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Conserved domains on  [gi|516406351|ref|WP_017795749|]
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pentapeptide repeat-containing protein [Oceanobacillus kimchii]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
24-210 1.86e-33

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 118.12  E-value: 1.86e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  24 EDPEFEMCMVTDSEFVDEVLDRVRLYKTMiRNCNFTNTDFSRIDLTDVCFENCDLSNANLSNASMNRVEFLNCKLLGSNL 103
Cdd:COG1357    3 SGADLSGADLSGADLSGADLSGANLSGAL-SGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351 104 TDSYIgnAIFRESILNMGMFGNSKLEKVIFDNTELESADLFDCKLKKVEFLSCNLNGANFEETSLKGIDISTSDFNFLtv 183
Cdd:COG1357   82 SGANL--ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGA-- 157

                        170       180
                 ....*....|....*....|....*..
gi 516406351 184 tmeNLKGCIVSSSqaiQFASLLGLKIK 210
Cdd:COG1357  158 ---NLSGANLSGA---NLANLEGADLK 178
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
24-210 1.86e-33

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 118.12  E-value: 1.86e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  24 EDPEFEMCMVTDSEFVDEVLDRVRLYKTMiRNCNFTNTDFSRIDLTDVCFENCDLSNANLSNASMNRVEFLNCKLLGSNL 103
Cdd:COG1357    3 SGADLSGADLSGADLSGADLSGANLSGAL-SGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351 104 TDSYIgnAIFRESILNMGMFGNSKLEKVIFDNTELESADLFDCKLKKVEFLSCNLNGANFEETSLKGIDISTSDFNFLtv 183
Cdd:COG1357   82 SGANL--ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGA-- 157

                        170       180
                 ....*....|....*....|....*..
gi 516406351 184 tmeNLKGCIVSSSqaiQFASLLGLKIK 210
Cdd:COG1357  158 ---NLSGANLSGA---NLANLEGADLK 178
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
66-143 1.40e-08

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 49.97  E-value: 1.40e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516406351   66 IDLTDVCFENCDLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFRESILNMGMFGNSKLEKVIFDNTELESADL 143
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
PRK15196 PRK15196
type III secretion system effector PipB2;
35-168 1.32e-06

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 47.69  E-value: 1.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  35 DSEFVDEVLDRVRLYKTMIRNCNFTNTDFSRIDLTdvcfeNCDLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFR 114
Cdd:PRK15196 206 DSNFKNACLEDSIMCGATLDHANLTGANLQHASLL-----GCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIM 280

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 516406351 115 ESILNMGMFGNSKLEKVIFDNTELESADLFDCKLKKVEFLSCNLNGANFEETSL 168
Cdd:PRK15196 281 AAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTHLRTEDATM 334
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
24-210 1.86e-33

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 118.12  E-value: 1.86e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  24 EDPEFEMCMVTDSEFVDEVLDRVRLYKTMiRNCNFTNTDFSRIDLTDVCFENCDLSNANLSNASMNRVEFLNCKLLGSNL 103
Cdd:COG1357    3 SGADLSGADLSGADLSGADLSGANLSGAL-SGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351 104 TDSYIgnAIFRESILNMGMFGNSKLEKVIFDNTELESADLFDCKLKKVEFLSCNLNGANFEETSLKGIDISTSDFNFLtv 183
Cdd:COG1357   82 SGANL--ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGA-- 157

                        170       180
                 ....*....|....*....|....*..
gi 516406351 184 tmeNLKGCIVSSSqaiQFASLLGLKIK 210
Cdd:COG1357  158 ---NLSGANLSGA---NLANLEGADLK 178
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
66-143 1.40e-08

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 49.97  E-value: 1.40e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516406351   66 IDLTDVCFENCDLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFRESILNMGMFGNSKLEKVIFDNTELESADL 143
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
86-172 7.36e-08

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 48.04  E-value: 7.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351   86 ASMNRVEFLNCKLLGSNLTDSYIGNAIFRESILNMgmfgnsklekVIFDNTELESADLFDCKLKKVEFLSCNLNGANFEE 165
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVN----------VNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSD 70


                  ....*..
gi 516406351  166 TSLKGID 172
Cdd:pfam13599  71 VKLKGAD 77
PRK15196 PRK15196
type III secretion system effector PipB2;
35-168 1.32e-06

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 47.69  E-value: 1.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  35 DSEFVDEVLDRVRLYKTMIRNCNFTNTDFSRIDLTdvcfeNCDLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFR 114
Cdd:PRK15196 206 DSNFKNACLEDSIMCGATLDHANLTGANLQHASLL-----GCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIM 280

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 516406351 115 ESILNMGMFGNSKLEKVIFDNTELESADLFDCKLKKVEFLSCNLNGANFEETSL 168
Cdd:PRK15196 281 AAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTHLRTEDATM 334
PRK15196 PRK15196
type III secretion system effector PipB2;
54-173 3.65e-06

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 46.54  E-value: 3.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  54 RNCNFTNTDFSRIDLTDVCFEN-----CDLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFRESILNMGMFGNSKL 128
Cdd:PRK15196 195 KGANLSGTSLGDSNFKNACLEDsimcgATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATL 274

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 516406351 129 EKVIFDNTELESADLFDCKLKKVEFLSCNLNGANFEETSLKGIDI 173
Cdd:PRK15196 275 QGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCF 319
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
73-153 9.26e-06

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 42.26  E-value: 9.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351   73 FENCDLSNANLSNasmnrVEFLNCKLLGSNLTDSYIGNAIFRESILNMGMFGNSKLEKVIFDNTELESADLFDCKLKKVE 152
Cdd:pfam13599   3 FTRCSFEGCKLSG-----TEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGAD 77


                  .
gi 516406351  153 F 153
Cdd:pfam13599  78 F 78
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 56-93 1.07e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.17  E-value: 1.07e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 516406351   56 CNFTNTDFSRIDLTDVCFENCDLSNANLSNASMNRVEF 93
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANL 38
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
55-114 1.99e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 41.49  E-value: 1.99e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351   55 NCNFTNTDFSRIDLTDVCFENCDLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFR 114
Cdd:pfam13599  10 GCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFS 69
PRK15196 PRK15196
type III secretion system effector PipB2;
77-205 2.38e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 44.23  E-value: 2.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  77 DLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFRESILNMGMFGNSKLEKVIFDNTELESADLFDCKLkkvefLSC 156
Cdd:PRK15196 173 DLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSM-----IEC 247

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 516406351 157 NLNGANFEETSLKG-----IDISTSDFNFLTVTMENLKGCIVSSSQaIQFASLL 205
Cdd:PRK15196 248 NCSGANMDHTNLSGatlirADMSGATLQGATIMAAIMEGAVLTRAN-LRKASFI 300
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
36-113 3.06e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 40.72  E-value: 3.06e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516406351   36 SEFVDEVLDRVRLYKTMIRNCNFTNTDFSRIDLTDVCFENCDLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIF 113
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 54-85 4.39e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 39.25  E-value: 4.39e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 516406351   54 RNCNFTNTDFSRIDLTDVCFENCDLSNANLSN 85
Cdd:pfam00805   9 SGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK09718 PRK09718
SopA family protein;
61-178 1.79e-04

SopA family protein;


Pssm-ID: 182045 [Multi-domain]  Cd Length: 512  Bit Score: 41.57  E-value: 1.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  61 TDFSRIDLTDVCFENCDLSNANLSNASMNRVEFlNCKLLGS-NLTDSYIGNAIFRESILNMGMFGNSKLEKVIFDNTELE 139
Cdd:PRK09718  90 IDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTF-ECKEIGDcNFTTAIVDNVIFKCRRLHNVIFIKASGEYVDFSKNILD 168

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 516406351 140 SADLFDCKLKKVEFLSCNLNGANFEETSLKGIDISTSDF 178
Cdd:PRK09718 169 TVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEF 207
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 76-114 1.95e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 37.70  E-value: 1.95e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 516406351   76 CDLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFR 114
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 54-90 2.20e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 37.32  E-value: 2.20e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 516406351   54 RNCNFTNTDFSRIDLTDVCFENCDLSNANLSNASMNR 90
Cdd:pfam00805   4 SGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
73-149 7.75e-04

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 40.05  E-value: 7.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  73 FENCDLSNANLSNASMNRVEFLNC------KLLGSNLTDSYIGNAIFRESILNMGMFGNSKLEKVIFDNTELESADLFDC 146
Cdd:PRK15377 192 YADRDFSNADFRNINFSKINPSGFmlrdgdIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEA 271


                 ...
gi 516406351 147 KLK 149
Cdd:PRK15377 272 SLK 274
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
123-191 1.76e-03

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 36.10  E-value: 1.76e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 516406351  123 FGNSKLEKVIFDNTELESADLFDCKLKKVEFLSCNLNGANFEETSLKGIDISTSDFNFLTVTMENLKGC 191
Cdd:pfam13599   8 FEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGA 76
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 61-98 1.79e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 35.01  E-value: 1.79e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 516406351   61 TDFSRIDLTDVCFENCDLSNANLSNASMNRVEFLNCKL 98
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANL 38
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
55-141 2.25e-03

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 38.51  E-value: 2.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516406351  55 NCNFTNTDFSRIDLTDVCFENC-----------DLSNANLSNASMNRVEFLNCKLLGSNLTDSYIGNAIFRESILNMGMF 123
Cdd:PRK15377 194 DRDFSNADFRNINFSKINPSGFmlrdgdiikgfNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEASL 273

                         90       100
                 ....*....|....*....|
gi 516406351 124 GNSKL--EKVIFDNTELESA 141
Cdd:PRK15377 274 KYSITtqQQPSFIETTLKNT 293
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 136-174 8.85e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 33.08  E-value: 8.85e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 516406351  136 TELESADLFDCKLKKVEFLSCNLNGANFEETSLKGIDIS 174
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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