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Conserved domains on  [gi|516291454|ref|WP_017694761|]
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MULTISPECIES: porin OmpA [Enterobacter]

Protein Classification

porin OmpA( domain architecture ID 11484960)

outer membrane protein A (OmpA) acts as a porin with low permeability that allows slow penetration of small solutes; OmpA is required for the action of colicins K and L and for the stabilization of mating aggregates in conjugation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10808 PRK10808
outer membrane protein A; Reviewed
 1-350 0e+00

outer membrane protein A; Reviewed


:

Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 712.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454   1 MKKTAIAIAVALAGFATVAQAAPKDNTWYAGGKLGWSQFHDTGWynSSLNNDGPTHESQLGAGAFGGYQVNPYVGFEMGY 80
Cdd:PRK10808   1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGGKLGWSQYHDTGY--GFINNNGPTHKNQLGAGAFGGYQANPYLGFEMGY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  81 DWLGRMPYKGDNVNGAFKAQGVQLTAKLGYPVTDDLDVYTRLGGMVWRADSSNSIAGD---DHDTGVSPVFAGGVEWAMT 157
Cdd:PRK10808  79 DWLGRMPYKGDVNNGAFKAQGVQLTAKLGYPITDDLDVYTRLGGMVWRADTKSNVPGArgkDHDTGVSPVFAGGVEYAIT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 158 RDIATRLEYQWVNNIGDGATVGVRPDNGMLSVGVSYRFGQQEDAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPE 237
Cdd:PRK10808 159 KNWATRLEYQWTNNIGDADTVGARPDNGMLSVGVSYRFGQEEAAPVVAPAPAPAPVVQTKHFTLKSDVLFNFNKATLKPE 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 238 GQQALDQLYTQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPANKISPRGMGESNPVTGSTCDN 317
Cdd:PRK10808 239 GQQALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNTCDN 318

                        330       340       350
                 ....*....|....*....|....*....|...
gi 516291454 318 VKPRAALIDCLAPDRRVEIEVKGIKDVVTQPAA 350
Cdd:PRK10808 319 VKPRAALIDCLAPDRRVEIEVKGIKDVVTQPQA 351
 
Name Accession Description Interval E-value
PRK10808 PRK10808
outer membrane protein A; Reviewed
 1-350 0e+00

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 712.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454   1 MKKTAIAIAVALAGFATVAQAAPKDNTWYAGGKLGWSQFHDTGWynSSLNNDGPTHESQLGAGAFGGYQVNPYVGFEMGY 80
Cdd:PRK10808   1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGGKLGWSQYHDTGY--GFINNNGPTHKNQLGAGAFGGYQANPYLGFEMGY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  81 DWLGRMPYKGDNVNGAFKAQGVQLTAKLGYPVTDDLDVYTRLGGMVWRADSSNSIAGD---DHDTGVSPVFAGGVEWAMT 157
Cdd:PRK10808  79 DWLGRMPYKGDVNNGAFKAQGVQLTAKLGYPITDDLDVYTRLGGMVWRADTKSNVPGArgkDHDTGVSPVFAGGVEYAIT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 158 RDIATRLEYQWVNNIGDGATVGVRPDNGMLSVGVSYRFGQQEDAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPE 237
Cdd:PRK10808 159 KNWATRLEYQWTNNIGDADTVGARPDNGMLSVGVSYRFGQEEAAPVVAPAPAPAPVVQTKHFTLKSDVLFNFNKATLKPE 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 238 GQQALDQLYTQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPANKISPRGMGESNPVTGSTCDN 317
Cdd:PRK10808 239 GQQALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNTCDN 318

                        330       340       350
                 ....*....|....*....|....*....|...
gi 516291454 318 VKPRAALIDCLAPDRRVEIEVKGIKDVVTQPAA 350
Cdd:PRK10808 319 VKPRAALIDCLAPDRRVEIEVKGIKDVVTQPQA 351
OmpA_membrane pfam01389
OmpA-like transmembrane domain; The structure of OmpA transmembrane domain shows that it ...
 23-199 8.37e-90

OmpA-like transmembrane domain; The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.


Pssm-ID: 396112  Cd Length: 177  Bit Score: 267.00  E-value: 8.37e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454   23 PKDNTWYAGGKLGWSQFHDTGwynsSLNNDGPTHESQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGDNVNGAFKAQGV 102
Cdd:pfam01389   1 PAANTWYTGAKAGWASFHDTG----NIEGNGPTHENSLTAGAFGGYQINNYLAAELGYDYLGRMPYKGKGKNNAHKAQGV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  103 QLTAKLGYPVTDDLDVYTRLGGMVWRADSS----NSIAGDDHDTGVSPVFAGGVEWAMTRDIATRLEYQWVNNIGDGATV 178
Cdd:pfam01389  77 TLSLKLSYPLTDDLDVYGKVGGALVRADYKfyedANGKTGNHDTGVSPLFALGVEYAITPELAVRLEYQYLNNIGDLHKQ 156

                         170       180
                  ....*....|....*....|.
gi 516291454  179 GVRPDNGMLSVGVSYRFGQQE 199
Cdd:pfam01389 157 GKRPDNGSASLGISYRFGQGE 177
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 224-338 2.67e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 129.60  E-value: 2.67e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 224 DVLFNFNKATLKPEGQQALDQLYTQLSNLDpkDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPANKISPRG 303
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNP--DAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 516291454 304 MGESNPVTgstcDNvkpraALIDCLAPDRRVEIEV 338
Cdd:cd07185   81 YGESRPIA----SN-----DTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 50-340 3.28e-37

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 135.68  E-value: 3.28e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  50 NNDGPTHESQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGDNVNGAFKAQGVQLTAKLGYPVTDDLDVYTRLGGMVWRA 129
Cdd:COG2885    9 SALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 130 DSSNSIAGDDHDTGVSPVFAGGVEWAMTRDIATRLEYQWVNNIGDGATVGVRPDNGMLSVGVS-----YRFGQQEDAPVV 204
Cdd:COG2885   89 LLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKAlgdsaAAALDAAAKAEA 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 205 APAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQQALDQLYTQLSNLdpKDGSVVVLGFTDRIGSDAYNQGLSEKRAQS 284
Cdd:COG2885  169 AAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEN--PDLRIEIEGHTDSRGSDAYNLALSERRAEA 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 516291454 285 VVDYLVSKGIPANKISPRGMGESNPVTgsTCDNVKPRAAlidclapDRRVEIEVKG 340
Cdd:COG2885  247 VKDYLVSKGIPASRITAVGYGESRPVA--SNDTEEGRAK-------NRRVEIVVLK 293
 
Name Accession Description Interval E-value
PRK10808 PRK10808
outer membrane protein A; Reviewed
 1-350 0e+00

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 712.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454   1 MKKTAIAIAVALAGFATVAQAAPKDNTWYAGGKLGWSQFHDTGWynSSLNNDGPTHESQLGAGAFGGYQVNPYVGFEMGY 80
Cdd:PRK10808   1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGGKLGWSQYHDTGY--GFINNNGPTHKNQLGAGAFGGYQANPYLGFEMGY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  81 DWLGRMPYKGDNVNGAFKAQGVQLTAKLGYPVTDDLDVYTRLGGMVWRADSSNSIAGD---DHDTGVSPVFAGGVEWAMT 157
Cdd:PRK10808  79 DWLGRMPYKGDVNNGAFKAQGVQLTAKLGYPITDDLDVYTRLGGMVWRADTKSNVPGArgkDHDTGVSPVFAGGVEYAIT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 158 RDIATRLEYQWVNNIGDGATVGVRPDNGMLSVGVSYRFGQQEDAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPE 237
Cdd:PRK10808 159 KNWATRLEYQWTNNIGDADTVGARPDNGMLSVGVSYRFGQEEAAPVVAPAPAPAPVVQTKHFTLKSDVLFNFNKATLKPE 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 238 GQQALDQLYTQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPANKISPRGMGESNPVTGSTCDN 317
Cdd:PRK10808 239 GQQALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNTCDN 318

                        330       340       350
                 ....*....|....*....|....*....|...
gi 516291454 318 VKPRAALIDCLAPDRRVEIEVKGIKDVVTQPAA 350
Cdd:PRK10808 319 VKPRAALIDCLAPDRRVEIEVKGIKDVVTQPQA 351
OmpA_membrane pfam01389
OmpA-like transmembrane domain; The structure of OmpA transmembrane domain shows that it ...
 23-199 8.37e-90

OmpA-like transmembrane domain; The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.


Pssm-ID: 396112  Cd Length: 177  Bit Score: 267.00  E-value: 8.37e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454   23 PKDNTWYAGGKLGWSQFHDTGwynsSLNNDGPTHESQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGDNVNGAFKAQGV 102
Cdd:pfam01389   1 PAANTWYTGAKAGWASFHDTG----NIEGNGPTHENSLTAGAFGGYQINNYLAAELGYDYLGRMPYKGKGKNNAHKAQGV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  103 QLTAKLGYPVTDDLDVYTRLGGMVWRADSS----NSIAGDDHDTGVSPVFAGGVEWAMTRDIATRLEYQWVNNIGDGATV 178
Cdd:pfam01389  77 TLSLKLSYPLTDDLDVYGKVGGALVRADYKfyedANGKTGNHDTGVSPLFALGVEYAITPELAVRLEYQYLNNIGDLHKQ 156

                         170       180
                  ....*....|....*....|.
gi 516291454  179 GVRPDNGMLSVGVSYRFGQQE 199
Cdd:pfam01389 157 GKRPDNGSASLGISYRFGQGE 177
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 224-338 2.67e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 129.60  E-value: 2.67e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 224 DVLFNFNKATLKPEGQQALDQLYTQLSNLDpkDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPANKISPRG 303
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNP--DAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 516291454 304 MGESNPVTgstcDNvkpraALIDCLAPDRRVEIEV 338
Cdd:cd07185   81 YGESRPIA----SN-----DTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 50-340 3.28e-37

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 135.68  E-value: 3.28e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  50 NNDGPTHESQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGDNVNGAFKAQGVQLTAKLGYPVTDDLDVYTRLGGMVWRA 129
Cdd:COG2885    9 SALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 130 DSSNSIAGDDHDTGVSPVFAGGVEWAMTRDIATRLEYQWVNNIGDGATVGVRPDNGMLSVGVS-----YRFGQQEDAPVV 204
Cdd:COG2885   89 LLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKAlgdsaAAALDAAAKAEA 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 205 APAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQQALDQLYTQLSNLdpKDGSVVVLGFTDRIGSDAYNQGLSEKRAQS 284
Cdd:COG2885  169 AAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEN--PDLRIEIEGHTDSRGSDAYNLALSERRAEA 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 516291454 285 VVDYLVSKGIPANKISPRGMGESNPVTgsTCDNVKPRAAlidclapDRRVEIEVKG 340
Cdd:COG2885  247 VKDYLVSKGIPASRITAVGYGESRPVA--SNDTEEGRAK-------NRRVEIVVLK 293
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 227-321 1.35e-25

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 98.59  E-value: 1.35e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  227 FNFNKATLKPEGQQALDQLYTQLSNLDPKDgSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPANKISPRGMGE 306
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKN-TITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGA 79

                          90
                  ....*....|....*
gi 516291454  307 SNPVTGSTCDNVKPR 321
Cdd:pfam00691  80 TKPITDNKTPEGRAR 94
MotB COG1360
Flagellar motor protein MotB [Cell motility];
219-336 3.33e-20

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 86.44  E-value: 3.33e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 219 FTLKSDVLFNFNKATLKPEGQQALDQLYTQLSNLDpkdGSVVVLGFTDR--IGSDAY--NQGLSEKRAQSVVDYLVSKGI 294
Cdd:COG1360   55 IEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP---NRIRVEGHTDNvpISTARFpsNWELSAARAAAVVRYLIEGGV 131

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 516291454 295 PANKISPRGMGESNPVTgstcDNVKPRAAlidclAPDRRVEI 336
Cdd:COG1360  132 PPERLSAVGYGDTRPLA----PNDTPEGR-----ARNRRVEI 164
OMP_b-brl pfam13505
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 7-195 3.34e-20

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 463903 [Multi-domain]  Cd Length: 175  Bit Score: 86.30  E-value: 3.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454    7 AIAVALAGFATVAQAAPKDNTWYAGGKLGWSqfhdtgwynsSLNNDGPTHESQLGAGAFGGYQVNPYVGFEMGYDWLGRM 86
Cdd:pfam13505   1 AALLLLAAFSAAAAAAEEFGGFYVGGGLGNA----------NFSFDGDGTDSGGGFGVGAGYDFNDYLGVEGELGYGSDD 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454   87 PYKGDNVNGA-FKAQGVQLTAKLGYPVTDDLDVYTRlGGMVWRADSSNSIAGDDHDTGVSPVFAGGVEWAMTRDIATRLE 165
Cdd:pfam13505  71 DYSGGGNTDAnIRSLSIGVNLGYRFPLSDSLLPYGG-AGYGYSKLEGDYNGVSDSGTDFGFGYGAGVEYALTDHLAVRAE 149

                         170       180       190
                  ....*....|....*....|....*....|
gi 516291454  166 YqwvnNIGDGATVGVRPDNGMLSVGVSYRF 195
Cdd:pfam13505 150 Y----RYTDIKSGGDDLKNNTFQLGVGYRF 175
LomR COG3637
Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];
60-195 1.34e-15

Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442854 [Multi-domain]  Cd Length: 154  Bit Score: 73.08  E-value: 1.34e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454  60 LGAGAFGGYQV---NPYVGFEMGYDWLGrmpYKGDN--VNGAFKAQGVQLTAKLGYPVTDDLDVYTRLGGMV----WRAD 130
Cdd:COG3637    9 LAAGVQAGYNFqfdNFVLGVEGDYSYSD---IDGDSsgTTGSGDLDYLSLRARAGYDFNDRFLPYATAGVAYarvkVTGN 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 516291454 131 SSNSIAGDDHDTGVSPVFAGGVEWAMTRDIATRLEYQWVN----NIGDGATVGVRPDNGMLSVGVSYRF 195
Cdd:COG3637   86 TGSGTSGSDSDTRFGWTVGAGVEYALTDNWSLRLEYRYTDlgdaDFDGGGSVDVDLDSHTVRVGLNYRF 154
PRK09039 PRK09039
peptidoglycan -binding protein;
219-336 1.18e-14

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 73.85  E-value: 1.18e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 219 FTLKSDVLFNFNKATLKPEGQQALDQLYTQLSNLD---PKDGSVV--VLGFTDRI---GSDAY--NQGLSEKRAQSVVDY 288
Cdd:PRK09039 220 FVFQSEVLFPTGSAELNPEGQAEIAKLAAALIELAkeiPPEINWVlrVDGHTDNVplsGTGRFrdNWELSSARAISVVKF 299

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 516291454 289 LVSKGIPANKISPRGMGESNPV-TGSTcdnvkPRAalidcLAPDRRVEI 336
Cdd:PRK09039 300 LIALGVPADRLAAAGFGEFQPLdPGDT-----PEA-----RARNRRIEL 338
PRK10510 PRK10510
OmpA family lipoprotein;
223-336 2.15e-13

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 68.36  E-value: 2.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 223 SDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKdgSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPANKISPR 302
Cdd:PRK10510 112 NNVTFDSSSATLKPAGANTLTGVAMVLKEYPKT--AVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQ 189

                         90       100       110
                 ....*....|....*....|....*....|....
gi 516291454 303 GMGESNPVTGSTCDNVKpraalidclAPDRRVEI 336
Cdd:PRK10510 190 GMGPANPIASNSTAEGK---------AQNRRVEI 214
PRK08126 PRK08126
hypothetical protein; Provisional
 220-338 2.04e-11

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 64.71  E-value: 2.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 220 TLKSDVLFNFNKATLKPEGQQALDQLYTQLSNLDpkdGSVVVLGFTD----RIGSDAYNQGLSEKRAQSVVDYLVSKGIP 295
Cdd:PRK08126 320 VFRGDAMFVPGQATVNPAMGPLIAKIAREIARVG---GKVTVTGHTDnqpiRSAQFASNLVLSEKRAAQVAQMLQSAGVP 396

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 516291454 296 ANKISPRGMGESNPVTgstcDNVKPRAAlidclAPDRRVEIEV 338
Cdd:PRK08126 397 ASRLEAVGKGDAQPVA----DNRTPQGR-----AQNRRVEITV 430
PRK09967 PRK09967
OmpA family protein;
221-336 1.36e-10

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 59.22  E-value: 1.36e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 221 LKSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVvlGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKG-IPANKI 299
Cdd:PRK09967  50 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMD--GHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNL 127

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 516291454 300 SPRGMGESNPVtgSTCDNVKPRAAlidclapDRRVEI 336
Cdd:PRK09967 128 TTQGLGKKYPI--ASNKTAQGRAE-------NRRVAV 155
PRK09040 PRK09040
hypothetical protein; Provisional
 225-336 1.55e-09

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 57.33  E-value: 1.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 225 VLFNFNKATLKPEGQQALDQLYTQLSN-LDPKDGSVVVLGFTD----RIGSDAY--NQGLSEKRAQSVVDYLVSKGIPAN 297
Cdd:PRK09040  90 VLFALNSDQLQPEGRELLKSLAGPLAAyLRARDEILMVSGFTDdqpvRAGNRRFadNWELSAQRALTVTRALIDAGVPAS 169

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 516291454 298 KISPRGMGESNPVtgSTCDNVKPRAAlidclapDRRVEI 336
Cdd:PRK09040 170 SVFAAAFGSEQPV--ASNADDEGRAK-------NRRVEI 199
PRK07033 PRK07033
DotU family type VI secretion system protein;
220-338 1.24e-07

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 53.13  E-value: 1.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 220 TLKSDVLFNFNKATLKPEGQQALDQLYTQLSNLDpkdGSVVVLGFTD----RIGSDAYNQGLSEKRAQSVVDYLVSKGIP 295
Cdd:PRK07033 311 TLRGDGLFASASTSVRDRYQPVLARVADALNQVK---GNVLVTGYSDnvpiRTARFPSNWELSQARAQAVRALLAARLGQ 387

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 516291454 296 ANKISPRGMGESNPVtgSTCDNVKPRAAlidclapDRRVEIEV 338
Cdd:PRK07033 388 PERVTAEGRGDSDPV--APNDSAENRAR-------NRRVEITL 421
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 221-336 3.51e-07

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 50.78  E-value: 3.51e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 221 LKSDVLFNFNKATLKPEGQQALDQLYTQLSNLDpkdGSVVVLGFTDR--IGSDAY--NQGLSEKRAQSVVDYLVSKGIPA 296
Cdd:PRK09038 131 INSSLLFGSGDAMLSDQAFAILEKVAEVLKPAP---NPIHVEGFTDNvpIATAQFpsNWELSAARAASVVRLLADDGVAP 207

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 516291454 297 NKISPRGMGESNPVTGStcDNVKPRAAlidclapDRRVEI 336
Cdd:PRK09038 208 SRLAAVGYGEFQPVADN--DTAEGRAR-------NRRVVL 238
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
225-309 2.14e-06

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 47.17  E-value: 2.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 225 VLFNFNKATLKPEGQQALDQLYTQL-SNLDPKdgsVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPANKISPRG 303
Cdd:PRK10802  71 VYFDLDKYDIRSDFAQMLDAHANFLrSNPSYK---VTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVS 147


                 ....*.
gi 516291454 304 MGESNP 309
Cdd:PRK10802 148 YGKEKP 153
motB PRK08457
flagellar motor protein MotB; Reviewed
 254-347 2.49e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 48.17  E-value: 2.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 254 PKDGSVVVLGFTD---RIGS---DAYNqgLSEKRAQSVVDYLVSKGIPANKISPRGMGESNPVTGstcdNVKPRAALIdc 327
Cdd:PRK08457 153 PKQVKINVRGYTDnspLNKSrykDHYE--LAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAP----NDSLENRLK-- 224

                         90       100
                 ....*....|....*....|.
gi 516291454 328 lapDRRVEIEVK-GIKDVVTQ 347
Cdd:PRK08457 225 ---NNRVEIFFKvDANDTSTQ 242
PRK14693 PRK14693
hypothetical protein; Provisional
 219-349 6.93e-06

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 47.84  E-value: 6.93e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516291454 219 FTLKSDVLFNFNKATLKPEGQQALDQLYTQLSnldPKDGSVVVLGFTD----RIGSDAYNQGLSEKRAQSVVDYLVSKGI 294
Cdd:PRK14693 368 LVFKSDGAFDVGKANVRADFMHNIERLGLAFA---PWPGDLEVIGHTDsrpiRTSEFPDNQALSEARARNVADELRKTAL 444

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516291454 295 PANKISPR----------GMGESNPVtgstcDNVKPRAAlidcLAPDRRVEIEVKGIKDVVTQPA 349
Cdd:PRK14693 445 PGGARAPEnavqrnieysGRGDAQPI-----DTAKTAAA----YERNRRVDVLWKVIPDGAQQSG 500
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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