVFAGILTGALS 149
Cdd:TIGR02005 76 GLAKKAQGRACLAALMGYLTfnyFINAIltqwgssfGVNFTQGVGVG------VSGLTSIAGIKTLDTSIIGAIIISGII 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 150 GYLYNKYSGVQFNGAMAIYSGHCFVAI----VMLPVSMLLGVVmselWPYAQHGISALALAIKGSGPFGVAIYGFLERIL 225
Cdd:TIGR02005 150 TYIHNRFFDKRLPVFLGIFQGTTFVVTiaffVMLPCAAITCLV----WPKVQMGIGSLQAFLISSGYIGVWLYTFLERIL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 226 VPTGLHHLVYTPFLYtelGGTQEVCGATYQGARNIY-FAEMACPdVKQLSSTVVWDARGISKMFGLPAAALAMYMTAKPE 304
Cdd:TIGR02005 226 IPTGLHHFIYGPFIF---GPAVVNHGIQAYWAQHLNeFAKSTKP-LKELFPYGGFALHGNSKVFGCLGIALAMYATAPPE 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 305 RKAIAKAILIPAALTSLLVGVTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVHAIGANGIIDFILYN-LPLGteKS 383
Cdd:TIGR02005 302 NRKKVAGLLIPATLTAVVVGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVGNMGGGLIDFIATNwLPLF--KN 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 384 NWPMY---IVVGLIMFALYFVVFRFLILRFNMKTPGREDEDQETRLYSKQEYQAK------GNNDELGES----IVVGLG 450
Cdd:TIGR02005 380 HWGTYvtqIIIGLCFTAIYFLVFRFLILKFNIPTPGREDTEEEVKLYSKADYKAKkgdsveSKRASSGNDkaayFLQALG 459
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516289613 451 GRENIEVVDNCYTRLRVTVKDVA-IIDEPRLKATGAKGIIKQGNNVQVVYGLHVKKMREAVETFL 514
Cdd:TIGR02005 460 GKENIKDVTNCATRLRISVKDESkVLDDEVFKKAGAHGVVRSGKAIQVIVGLSVPQVREAFEQLV 524
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-511 |
5.93e-81 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 259.49 E-value: 5.93e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 1 MKRAVNALQNFGKSLYGPVLILPIVGLFIAFGNVLGNGNLaeylpFLGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPI 80
Cdd:COG1263 5 KNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGL-----LGEGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 81 GLATRdkgyAALIGLVTFIVFINAMNVTLQLQGelapaeqmkaaGQSMVLGVQVL---EMGVFAGILTGALSGYLyNKYS 157
Cdd:COG1263 80 GFGGN----PALAAVIGYLLVHPTLLNAYAVAG-----------GYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 158 GVQFNGAMAIYsghcFVAIVMLPVSMLLGV-VMSELWPYAQHGISALALAIKG-SGPFGVAIYGFLERILVPTGLHHLVY 235
Cdd:COG1263 144 KKKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIYGlAGAIGGFIYGFLYRLLVPTGLHHGLN 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 236 TPFLYtELGGTqevcGATYQgarniyFAEMACpdvkqlsstvvwdargisKMFGLPAAALAMYMTAKPERKAiaKAILIP 315
Cdd:COG1263 220 PIFWF-LLGGT----GDDGL------FPILAA------------------AMFGQPGAALAVYLKAKPNKKV--KGLAIS 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 316 AALTSLLVGVTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVHA--IGANGIIDFILYNLPLGTeksNWpMYIVVGL 393
Cdd:COG1263 269 AALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAfsFGVGGLIDFPSILNPGAT---NL-LLYLIGL 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 394 IMFALYFVVFRFLIlrfnmktpGREDEDQETRLYSKQEYQAKGNndelgESIVVGLGGRENIEVVDNCYTRLRVTVKDVA 473
Cdd:COG1263 345 VIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEA-----EAAAAALGGGGGLLLLEADITVLLLTLVDVV 411
|
490 500 510
....*....|....*....|....*....|....*...
gi 516289613 474 IIDEPRLKATGAKGIIKQGNNVQVVYGLHVKKMREAVE 511
Cdd:COG1263 412 IVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVI 449
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
12-349 |
2.59e-47 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 166.75 E-value: 2.59e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 12 GKSLYGPVLILPIVGLFIAFGNVlgnGNLAEYLPFLGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPIGLATRDkGYAA 91
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNL---PNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGD-GVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 92 LIGLVTFIVFinamnvtLQLQGELAPAEQMKAAGQSMVLGVQVLEMGVFAGILTGALSGYLYNKYSGVQFN---GAMAIY 168
Cdd:pfam02378 77 AAGLIGLLSF-------NLAAAISVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIklpDSLPFF 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 169 SGHCFVAIVMLPVSMLL-GVVMSELWPYAQHGISALALAIKGSGP-FGVAIYGFLERILVPTGLHHLVYTPFLYTELGGT 246
Cdd:pfam02378 150 VGKRFVPIITGFVTLLViGPVLGLIWPAIQGGLNALGLLLIIAGGiLGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGS 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 247 QEVCGATYQGARNIYFAEMacpdvkqlsstvvwdarGISKMFGLPAAALAMYMTAKPERKAIAKAILIPAALTSLLVGVT 326
Cdd:pfam02378 230 NPIANQQAYGAGAAHILTG-----------------GFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGIT 292
|
330 340
....*....|....*....|...
gi 516289613 327 EPIEFSFLFVAPLLFVVHAVLTG 349
Cdd:pfam02378 293 EPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
439-503 |
1.22e-21 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 88.74 E-value: 1.22e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516289613 439 DELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKAT-GAKGIIKQGNNVQVVYGLHV 503
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLgGVKGVVKNGGQYQVIIGPGV 66
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
8-514 |
4.33e-119 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 360.59 E-value: 4.33e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 8 LQNFGKSLYGPVLILPIVGLFIAFGNVLGNGNLAEYLPFLGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPIGLATRDK 87
Cdd:PRK10110 15 FQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 88 GYAALIGLVTFIVFINAMNVTLQLQGELAP--AEQMKAAGQSMVLGVQVLEMGVFAGILTGALSGYLYNKYSGVQFNGAM 165
Cdd:PRK10110 95 GVAAFAGFVGYAVMNLAVNFWLTNKGILPTtdAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDAL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 166 AIYSGHCFVAIVMLPVSMLLGVVMSELWPYAQHGISALALAIKGSGPFGVAIYGFLERILVPTGLHHLVYTPFLYTELGG 245
Cdd:PRK10110 175 AFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGG 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 246 TQEVCGATYQGARNIYFAEMACPDVKQLSSTVvwdARGIS--KM----FGLPAAALAMYMTAKPERKAIAKAILIPAALT 319
Cdd:PRK10110 255 TQEVCGQTVSGALTIFQAQLSCPTTHGFSESA---TRFLSqgKMpaflGGLPGAALAMYHCARPENRHKIKGLLISGVIA 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 320 SLLVGVTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVhAIGAN--GIIDFILYNLPLGTeKSNWPMYIVVGLIMFA 397
Cdd:PRK10110 332 CVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGV-TIGNTdgNIIDFVVFGILHGL-STKWYMVPVVAAIWFV 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 398 LYFVVFRFLILRFNMKTPGREDEDQETrlYSKQEYQAKGNNDELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDE 477
Cdd:PRK10110 410 VYYVIFRFAITRFNLKTPGRDSEVASS--IEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDV 487
|
490 500 510
....*....|....*....|....*....|....*...
gi 516289613 478 PRLKATGAKGIIK-QGNNVQVVYGLHVKKMREAVETFL 514
Cdd:PRK10110 488 QALKDNRAIGVVQlNQHNLQVVIGPQVQSVKDEMAGLM 525
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
5-514 |
4.56e-119 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 360.29 E-value: 4.56e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 5 VNALQNFGKSLYGPVLILPIVGLFIAFGNVLGN----GNLAEylpflGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPI 80
Cdd:TIGR02005 1 MNAIQRFGGAMFVPVLLFAFAGIVVGFAILFKNpdimGSLAD-----QNTFWYKFWSVIEEGGWTVFRQMPLIFVVGLPI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 81 GLATRDKGYAALIGLVTFIV---FINAM--------NVTLQLQGELApaeqmkAAGQSMVLGVQVLEMGVFAGILTGALS 149
Cdd:TIGR02005 76 GLAKKAQGRACLAALMGYLTfnyFINAIltqwgssfGVNFTQGVGVG------VSGLTSIAGIKTLDTSIIGAIIISGII 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 150 GYLYNKYSGVQFNGAMAIYSGHCFVAI----VMLPVSMLLGVVmselWPYAQHGISALALAIKGSGPFGVAIYGFLERIL 225
Cdd:TIGR02005 150 TYIHNRFFDKRLPVFLGIFQGTTFVVTiaffVMLPCAAITCLV----WPKVQMGIGSLQAFLISSGYIGVWLYTFLERIL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 226 VPTGLHHLVYTPFLYtelGGTQEVCGATYQGARNIY-FAEMACPdVKQLSSTVVWDARGISKMFGLPAAALAMYMTAKPE 304
Cdd:TIGR02005 226 IPTGLHHFIYGPFIF---GPAVVNHGIQAYWAQHLNeFAKSTKP-LKELFPYGGFALHGNSKVFGCLGIALAMYATAPPE 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 305 RKAIAKAILIPAALTSLLVGVTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVHAIGANGIIDFILYN-LPLGteKS 383
Cdd:TIGR02005 302 NRKKVAGLLIPATLTAVVVGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVGNMGGGLIDFIATNwLPLF--KN 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 384 NWPMY---IVVGLIMFALYFVVFRFLILRFNMKTPGREDEDQETRLYSKQEYQAK------GNNDELGES----IVVGLG 450
Cdd:TIGR02005 380 HWGTYvtqIIIGLCFTAIYFLVFRFLILKFNIPTPGREDTEEEVKLYSKADYKAKkgdsveSKRASSGNDkaayFLQALG 459
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516289613 451 GRENIEVVDNCYTRLRVTVKDVA-IIDEPRLKATGAKGIIKQGNNVQVVYGLHVKKMREAVETFL 514
Cdd:TIGR02005 460 GKENIKDVTNCATRLRISVKDESkVLDDEVFKKAGAHGVVRSGKAIQVIVGLSVPQVREAFEQLV 524
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
8-511 |
7.26e-113 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 342.52 E-value: 7.26e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 8 LQNFGKSLYGPVLILPIVGLFIAFGNVLGNGNLaeylpflghpliqSVGQLIAKSAVSVLVNLALVFAVGIPIGLATRDK 87
Cdd:TIGR01998 5 FQKLGRALMLPIATLPVAALLLRIGNATHGADL-------------LVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDND 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 88 GYAALIGLVTFIVFinamnVTLQLQGELAPAEQMKAAGQSMVLGVQvlemGVFAGILTGALSGYLYNKYSGVQFNGAMAI 167
Cdd:TIGR01998 72 GAAALAGLVAYFVV-----TKVLSPPPLAAALGIKSEINMAFSAWK----NVFVGILAGLIAGALYNRFSEIKLPEALSF 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 168 YSGHCFVAIVMLPVSMLLGVVMSELWPYAQHGISALALAIKGSGPFGVAIYGFLERILVPTGLHHLVYTPFLYtELGGTQ 247
Cdd:TIGR01998 143 FSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWF-DVAGIN 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 248 EVCGATYQGARNIYFAemacpdvkqlsSTVVWDARGIS-KMFGLPAAALAMYMTAKPERKAIAKAILIPAALTSLLVGVT 326
Cdd:TIGR01998 222 DFGNFTGGGDLNRFKG-----------IAGMFMAGFFPiMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVT 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 327 EPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVHA--IGANGIIDFIL-YNLPLgteKSNWPMYIVVGLIMFALYFVVF 403
Cdd:TIGR01998 291 EPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAgfSFSAGLIDYVLsFNNPT---ANQPLMLLVQGLVFFALYYVVF 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 404 RFLILRFNMKTPGREDEDQETRLySKQEYQAKGNNDELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKAT 483
Cdd:TIGR01998 368 RFAIRRFNLKTPGREDEDPEGAT-AAAVTSTGDSKMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKAL 446
|
490 500
....*....|....*....|....*....
gi 516289613 484 GAKGIIKQG-NNVQVVYGLHVKKMREAVE 511
Cdd:TIGR01998 447 GARGVVKLGkHNLQVILGPLAEIVAGEMK 475
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
8-514 |
7.61e-113 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 344.13 E-value: 7.61e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 8 LQNFGKSLYGPVLILPIVGLFIAFGNVLGNGNLAEYLPFLGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPIGLATRDK 87
Cdd:TIGR02004 8 FQGLGKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPFLGKPAFKIIFQWMSTIGLVAFAYLPVMFAMAIPLGLAREEK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 88 GYAALIGLVTFIVFINAMNVTLQLQGELAPAEQMKAAGQSMVLGVQVLEMGVFAGILTGALSGYLYNKYSGVQFNGAMAI 167
Cdd:TIGR02004 88 GVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLREAGQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYTVQMPDALAF 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 168 YSGHCFVAIVMLPVSMLLGVVMSELWPYAQHGISALALAIKGSGPFGVAIYGFLERILVPTGLHHLVYTPFLYTELGGTQ 247
Cdd:TIGR02004 168 FGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMIRFTEAGGSA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 248 EVCGATYQGARNIYFAEMACPDVKQLSSTV---VWDARGISKMFGLPAAALAMYMTAKPERKAIAKAILIPAALTSLLVG 324
Cdd:TIGR02004 248 VVCGKEVSGALNIFYAELQCNLPISAVPSAtafLSQGKMPTFLGGLPGAALAMYHCARPANRHKIKALLLSGVVACAVGG 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 325 VTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVHAIGANG-IIDFILYNLPLGTeKSNWPMYIVVGLIMFALYFVVF 403
Cdd:TIGR02004 328 ITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIGNTDGnLIDFLVFGVLQGT-YTKWYLVPIVAAIWFVVYYFVF 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 404 RFLILRFNMKTPGREDEDQETRlYSKQEYQAKGNNDELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKAT 483
Cdd:TIGR02004 407 KTAITTFDLKTPGREKVLDAEE-YTEQEVAYKKTGGYDAAAILAALGGQENIQSLDNCITRLRLVVADANKVDDAKLKQL 485
|
490 500 510
....*....|....*....|....*....|..
gi 516289613 484 GAKGIIK-QGNNVQVVYGLHVKKMREAVETFL 514
Cdd:TIGR02004 486 GALGVVKlDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
1-500 |
1.44e-101 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 313.57 E-value: 1.44e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 1 MKRAVNALQNFGKSLYGPVLILPIVGLFIAfgnvLGNGNLAeYLPflghpliQSVGQLIAKSAVSVLVNLALVFAVGIPI 80
Cdd:PRK11089 2 FKNAFANLQKVGKSLMLPVSVLPIAGILLG----VGSANFS-WLP-------AVVSHVMAEAGGSVFANMPLIFAIGVAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 81 GLaTRDKGYAALIGLVTFIVFINAMNVTLQLQGELAPAEqmkaagqsmVLGVQVLEMGVFAGILTGALSGYLYNKYSGVQ 160
Cdd:PRK11089 70 GF-TNNDGVSALAAVVAYGIMVKTMAVVAPLVLHLPAEE---------IAAKHLADTGVLGGIIAGAIAAYMFNRFYRIK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 161 FNGAMAIYSGHCFVAIVMLPVSMLLGVVMSELWPYAQHGISALALAIKGSGP---FGvaIYGFLERILVPTGLHHLVYTP 237
Cdd:PRK11089 140 LPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPvvaFG--IYGFVERSLVPFGLHHIWNVP 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 238 FLYtELGGTQEVCGATYQGARNIYFAemACPDVKQLSSTVVWdargisKMFGLPAAALAMYMTAKPERKAIAKAILIPAA 317
Cdd:PRK11089 218 FQM-QIGEYTNAAGQVFHGDIPRYMA--GDPTAGKLSGGFLF------KMYGLPAAAIAIWHSAKPENRAKVGGIMISAA 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 318 LTSLLVGVTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFG-VHAIG-ANGIIDFILynlpLGTEKSNWPMYIVVGLIM 395
Cdd:PRK11089 289 LTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGmRDGTSfSHGLIDFIV----LSGNSSKLWLFPIVGIGY 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 396 FALYFVVFRFLILRFNMKTPGREDEDQEtrlyskqeyQAKGNNDELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAII 475
Cdd:PRK11089 365 AIVYYTIFRVLIKALDLKTPGREDETED---------AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKV 435
|
490 500
....*....|....*....|....*
gi 516289613 476 DEPRLKATGAKGIIKQGNNVQVVYG 500
Cdd:PRK11089 436 DQAGLKKLGAAGVVVAGSGVQAIFG 460
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-511 |
5.93e-81 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 259.49 E-value: 5.93e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 1 MKRAVNALQNFGKSLYGPVLILPIVGLFIAFGNVLGNGNLaeylpFLGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPI 80
Cdd:COG1263 5 KNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGL-----LGEGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 81 GLATRdkgyAALIGLVTFIVFINAMNVTLQLQGelapaeqmkaaGQSMVLGVQVL---EMGVFAGILTGALSGYLyNKYS 157
Cdd:COG1263 80 GFGGN----PALAAVIGYLLVHPTLLNAYAVAG-----------GYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 158 GVQFNGAMAIYsghcFVAIVMLPVSMLLGV-VMSELWPYAQHGISALALAIKG-SGPFGVAIYGFLERILVPTGLHHLVY 235
Cdd:COG1263 144 KKKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIYGlAGAIGGFIYGFLYRLLVPTGLHHGLN 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 236 TPFLYtELGGTqevcGATYQgarniyFAEMACpdvkqlsstvvwdargisKMFGLPAAALAMYMTAKPERKAiaKAILIP 315
Cdd:COG1263 220 PIFWF-LLGGT----GDDGL------FPILAA------------------AMFGQPGAALAVYLKAKPNKKV--KGLAIS 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 316 AALTSLLVGVTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVHA--IGANGIIDFILYNLPLGTeksNWpMYIVVGL 393
Cdd:COG1263 269 AALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAfsFGVGGLIDFPSILNPGAT---NL-LLYLIGL 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 394 IMFALYFVVFRFLIlrfnmktpGREDEDQETRLYSKQEYQAKGNndelgESIVVGLGGRENIEVVDNCYTRLRVTVKDVA 473
Cdd:COG1263 345 VIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEA-----EAAAAALGGGGGLLLLEADITVLLLTLVDVV 411
|
490 500 510
....*....|....*....|....*....|....*...
gi 516289613 474 IIDEPRLKATGAKGIIKQGNNVQVVYGLHVKKMREAVE 511
Cdd:COG1263 412 IVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVI 449
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
8-500 |
2.36e-77 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 255.57 E-value: 2.36e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 8 LQNFGKSLYGPVLILPIVGLFIAFGnvlgngnlaeylpflgHPLIQSVgQLIAKSAVSVLVNLALVFAVGIPIGLATRDK 87
Cdd:PRK10255 7 FQRLGRALQLPIAVLPVAALLLRFG----------------QPDLLNV-AFIAQAGGAIFDNLALIFAIGVASSWSKDSA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 88 GYAALIGLVTFIVFINAMnVTLQlqgelaPAeqmkaagqsmvlgvqvLEMGVFAGILTGALSGYLYNKYSGVQFNGAMAI 167
Cdd:PRK10255 70 GAAALAGAVGYFVLTKAM-VTIN------PE----------------INMGVLAGIITGLVGGAAYNRWSDIKLPDFLSF 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 168 YSGHCFVAIVMLPVSMLLGVVMSELWPYAQHGISALALAIKGSGPFGVAIYGFLERILVPTGLHHLVYTpFLYTELGGTQ 247
Cdd:PRK10255 127 FGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNT-IAWFQIGEFT 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 248 EVCGATYQGARNIYFAEMAcpdvkqlSSTVVWDARGISKMFGLPAAALAMYMTAKPERKAIAKAILIPAALTSLLVGVTE 327
Cdd:PRK10255 206 NAAGTVFHGDINRFYAGDG-------TAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTE 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 328 PIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGVHA--IGANGIIDFIL-YNLPLGTeKSNWpMYIVVGLIMFALYFVVFR 404
Cdd:PRK10255 279 PLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAgfSFSAGAIDYALmYNLPAAS-QNVW-MLLVMGVVFFAIYFVLFS 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 405 FLILRFNMKTPGREDEDQETrlyskQEYQAKGNNDE----LGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRL 480
Cdd:PRK10255 357 AVIRMFNLKTPGREDKEDEI-----VTEEANSNTEEgltqLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMC 431
|
490 500
....*....|....*....|.
gi 516289613 481 KATGAKGIIK-QGNNVQVVYG 500
Cdd:PRK10255 432 KRLGASGVVKlNKQTIQVIVG 452
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
65-360 |
2.93e-55 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 187.14 E-value: 2.93e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 65 SVLVNLALVFAVGIPIGLATRDKGYAALIGLVTFIVFINAMNVTLQLQGELApaeqmkaagqsMVLGVQVLEMGVFAGIL 144
Cdd:TIGR00852 3 AAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVGNFF-----------GFEIAKVGYTGVVGPII 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 145 TGALSGYLYNKYSGVQFNGAMAIYSGHCFVAIVMLPVSMLLGVVMSELWPYAqhGISALALAIKGSGP-FGVAIYGFLER 223
Cdd:TIGR00852 72 VGAIALALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLYSAGGaLGGAIFGFLYR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 224 ILVPTGLHHLVYTPFLYTELGGTQEVCGATYQGARNIYFAEMACP---DVKQLSSTVVWDARGISKMFGLPAAALAMYMT 300
Cdd:TIGR00852 150 LLVPTGLHHIFYAIFIQLIAGGTVIGGGQVIPGDALANMAQGGAAlavFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGV 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 301 AKPERKAIAKAILIPAALTSLLVGVTEPIEFSFLFVAPLLFVVHAVLTGIGMMLFSLFGV 360
Cdd:TIGR00852 230 ALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
12-349 |
2.59e-47 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 166.75 E-value: 2.59e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 12 GKSLYGPVLILPIVGLFIAFGNVlgnGNLAEYLPFLGHPLIQSVGQLIAKSAVSVLVNLALVFAVGIPIGLATRDkGYAA 91
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNL---PNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGD-GVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 92 LIGLVTFIVFinamnvtLQLQGELAPAEQMKAAGQSMVLGVQVLEMGVFAGILTGALSGYLYNKYSGVQFN---GAMAIY 168
Cdd:pfam02378 77 AAGLIGLLSF-------NLAAAISVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIklpDSLPFF 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 169 SGHCFVAIVMLPVSMLL-GVVMSELWPYAQHGISALALAIKGSGP-FGVAIYGFLERILVPTGLHHLVYTPFLYTELGGT 246
Cdd:pfam02378 150 VGKRFVPIITGFVTLLViGPVLGLIWPAIQGGLNALGLLLIIAGGiLGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGS 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 247 QEVCGATYQGARNIYFAEMacpdvkqlsstvvwdarGISKMFGLPAAALAMYMTAKPERKAIAKAILIPAALTSLLVGVT 326
Cdd:pfam02378 230 NPIANQQAYGAGAAHILTG-----------------GFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGIT 292
|
330 340
....*....|....*....|...
gi 516289613 327 EPIEFSFLFVAPLLFVVHAVLTG 349
Cdd:pfam02378 293 EPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
389-514 |
6.98e-28 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 109.03 E-value: 6.98e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 389 IVVGLIMFALYFVVFRFLILRFNMKTPGRedEDQETRLYSKQEYQAKGNNDELGE---------SIVVGLGGRENIEVVD 459
Cdd:PRK09702 13 IAIGLCFTLLYFVVFRTLILQFNMCTPGR--EDAEVKLYSKAEYKASRGQTTAAEpkkeldqaaGILQALGGVGNISSIN 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 516289613 460 NCYTRLRVTVKDVA-IIDEPRLKATGAKGIIKQGNNVQVVYGLHVKKMREAVETFL 514
Cdd:PRK09702 91 NCATRLRIALHDMSqTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLI 146
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
439-511 |
5.94e-27 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 103.66 E-value: 5.94e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 516289613 439 DELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKATGAKGIIKQGNNVQVVYGLHVKKMREAVE 511
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVKNGGQVQVIIGPGVDKVADEIE 73
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
439-503 |
1.22e-21 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 88.74 E-value: 1.22e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516289613 439 DELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKAT-GAKGIIKQGNNVQVVYGLHV 503
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLgGVKGVVKNGGQYQVIIGPGV 66
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
408-500 |
4.76e-18 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 78.94 E-value: 4.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 408 LRFNMKTPGREDEDQETrlySKQEYQAKGNndELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKATGAKG 487
Cdd:TIGR00826 1 TRLRLKTPGREKADEEA---IAAGEGVKGV--FTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHG 75
|
90
....*....|...
gi 516289613 488 IIKQGNNVQVVYG 500
Cdd:TIGR00826 76 VNPLQRAVQVISG 88
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
443-471 |
2.71e-10 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 55.07 E-value: 2.71e-10
10 20
....*....|....*....|....*....
gi 516289613 443 ESIVVGLGGRENIEVVDNCYTRLRVTVKD 471
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKD 29
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
437-514 |
4.09e-09 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 58.65 E-value: 4.09e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 516289613 437 NNDELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKA-TGAKGIIKQGNNVQVVYGLHVKKMREAVETFL 514
Cdd:PRK09796 4 NYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTiPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
438-500 |
2.68e-06 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 49.68 E-value: 2.68e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 516289613 438 NDELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKA-TGAKGIIKQGNNVQVVYG 500
Cdd:PRK09586 5 SSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTiEGVKGVILSDDQVQVVLG 68
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
431-510 |
1.13e-05 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 48.17 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516289613 431 EYQAkgnndeLGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKAT-GAKGIIKQGNNVQVVYGLHVKKMREA 509
Cdd:PRK09824 2 EYTE------LAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNpGVIMVVESGGQFQVVIGNHVADVFLA 75
|
.
gi 516289613 510 V 510
Cdd:PRK09824 76 V 76
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
440-500 |
2.08e-03 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 40.40 E-value: 2.08e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516289613 440 ELGESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRL-KATGAKGIIKQGNNVQVVYG 500
Cdd:PRK14905 276 EIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIeKIDCVKGLFSIANQYQIILG 337
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
443-503 |
2.76e-03 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 40.05 E-value: 2.76e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516289613 443 ESIVVGLGGRENIEVVDNCYTRLRVTVKDVAIIDEPRLKATGA-KGIIKQGNNVQVVYGLHV 503
Cdd:PRK11007 11 DRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMvKGCFTNAGQFQVVIGTEV 72
|
|
| |
