View
Concise Results
Standard Results
Full Results
MULTISPECIES: single-stranded-DNA-specific exonuclease RecJ [Oceanobacillus]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
3-538
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 729.20
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 3 ESKMK W RYNQIEDHK - SS L LENTDQ SPL MKQ L FIQ RG L TT N EE VQR FL S P QIE DLH Q PFLLKDM E KAV Q R VHK AI Q N E EK 81
Cdd:COG0608 2 STGRR W ILKPPDPEL v EA L AKELGL SPL LAR L LAN RG I TT P EE AEA FL D P SLK DLH D PFLLKDM D KAV E R LAE AI E N G EK 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 82 IL VF GDYD A DG VS ST VVMLKA L TE LGA KC D F YIPNRF T EGYG P N ET A FRT A S EQG YNV IITVD T GI T S VH E ADI A N ELG M 161
Cdd:COG0608 82 IL IY GDYD V DG AT ST ALLVRF L RA LGA NV D Y YIPNRF E EGYG L N PE A VER A A EQG VDL IITVD C GI S S HE E VAY A K ELG I 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 162 D L I I TDHH E P QTNI P ECF AI IH PK CSP - DYPFKELAGVGVA L K F A E A ILGYF ------- PVQ LL SYA A I GT I AD L VPL FD 233
Cdd:COG0608 162 D V I V TDHH L P GEEL P PAD AI VN PK RPD c DYPFKELAGVGVA F K L A Q A LRREL rerpepd LAE LL DLV A L GT V AD V VPL TG 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 234 ENR VIAYY GL EE LR T T TDV GL K AL IQ V CQ L ED -- LDEQS IGF SI GPR L NA V GRL Q DA D L A VELLL ME D M E S A I E I A N E IN 311
Cdd:COG0608 242 ENR ILVKQ GL KR LR A T KRP GL R AL LE V AG L DP ke ITAED IGF AL GPR I NA A GRL G DA S L G VELLL TD D E E E A R E L A E E LD 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 312 KI N D ERK KVVQR I VS EA DQIVKSK P E --- RRII V VSN E G W NQ GV L GIVAS H L VR KY D RP A IVL STQPE l G VV KGSARSIP 388
Cdd:COG0608 322 EL N R ERK EIEAE I TE EA LAQIEEL P D led PKVL V LYD E D W HP GV I GIVAS R L KE KY H RP T IVL AIDED - G IA KGSARSIP 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 389 A FDL FEGCMRMR DL FTH FGGH SQ AAG M TL PI EN VDKLEFQLDNILNNE LAEEDL KQE LEI S G Q L S L EHI TLEL IRDISK L 468
Cdd:COG0608 401 G FDL YDALDACS DL LLK FGGH AM AAG L TL KE EN LEAFRERFNEVVAEQ LAEEDL EPV LEI D G E L P L SEL TLEL AEELEQ L 480
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516407741 469 A PFG MK NP K PVF QIKEIP - ADIKRI G SQK NHLK MQF R TSST R M DAI G F GW GD VYNQI - APQTPIK IA GE L S I 538
Cdd:COG0608 481 E PFG QG NP E PVF LGRNVR v VSQRIV G KDG NHLK LTL R DGGR R L DAI A F NA GD KLEEL p NAGKRVD IA YT L D I 552
ssDNA-exonuc_C
pfam10141 Single-strand DNA-specific exonuclease, C terminal domain; Members of this set of prokaryotic ...
560-753
4.50e-65
Single-strand DNA-specific exonuclease, C terminal domain; Members of this set of prokaryotic domains are found in a set of single-strand DNA-specific exonucleases, including RecJ. Their exact function has not, as yet, been determined.
Pssm-ID: 431083
Cd Length: 202
Bit Score: 215.19
E-value: 4.50e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 560 QLFD F RGKR - R E NII P HF E EDAIIVSNQ T KNMV - S E VSQV S YNKDI I SDYNKC ------ QT V YIDE LP KH L DD L KYVINY 631
Cdd:pfam10141 1 QLFD Y RGKR l N E KKL P KE E RVYVFFHEK T LEQL q L E IPSD S QVYWL I DADEET aeafdy GY V VLLD LP DS L EQ L EELLEK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 632 F QP KK I VACYEV E S S N Y LFAF P S RE D F V W F Y ALI KKQ GP F HMHTYLDS L R KH K GW NDDKIN FM SE VF SD LGFV K IE N G K I 711
Cdd:pfam10141 81 K QP ER I YLLFYQ E E S A Y FEGM P T RE Q F K W L Y KFL KKQ PE F DLKKHGKA L A KH L GW SEETLI FM IK VF FE LGFV T IE D G V I 160
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 516407741 712 TALD NP L K K DL S ES TV YQ S R EQ Q S E I EK Q L Y YS N Y ED L RK W F 753
Cdd:pfam10141 161 SLVE NP E K R DL T ES PT YQ A R LE Q I E L EK K L L YS S Y DE L KS W L 202
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
3-538
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 729.20
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 3 ESKMK W RYNQIEDHK - SS L LENTDQ SPL MKQ L FIQ RG L TT N EE VQR FL S P QIE DLH Q PFLLKDM E KAV Q R VHK AI Q N E EK 81
Cdd:COG0608 2 STGRR W ILKPPDPEL v EA L AKELGL SPL LAR L LAN RG I TT P EE AEA FL D P SLK DLH D PFLLKDM D KAV E R LAE AI E N G EK 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 82 IL VF GDYD A DG VS ST VVMLKA L TE LGA KC D F YIPNRF T EGYG P N ET A FRT A S EQG YNV IITVD T GI T S VH E ADI A N ELG M 161
Cdd:COG0608 82 IL IY GDYD V DG AT ST ALLVRF L RA LGA NV D Y YIPNRF E EGYG L N PE A VER A A EQG VDL IITVD C GI S S HE E VAY A K ELG I 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 162 D L I I TDHH E P QTNI P ECF AI IH PK CSP - DYPFKELAGVGVA L K F A E A ILGYF ------- PVQ LL SYA A I GT I AD L VPL FD 233
Cdd:COG0608 162 D V I V TDHH L P GEEL P PAD AI VN PK RPD c DYPFKELAGVGVA F K L A Q A LRREL rerpepd LAE LL DLV A L GT V AD V VPL TG 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 234 ENR VIAYY GL EE LR T T TDV GL K AL IQ V CQ L ED -- LDEQS IGF SI GPR L NA V GRL Q DA D L A VELLL ME D M E S A I E I A N E IN 311
Cdd:COG0608 242 ENR ILVKQ GL KR LR A T KRP GL R AL LE V AG L DP ke ITAED IGF AL GPR I NA A GRL G DA S L G VELLL TD D E E E A R E L A E E LD 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 312 KI N D ERK KVVQR I VS EA DQIVKSK P E --- RRII V VSN E G W NQ GV L GIVAS H L VR KY D RP A IVL STQPE l G VV KGSARSIP 388
Cdd:COG0608 322 EL N R ERK EIEAE I TE EA LAQIEEL P D led PKVL V LYD E D W HP GV I GIVAS R L KE KY H RP T IVL AIDED - G IA KGSARSIP 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 389 A FDL FEGCMRMR DL FTH FGGH SQ AAG M TL PI EN VDKLEFQLDNILNNE LAEEDL KQE LEI S G Q L S L EHI TLEL IRDISK L 468
Cdd:COG0608 401 G FDL YDALDACS DL LLK FGGH AM AAG L TL KE EN LEAFRERFNEVVAEQ LAEEDL EPV LEI D G E L P L SEL TLEL AEELEQ L 480
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516407741 469 A PFG MK NP K PVF QIKEIP - ADIKRI G SQK NHLK MQF R TSST R M DAI G F GW GD VYNQI - APQTPIK IA GE L S I 538
Cdd:COG0608 481 E PFG QG NP E PVF LGRNVR v VSQRIV G KDG NHLK LTL R DGGR R L DAI A F NA GD KLEEL p NAGKRVD IA YT L D I 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
27-553
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 585.04
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 27 S P LMK Q LFIQ RG L T TN EE VQR FL S P QIE DL HQ PFLL K DMEKAV Q R VHK A IQ N E EKIL VF GDYD A DG VS ST VVMLKA L TE L 106
Cdd:TIGR00644 2 G P ILA Q ILAS RG I T DA EE LEN FL N P KLK DL PP PFLL L DMEKAV E R LIE A VE N N EKIL IY GDYD V DG IT ST AILVEF L EL L 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 107 G A K C D F YIPNRFTEGYGPN ET AFR TAS E Q G YNV IITVD T GIT SVH E ADI A N ELG M D L I I TDHH EPQTNI PE CF AI IH P KC 186
Cdd:TIGR00644 82 G V K V D Y YIPNRFTEGYGPN PE AFR KLH E D G VSL IITVD N GIT AHE E IKY A K ELG L D V I V TDHH LVPEDL PE AA AI VN P NR 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 187 - SPD YP F KELAGVGVA L K FAE A ILGYFPV ------ QL L SYA A I GTIAD L VPL FD ENR VIAYY GL EE LR TTTDV GLKAL IQ 259
Cdd:TIGR00644 162 p DCN YP Q KELAGVGVA F K LVQ A LYEELRK pkpdle EF L DLV A L GTIAD V VPL TG ENR ALVKK GL KV LR KQKRP GLKAL LE 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 260 V CQL -- ED L DEQS IGF S IGPR L NA V GRL Q DA D L A VELLL ME D MES A I E I A N E INKI N D ERK KVV Q RIVS EA DQ I VKSKPE 337
Cdd:TIGR00644 242 V AGV dk DK L SSTD IGF I IGPR I NA A GRL G DA S L G VELLL TD D PKE A R E L A E E LDSL N Q ERK DIE Q TVLE EA LA I AEAEET 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 338 - RRI IVV SN E G W NQ GVLGIVAS H L VRK Y DR P AI V LSTQPEL G VV KGS A RSI PAF DL FEGCMRM R D - LF TH FGGH SQ AAG M 415
Cdd:TIGR00644 322 n DSV IVV AK E N W HE GVLGIVAS R L AEE Y NK P VL V FAIDEGK G IA KGS G RSI SGI DL YDALSEA R E s LF LK FGGH AM AAG L 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 416 T L PI EN VDKLEFQ L DNILNNE L AEEDLKQE LE IS G Q L SLEH I TL ELIR DISK L A PFG MK NP K P V F QI K EI - PA DIK RI G s 494
Cdd:TIGR00644 402 S L KR EN LEEFREK L NELFSKS L EKDESEPI LE VD G E L PPSD I DF ELIR QLES L E PFG QG NP E P L F VL K DL r VE DIK LL G - 480
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 516407741 495 q K NHLK MQFRTSSTRMD AI G F GW G DVYNQIAPQT PI KI AG E L S INEWNGN Q T A QL M I Q D 553
Cdd:TIGR00644 481 - G NHLK LSLKSGEKNIE AI A F NA G EQLLELNGGE PI DV AG K L K INEWNGN K T P QL I I K D 538
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
28-554
4.70e-101
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 323.18
E-value: 4.70e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 28 PL MKQ L FIQ RG LTTNE E VQ R flsp QIED L HQPFL L KDM EKAV QRVHK A IQNEEK I L V F GD Y DADG VS ST VVMLK AL TE LG 107
Cdd:PRK11070 22 PL LRR L YAS RG VRSAQ E LE R ---- SVKG L LPWQQ L SGI EKAV ELLYN A LREGTR I I V V GD F DADG AT ST ALSVL AL RS LG 97
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 108 AK - C D FYI PNRF TE GYG PNETAFRT A SEQ G YNV I I TVD T GI T S VHEADI A NE LG MDLII TDHH E P QTNI P ECF AII H P K - 185
Cdd:PRK11070 98 CS n V D YLV PNRF ED GYG LSPEVVDQ A HAR G AQL I V TVD N GI S S HAGVAH A HA LG IPVLV TDHH L P GETL P AAD AII N P N l 177
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 186 -- C sp DY P F K E LAGVGVA LKFAE A I ------ L G Y F PVQ --------- LL SYA A I GT I AD L VPL FDE NR VIAYY GL EEL R T 248
Cdd:PRK11070 178 rd C -- NF P S K S LAGVGVA FYLML A L raflrd Q G W F DER giaipnlae LL DLV A L GT V AD V VPL DAN NR ILVWQ GL SRI R A 255
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 249 - TTDV G L KAL IQ V CQLE -- D L DEQSI GF SI GPRLNA V GRL Q D ADLA V E LLL MEDMES A IEI ANE INKI N DE RK KVV Q RIV 325
Cdd:PRK11070 256 g KCRP G I KAL LE V ANRD aq K L AASDL GF AL GPRLNA A GRL D D MSVG V A LLL CDNIGE A RVL ANE LDAL N QT RK EIE Q GMQ 335
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 326 S EA DQIVK s K P ER RI ------ IVVSNEG W N QGV L GI V AS HLVRKYD RP A I VLSTQPE l G VV KGS A RSI PAF dlfegcm R M 399
Cdd:PRK11070 336 V EA LTLCE - K L ER SS dtlpyg LAMYHPE W H QGV V GI L AS RIKERFH RP V I AFAPAGD - G TL KGS G RSI QGL ------- H M 406
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 400 RD ----------- L FTH FGGH SQ AAG MT L PIENVDKLEFQLDNILNNE L AEED L KQELEIS G Q LS LEHIT L --- EL I RD I 465
Cdd:PRK11070 407 RD alerldtlypg L ILK FGGH AM AAG LS L EEDKFELFQQRFGELVTEW L DPSL L QGVVWSD G E LS PAEMS L eva EL L RD A 486
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 466 skl A P F G MKN P K P V F qikeipa D IK - R IGS Q K ---- N HLK MQFR -- TSSTRM D A I G F G ----- W G D vynqi APQTPIKI A 533
Cdd:PRK11070 487 --- G P W G QMF P E P L F ------- D GR f R LLQ Q R lvge R HLK VMVE pv GGGPLL D G I A F N vdttl W P D ----- NSVREVEL A 551
570 580
....*....|....*....|.
gi 516407741 534 GE L S INE WN GN QTA QL M I QDM 554
Cdd:PRK11070 552 YK L D INE FR GN RSL QL I I DHI 572
ssDNA-exonuc_C
pfam10141 Single-strand DNA-specific exonuclease, C terminal domain; Members of this set of prokaryotic ...
560-753
4.50e-65
Single-strand DNA-specific exonuclease, C terminal domain; Members of this set of prokaryotic domains are found in a set of single-strand DNA-specific exonucleases, including RecJ. Their exact function has not, as yet, been determined.
Pssm-ID: 431083
Cd Length: 202
Bit Score: 215.19
E-value: 4.50e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 560 QLFD F RGKR - R E NII P HF E EDAIIVSNQ T KNMV - S E VSQV S YNKDI I SDYNKC ------ QT V YIDE LP KH L DD L KYVINY 631
Cdd:pfam10141 1 QLFD Y RGKR l N E KKL P KE E RVYVFFHEK T LEQL q L E IPSD S QVYWL I DADEET aeafdy GY V VLLD LP DS L EQ L EELLEK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 632 F QP KK I VACYEV E S S N Y LFAF P S RE D F V W F Y ALI KKQ GP F HMHTYLDS L R KH K GW NDDKIN FM SE VF SD LGFV K IE N G K I 711
Cdd:pfam10141 81 K QP ER I YLLFYQ E E S A Y FEGM P T RE Q F K W L Y KFL KKQ PE F DLKKHGKA L A KH L GW SEETLI FM IK VF FE LGFV T IE D G V I 160
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 516407741 712 TALD NP L K K DL S ES TV YQ S R EQ Q S E I EK Q L Y YS N Y ED L RK W F 753
Cdd:pfam10141 161 SLVE NP E K R DL T ES PT YQ A R LE Q I E L EK K L L YS S Y DE L KS W L 202
RecJ_OB
pfam17768 RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
448-553
1.45e-38
RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
Pssm-ID: 465495 [Multi-domain]
Cd Length: 107
Bit Score: 138.39
E-value: 1.45e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 448 I SGQ L S L EH ITLELI RDISK L A PFG MK NP K PVF QIKEIP - A D IKR IG SQK NHLK MQF R TSSTRM DAI G F GW G DVYNQI A P 526
Cdd:pfam17768 1 I DAE L P L SD ITLELI EELER L E PFG QG NP E PVF ALRNVR v L D VRI IG KDG NHLK LTL R DGGRSL DAI A F NM G ELLPEL A S 80
90 100
....*....|....*....|....*..
gi 516407741 527 QTPIK IA GE L S INEWNG NQTA QL M I Q D 553
Cdd:pfam17768 81 GDKVD IA YT L E INEWNG RRSL QL R I K D 107
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
3-538
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 729.20
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 3 ESKMK W RYNQIEDHK - SS L LENTDQ SPL MKQ L FIQ RG L TT N EE VQR FL S P QIE DLH Q PFLLKDM E KAV Q R VHK AI Q N E EK 81
Cdd:COG0608 2 STGRR W ILKPPDPEL v EA L AKELGL SPL LAR L LAN RG I TT P EE AEA FL D P SLK DLH D PFLLKDM D KAV E R LAE AI E N G EK 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 82 IL VF GDYD A DG VS ST VVMLKA L TE LGA KC D F YIPNRF T EGYG P N ET A FRT A S EQG YNV IITVD T GI T S VH E ADI A N ELG M 161
Cdd:COG0608 82 IL IY GDYD V DG AT ST ALLVRF L RA LGA NV D Y YIPNRF E EGYG L N PE A VER A A EQG VDL IITVD C GI S S HE E VAY A K ELG I 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 162 D L I I TDHH E P QTNI P ECF AI IH PK CSP - DYPFKELAGVGVA L K F A E A ILGYF ------- PVQ LL SYA A I GT I AD L VPL FD 233
Cdd:COG0608 162 D V I V TDHH L P GEEL P PAD AI VN PK RPD c DYPFKELAGVGVA F K L A Q A LRREL rerpepd LAE LL DLV A L GT V AD V VPL TG 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 234 ENR VIAYY GL EE LR T T TDV GL K AL IQ V CQ L ED -- LDEQS IGF SI GPR L NA V GRL Q DA D L A VELLL ME D M E S A I E I A N E IN 311
Cdd:COG0608 242 ENR ILVKQ GL KR LR A T KRP GL R AL LE V AG L DP ke ITAED IGF AL GPR I NA A GRL G DA S L G VELLL TD D E E E A R E L A E E LD 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 312 KI N D ERK KVVQR I VS EA DQIVKSK P E --- RRII V VSN E G W NQ GV L GIVAS H L VR KY D RP A IVL STQPE l G VV KGSARSIP 388
Cdd:COG0608 322 EL N R ERK EIEAE I TE EA LAQIEEL P D led PKVL V LYD E D W HP GV I GIVAS R L KE KY H RP T IVL AIDED - G IA KGSARSIP 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 389 A FDL FEGCMRMR DL FTH FGGH SQ AAG M TL PI EN VDKLEFQLDNILNNE LAEEDL KQE LEI S G Q L S L EHI TLEL IRDISK L 468
Cdd:COG0608 401 G FDL YDALDACS DL LLK FGGH AM AAG L TL KE EN LEAFRERFNEVVAEQ LAEEDL EPV LEI D G E L P L SEL TLEL AEELEQ L 480
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516407741 469 A PFG MK NP K PVF QIKEIP - ADIKRI G SQK NHLK MQF R TSST R M DAI G F GW GD VYNQI - APQTPIK IA GE L S I 538
Cdd:COG0608 481 E PFG QG NP E PVF LGRNVR v VSQRIV G KDG NHLK LTL R DGGR R L DAI A F NA GD KLEEL p NAGKRVD IA YT L D I 552
RecJ
COG4199 ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
1-761
0e+00
ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
Pssm-ID: 443353 [Multi-domain]
Cd Length: 774
Bit Score: 642.13
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 1 MLESKMKWRYNQI E DHKSS L LENTDQSP L MKQ L FIQRGLTTNE E VQRFLS pqie DLHQPF L LKD M EK A VQ R VHKAIQNEE 80
Cdd:COG4199 5 KIKKEKDEKKEEK E ESELL L SLLVLLLL L LRG L LETEEAAEEL E LHELFL ---- HDDLLL L MML M AV A RE R IAIIEEAII 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 81 K I LVFG D Y D A D GVS S T V VMLKA L TELGAKCDFYIPN RF TE G Y G PNET A FRT A SEQ G YNV I I TV DTGITS V HE A DIANE L G 160
Cdd:COG4199 81 I I EGDD D D D G D DTT S V V STTLL L LGALLDYYIPNRF RF GG G P G EAGP A EAA A GGA G LII I V TV IIAVNG V IA A AEEKG L D 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 161 MDLIITD H H E PQTNIPECF A IIH P KCS P DYPFKELA G VGV A LKF A EAI LG YFPVQ LL SY A AIGTI ADLV P L FDEN R VIAY 240
Cdd:COG4199 161 IIIDDHH H P E HEEPLADAI A PPP P PPP P PPFGELAG G GVA A AVA A ALL LG LPLLL LL LL A LLTAA ADLV L L LENR R LLRR 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 241 YG L EE L RT T TDV GL ---- K AL IQVCQL E DLD E QSI G FS I GPRLNAV GR LQD A DLAVE LL LM E DM E S A I E I A NEI N KIND E 316
Cdd:COG4199 241 LL L LK L LS T ERL GL lllk A AL LLASII E EEE E GFG G GP I LNAAARL GR AAA A VALLL LL DE E EE E E A A E L A EAQ N EERQ E 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 317 RK K VVQRIVS E ADQIVKS K PERRII VV SNE GWN Q GV LGI V ASHL V RKYDR P A I V L STQP E L G VVK G SAR SI PA F DLFEGC 396
Cdd:COG4199 321 IV K IIEAEAI E EEEEAEE K DDNVVV VV AEG GWN G GV GVV V SVVV V KYRRP P L I L L IDDE E K G KAG G GSS SI SF F LFLLEL 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 397 MRM R D L FTHF GG HSQ AA GMT L PIENV D K L EFQ L DNILNN EL A EEDL KQ EL EISGQ L SLEH I TLEL I RDISK L A P F G MKN P 476
Cdd:COG4199 401 SLE R L L LLFG GG GGA AA AAL L LEDVE D L L RLL L ELAALL EL L EEDL PP EL IDDLL L ISDE I IIII I EEELL L P P G G GPP P 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 477 K P V F QIK EI PADIK RIG SQKN HLK MQFRTSSTRM DA I GF GW G DVYNQIA P Q T P I KIA G E LSINEWN GNQTA QLMIQD MKI 556
Cdd:COG4199 481 P P K F VLL EI AINKR RIG GANK HLK KLLTGEGELL DA G GF FG G GLLEEEL P D T I I VVV G G LSINEWN NRRKP QLMIQD IAV 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 557 D EWQLFD F RGKR R - E NII P HFE - E DAII V SNQTKNMVSEV S QVS Y ------- NKDIIS D YNKCQTVYIDE LP KH L DD L KY 627
Cdd:COG4199 561 N EWQLFD Y RGKR D a E KWL P ILP k E KTVF V AFHEETIKKFQ S YIY Y eeivlvd DEEGEE D DLDVKYLVLLD LP DS L EQ L EE 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 628 VINYF QP KK I V A CYEV E S S N Y LFAF P S RE D F V W F Y ALI KK QGP F HMHTYLDS L R KHKGW NDDKIN FM SE VF SD LGFV K IE 707
Cdd:COG4199 641 LLETL QP ER I Y A LFYQ E E S H Y FSGM P T RE Q F K W L Y KFL KK RKQ F DLRKHGPQ L A KHKGW SKETLK FM TK VF FE LGFV T IE 720
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 516407741 708 N G K I TALD NP L K K DL S ES TV YQ S R EQ Q S E I EK Q L Y YS N Y ED L RK WF MEC M DYLE 761
Cdd:COG4199 721 D G V I SINE NP E K R DL T ES PT YQ L R QE Q I E L EK K L L YS S Y SE L KQ WF ESQ M EESS 774
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
27-553
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 585.04
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 27 S P LMK Q LFIQ RG L T TN EE VQR FL S P QIE DL HQ PFLL K DMEKAV Q R VHK A IQ N E EKIL VF GDYD A DG VS ST VVMLKA L TE L 106
Cdd:TIGR00644 2 G P ILA Q ILAS RG I T DA EE LEN FL N P KLK DL PP PFLL L DMEKAV E R LIE A VE N N EKIL IY GDYD V DG IT ST AILVEF L EL L 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 107 G A K C D F YIPNRFTEGYGPN ET AFR TAS E Q G YNV IITVD T GIT SVH E ADI A N ELG M D L I I TDHH EPQTNI PE CF AI IH P KC 186
Cdd:TIGR00644 82 G V K V D Y YIPNRFTEGYGPN PE AFR KLH E D G VSL IITVD N GIT AHE E IKY A K ELG L D V I V TDHH LVPEDL PE AA AI VN P NR 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 187 - SPD YP F KELAGVGVA L K FAE A ILGYFPV ------ QL L SYA A I GTIAD L VPL FD ENR VIAYY GL EE LR TTTDV GLKAL IQ 259
Cdd:TIGR00644 162 p DCN YP Q KELAGVGVA F K LVQ A LYEELRK pkpdle EF L DLV A L GTIAD V VPL TG ENR ALVKK GL KV LR KQKRP GLKAL LE 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 260 V CQL -- ED L DEQS IGF S IGPR L NA V GRL Q DA D L A VELLL ME D MES A I E I A N E INKI N D ERK KVV Q RIVS EA DQ I VKSKPE 337
Cdd:TIGR00644 242 V AGV dk DK L SSTD IGF I IGPR I NA A GRL G DA S L G VELLL TD D PKE A R E L A E E LDSL N Q ERK DIE Q TVLE EA LA I AEAEET 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 338 - RRI IVV SN E G W NQ GVLGIVAS H L VRK Y DR P AI V LSTQPEL G VV KGS A RSI PAF DL FEGCMRM R D - LF TH FGGH SQ AAG M 415
Cdd:TIGR00644 322 n DSV IVV AK E N W HE GVLGIVAS R L AEE Y NK P VL V FAIDEGK G IA KGS G RSI SGI DL YDALSEA R E s LF LK FGGH AM AAG L 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 416 T L PI EN VDKLEFQ L DNILNNE L AEEDLKQE LE IS G Q L SLEH I TL ELIR DISK L A PFG MK NP K P V F QI K EI - PA DIK RI G s 494
Cdd:TIGR00644 402 S L KR EN LEEFREK L NELFSKS L EKDESEPI LE VD G E L PPSD I DF ELIR QLES L E PFG QG NP E P L F VL K DL r VE DIK LL G - 480
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 516407741 495 q K NHLK MQFRTSSTRMD AI G F GW G DVYNQIAPQT PI KI AG E L S INEWNGN Q T A QL M I Q D 553
Cdd:TIGR00644 481 - G NHLK LSLKSGEKNIE AI A F NA G EQLLELNGGE PI DV AG K L K INEWNGN K T P QL I I K D 538
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
28-554
4.70e-101
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 323.18
E-value: 4.70e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 28 PL MKQ L FIQ RG LTTNE E VQ R flsp QIED L HQPFL L KDM EKAV QRVHK A IQNEEK I L V F GD Y DADG VS ST VVMLK AL TE LG 107
Cdd:PRK11070 22 PL LRR L YAS RG VRSAQ E LE R ---- SVKG L LPWQQ L SGI EKAV ELLYN A LREGTR I I V V GD F DADG AT ST ALSVL AL RS LG 97
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 108 AK - C D FYI PNRF TE GYG PNETAFRT A SEQ G YNV I I TVD T GI T S VHEADI A NE LG MDLII TDHH E P QTNI P ECF AII H P K - 185
Cdd:PRK11070 98 CS n V D YLV PNRF ED GYG LSPEVVDQ A HAR G AQL I V TVD N GI S S HAGVAH A HA LG IPVLV TDHH L P GETL P AAD AII N P N l 177
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 186 -- C sp DY P F K E LAGVGVA LKFAE A I ------ L G Y F PVQ --------- LL SYA A I GT I AD L VPL FDE NR VIAYY GL EEL R T 248
Cdd:PRK11070 178 rd C -- NF P S K S LAGVGVA FYLML A L raflrd Q G W F DER giaipnlae LL DLV A L GT V AD V VPL DAN NR ILVWQ GL SRI R A 255
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 249 - TTDV G L KAL IQ V CQLE -- D L DEQSI GF SI GPRLNA V GRL Q D ADLA V E LLL MEDMES A IEI ANE INKI N DE RK KVV Q RIV 325
Cdd:PRK11070 256 g KCRP G I KAL LE V ANRD aq K L AASDL GF AL GPRLNA A GRL D D MSVG V A LLL CDNIGE A RVL ANE LDAL N QT RK EIE Q GMQ 335
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 326 S EA DQIVK s K P ER RI ------ IVVSNEG W N QGV L GI V AS HLVRKYD RP A I VLSTQPE l G VV KGS A RSI PAF dlfegcm R M 399
Cdd:PRK11070 336 V EA LTLCE - K L ER SS dtlpyg LAMYHPE W H QGV V GI L AS RIKERFH RP V I AFAPAGD - G TL KGS G RSI QGL ------- H M 406
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 400 RD ----------- L FTH FGGH SQ AAG MT L PIENVDKLEFQLDNILNNE L AEED L KQELEIS G Q LS LEHIT L --- EL I RD I 465
Cdd:PRK11070 407 RD alerldtlypg L ILK FGGH AM AAG LS L EEDKFELFQQRFGELVTEW L DPSL L QGVVWSD G E LS PAEMS L eva EL L RD A 486
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 466 skl A P F G MKN P K P V F qikeipa D IK - R IGS Q K ---- N HLK MQFR -- TSSTRM D A I G F G ----- W G D vynqi APQTPIKI A 533
Cdd:PRK11070 487 --- G P W G QMF P E P L F ------- D GR f R LLQ Q R lvge R HLK VMVE pv GGGPLL D G I A F N vdttl W P D ----- NSVREVEL A 551
570 580
....*....|....*....|.
gi 516407741 534 GE L S INE WN GN QTA QL M I QDM 554
Cdd:PRK11070 552 YK L D INE FR GN RSL QL I I DHI 572
ssDNA-exonuc_C
pfam10141 Single-strand DNA-specific exonuclease, C terminal domain; Members of this set of prokaryotic ...
560-753
4.50e-65
Single-strand DNA-specific exonuclease, C terminal domain; Members of this set of prokaryotic domains are found in a set of single-strand DNA-specific exonucleases, including RecJ. Their exact function has not, as yet, been determined.
Pssm-ID: 431083
Cd Length: 202
Bit Score: 215.19
E-value: 4.50e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 560 QLFD F RGKR - R E NII P HF E EDAIIVSNQ T KNMV - S E VSQV S YNKDI I SDYNKC ------ QT V YIDE LP KH L DD L KYVINY 631
Cdd:pfam10141 1 QLFD Y RGKR l N E KKL P KE E RVYVFFHEK T LEQL q L E IPSD S QVYWL I DADEET aeafdy GY V VLLD LP DS L EQ L EELLEK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 632 F QP KK I VACYEV E S S N Y LFAF P S RE D F V W F Y ALI KKQ GP F HMHTYLDS L R KH K GW NDDKIN FM SE VF SD LGFV K IE N G K I 711
Cdd:pfam10141 81 K QP ER I YLLFYQ E E S A Y FEGM P T RE Q F K W L Y KFL KKQ PE F DLKKHGKA L A KH L GW SEETLI FM IK VF FE LGFV T IE D G V I 160
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 516407741 712 TALD NP L K K DL S ES TV YQ S R EQ Q S E I EK Q L Y YS N Y ED L RK W F 753
Cdd:pfam10141 161 SLVE NP E K R DL T ES PT YQ A R LE Q I E L EK K L L YS S Y DE L KS W L 202
RecJ_OB
pfam17768 RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
448-553
1.45e-38
RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
Pssm-ID: 465495 [Multi-domain]
Cd Length: 107
Bit Score: 138.39
E-value: 1.45e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 448 I SGQ L S L EH ITLELI RDISK L A PFG MK NP K PVF QIKEIP - A D IKR IG SQK NHLK MQF R TSSTRM DAI G F GW G DVYNQI A P 526
Cdd:pfam17768 1 I DAE L P L SD ITLELI EELER L E PFG QG NP E PVF ALRNVR v L D VRI IG KDG NHLK LTL R DGGRSL DAI A F NM G ELLPEL A S 80
90 100
....*....|....*....|....*..
gi 516407741 527 QTPIK IA GE L S INEWNG NQTA QL M I Q D 553
Cdd:pfam17768 81 GDKVD IA YT L E INEWNG RRSL QL R I K D 107
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
81-224
3.15e-36
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 133.47
E-value: 3.15e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 81 KI LVF G D Y -- D A DG VS S TVVMLKA L T EL - G AKCDF YIP N R FT EGYG P N ET A FRTASEQG y NVI ITVD T GI T SV HEADI A N 157
Cdd:pfam01368 1 KI VIY G H Y np D G DG IG S ALGLYRY L K EL v G PDVEY YIP D R LE EGYG I N PE A IEELIDFD - TLL ITVD C GI K SV EGIEL A K 79
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 516407741 158 ELG M D L I IT DHH E P QTNI P ECF AII H P KCS P DY pfkel AGVG V AL K FAEAIL G YFPV ---- Q L LSYAAI G T 224
Cdd:pfam01368 80 ELG I D V I VI DHH L P NDFL P DAD AII N P REP P AS ----- STSE V VF K LLQYAY G EEGK eidk E L ADLLLL G I 145
DHHA1
pfam02272 DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called ...
305-425
1.66e-13
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Pssm-ID: 396724 [Multi-domain]
Cd Length: 139
Bit Score: 68.24
E-value: 1.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 305 E IAN E INKINDERKKVVQRIVS E ADQIVKSKPE rr IIVVSN EGW NQ G V LGI V A SH L VR K YDR P A IVL STQPELGV VK G SA 384
Cdd:pfam02272 10 E LEK E LEELKEALALLKAKELL E KAEEINGVKV -- LVAEVG EGW DA G A LGI A A DR L KK K LGD P V IVL VAKEDGDK VK V SA 87
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 516407741 385 RS IPA -- F D LF E G cmr MRDLFTH ---- F GGH SQ AAG MTLPI E NV D KL 425
Cdd:pfam02272 88 RS SKD kg V D AG E L --- LKEVAAI lggg G GGH DL AAG AGIDA E KL D EA 131
NrnA
COG0618 nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and ...
70-433
4.20e-07
nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440383 [Multi-domain]
Cd Length: 312
Bit Score: 52.50
E-value: 4.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 70 QRVHKAIQNEEK IL VFG - DY - D A D GVS S TVVMLKA L TE LG AKCDFYI P NRFTEGY ---- G PN E TAFRTASEQG Y NVI I T V 143
Cdd:COG0618 1 EELAELLKKADR IL ILT h VN p D G D ALG S ALALALL L RA LG KEVTIVY P GEIPHEL aflp G AD E IVRLEDVDLE Y DLV I V V 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 144 DT GITSV -- HE A DIANELGMDLI I t DHH EPQTNIPE c F AIIH P kcspdypfkelagvgvalkfaeailgyfpvqll SYA A 221
Cdd:COG0618 81 DT SSPDR ig DL A ELLEKAKPVIV I - DHH PSNDDFGD - F NDVD P --------------------------------- DAG A 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 222 IGT I ad LVP L FD E ----- NRV IA --- Y Y G L eelrt T TD V G lkaliqvcqledldeqsi G F --- SIG PR - LN A VGR L -- QD 287
Cdd:COG0618 126 TSE I -- IYE L LK E lgiei DPE IA tal Y T G I ----- V TD T G ------------------ S F rys NTT PR d FR A AAE L le KG 180
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 288 ADL A velllmedmesai E IA NEIN - KIND E RK K VVQ R I ----- V S E ADQIV kskperr IIVVSN E ----- G WNQGVLGIV 356
Cdd:COG0618 181 ADL D ------------- L IA RILY p SLSL E QL K LLG R A lenle V L E DGKVA ------- YSYLTK E dleef G ATPDDTEGL 240
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516407741 357 ASH L VR ---- KY drp A I V LSTQPE l G VV K G S A RS IPAF D lfegcmr MRDLFTH F -- GGH SQ AAG M T L P IENVDKLEFQ L D 430
Cdd:COG0618 241 VDY L LS iegv EV --- A V V FGEVED - G EI K V S L RS KGRV D ------- VGEIARE F gg GGH AR AAG A T I P GLDLEEVVEK L L 309
...
gi 516407741 431 NI L 433
Cdd:COG0618 310 EA L 312
GlpM
pfam06942 GlpM protein; This family consists of several bacterial GlpM membrane proteins. GlpM is a ...
192-258
8.32e-03
GlpM protein; This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa.
Pssm-ID: 429201
Cd Length: 107
Bit Score: 36.60
E-value: 8.32e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 516407741 192 FK E L A G VG V A L KF A eailgyfpvq LLS YAAIGT IA D LVPLF DENRV IA Y Y ------ G LEE LRTT TDV GL KAL I 258
Cdd:pfam06942 1 FK C L L G AL V V L LI A ---------- LLS KTKNYY IA G LVPLF PTFAL IA H Y ivgter G IDA LRTT ILF GL WSI I 63
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
