|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
3-286 |
4.02e-136 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 386.71 E-value: 4.02e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 3 RTINFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTQVREELVKAGYHEAIVQSFGATTDL 82
Cdd:COG0341 7 TNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSDNDV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 83 LVRMP---GEDPQLGHQVAEALQKVGGDnpAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIV 159
Cdd:COG0341 87 LIRTPpldGESAEEVEKVRAALKEAFGD--VEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVGAVV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 160 SLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSIST 239
Cdd:COG0341 165 ALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTINTSLTT 244
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 516457348 240 LLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWLNLN 286
Cdd:COG0341 245 LLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
2-283 |
8.18e-98 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 304.08 E-value: 8.18e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 2 LRTINFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTQVREELVKAGYHEAIVQSFGA-TT 80
Cdd:PRK13024 446 FDRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNN 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 81 DLLVRMPGEDPQLGHQVAEALQKV----GGDNPAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVG 156
Cdd:PRK13024 526 QVLVRTYGILSDDEEADTEIVAKLknalKNDKGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLG 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 157 AIVSLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATS 236
Cdd:PRK13024 606 AILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTS 685
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 516457348 237 ISTLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWL 283
Cdd:PRK13024 686 LTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDL 732
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
33-276 |
5.40e-92 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 273.38 E-value: 5.40e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 33 GLNYGLDFTGGTLIELTYEKPADVTQVREELVKAGYHEAIVQSFGATTDLLVRMPGED----PQLGHQVAEALQKVGGDn 108
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDteqsEELREALEEALKNVDPD- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 109 pAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVVVTVGILAYFQITFDLTVLAAVL 188
Cdd:TIGR00966 80 -AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 189 AIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGVLAG 268
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*...
gi 516457348 269 TYSSIYIA 276
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
96-283 |
6.48e-68 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 209.77 E-value: 6.48e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 96 QVAEALQKVGGDnpAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVVVTVGILAYF 175
Cdd:pfam02355 1 VVEALLKNVGPD--AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 176 QITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLW 255
Cdd:pfam02355 79 GIEVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLK 158
|
170 180
....*....|....*....|....*...
gi 516457348 256 GFSLALFIGVLAGTYSSIYIANVVLIWL 283
Cdd:pfam02355 159 DFSLALLVGVIVGTYSSIFIASPILLDL 186
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
132-208 |
9.19e-08 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 53.24 E-value: 9.19e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516457348 132 LGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVREN 208
Cdd:NF037998 961 ISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSL 1037
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
3-286 |
4.02e-136 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 386.71 E-value: 4.02e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 3 RTINFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTQVREELVKAGYHEAIVQSFGATTDL 82
Cdd:COG0341 7 TNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSDNDV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 83 LVRMP---GEDPQLGHQVAEALQKVGGDnpAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIV 159
Cdd:COG0341 87 LIRTPpldGESAEEVEKVRAALKEAFGD--VEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVGAVV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 160 SLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSIST 239
Cdd:COG0341 165 ALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTINTSLTT 244
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 516457348 240 LLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWLNLN 286
Cdd:COG0341 245 LLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
2-283 |
8.18e-98 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 304.08 E-value: 8.18e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 2 LRTINFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTQVREELVKAGYHEAIVQSFGA-TT 80
Cdd:PRK13024 446 FDRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNN 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 81 DLLVRMPGEDPQLGHQVAEALQKV----GGDNPAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVG 156
Cdd:PRK13024 526 QVLVRTYGILSDDEEADTEIVAKLknalKNDKGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLG 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 157 AIVSLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATS 236
Cdd:PRK13024 606 AILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTS 685
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 516457348 237 ISTLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWL 283
Cdd:PRK13024 686 LTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDL 732
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
33-276 |
5.40e-92 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 273.38 E-value: 5.40e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 33 GLNYGLDFTGGTLIELTYEKPADVTQVREELVKAGYHEAIVQSFGATTDLLVRMPGED----PQLGHQVAEALQKVGGDn 108
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDteqsEELREALEEALKNVDPD- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 109 pAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVVVTVGILAYFQITFDLTVLAAVL 188
Cdd:TIGR00966 80 -AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 189 AIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGVLAG 268
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*...
gi 516457348 269 TYSSIYIA 276
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
5-304 |
2.10e-80 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 260.04 E-value: 2.10e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 5 INFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEK-PADVTQVREELVKAGYHEAIVQSFGATTDLL 83
Cdd:PRK14726 547 IRFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQgNADIADIRARLNELNLGEVQVERFGSPRDAL 626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 84 VRMPGEDpqlGHQVAE--ALQKVGGDNPAA--VKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIV 159
Cdd:PRK14726 627 IRIASQD---GGENAEqsAVTLVRGELEDDydFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVGAII 703
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 160 SLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSIST 239
Cdd:PRK14726 704 ATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTSATT 783
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516457348 240 LLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWLNLNSEDlipPAATGKEVDDRP 304
Cdd:PRK14726 784 LLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIVFKLRPES---LDGEESNKTDAG 845
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
96-283 |
6.48e-68 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 209.77 E-value: 6.48e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 96 QVAEALQKVGGDnpAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVVVTVGILAYF 175
Cdd:pfam02355 1 VVEALLKNVGPD--AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 176 QITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLW 255
Cdd:pfam02355 79 GIEVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLK 158
|
170 180
....*....|....*....|....*...
gi 516457348 256 GFSLALFIGVLAGTYSSIYIANVVLIWL 283
Cdd:pfam02355 159 DFSLALLVGVIVGTYSSIFIASPILLDL 186
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
2-288 |
6.55e-68 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 213.56 E-value: 6.55e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 2 LRTINFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTQVREELVKAGYHEAIVQSFGATTD 81
Cdd:PRK13021 1 MKNINLTKWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEPGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 82 LLVRMPGED-PQLGHQVAEALQKVGGDnpAAVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVS 160
Cdd:PRK13021 81 WVLRYAPADtAQSNVDIQQALAPLGTE--VQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 161 LIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSISTL 240
Cdd:PRK13021 159 LVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTL 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 516457348 241 LAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWLNLNSE 288
Cdd:PRK13021 239 MTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPE 286
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
115-273 |
9.60e-52 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 168.59 E-value: 9.60e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 115 VEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYS 194
Cdd:TIGR00916 34 VGTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 516457348 195 LNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSI 273
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
5-289 |
1.33e-49 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 175.58 E-value: 1.33e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 5 INFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEK-PADVTQVREELVKAGYHEAIVQSFGATTDLL 83
Cdd:PRK13023 453 IPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNgDANLEDINERLAELNIDSARVLPAKSPRSAL 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 84 VRMPGEDPQLGHQVAEALQKVGGDNPA-AVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLI 162
Cdd:PRK13023 533 VIIGSQEVGDDAEQTVAVKLRGEFEQDySFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTL 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 163 HDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENINISTTQTLLRTMATSISTLLA 242
Cdd:PRK13023 613 HDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLA 692
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 516457348 243 IAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWLNLNSED 289
Cdd:PRK13023 693 HVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLKPRE 739
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
16-283 |
2.43e-32 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 126.51 E-value: 2.43e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 16 GVTVLLTVLAL-FSWFHKGLnyGLDFTGGTLIELTY--EKPADVTQVREELVKAGYHEAI------VQSFGATTDL---- 82
Cdd:PRK12911 1095 GSVLVLGCVALgFGAWNSVL--GMDFKGGYALTLDPsdVCEYDVEQMRSKLRKKFQQIGLssrdfrIRTFDSSEKIkiyf 1172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 83 ----LVRMPGE--------DPQLGhQVAEALQKVGGD-NPAAVKRVEF----VGPQVGEELRDQGGLGMLMALVGIMIYL 145
Cdd:PRK12911 1173 sqnaLDRVEAIegagseqsDHHLA-LVLGVLSDTGSDtSSEVFDATQNfwfkVSGQLSNKMRTQAVIALFGALGIILLYV 1251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 146 AFRFQWKFGVGAIVSLIHDVVVTVGIL--AYF---QITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENfrvlRKATLIEN 220
Cdd:PRK12911 1252 SLRFEWRYAFSAICALIHDLLATCAVLvaLHFflqKIQIDLQAIGALMTVLGYSLNNTLIIFDRIRED----RQEKLFTP 1327
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516457348 221 ----INISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWL 283
Cdd:PRK12911 1328 mpilINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFM 1394
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
90-280 |
1.58e-16 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 79.25 E-value: 1.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 90 DPQLGHQVAEALQkvGGDNPAAVKRVE--FVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWkFGVGAIVSLIHDVVV 167
Cdd:TIGR01129 210 TAEEANDLALVLR--SGALPAPLQILEerTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINIVL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 168 TVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVREnfrVLRKATLIEN-INISTTQTLLRTMATSISTLLAIAAL 246
Cdd:TIGR01129 287 ILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKE---ELRLGKSVRQaIEAGFERAFSTIFDANITTLIAALIL 363
|
170 180 190
....*....|....*....|....*....|....
gi 516457348 247 MIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVL 280
Cdd:TIGR01129 364 YVFGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
109-283 |
1.09e-13 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 70.91 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 109 PAAVKRVE--FVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWkFGVGAIVSLIHDVVVTVGILAYFQITFDLTVLAA 186
Cdd:COG0342 250 PAPLEIVEerTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRL-PGLVANIALALNVVLLLGVLSLLGATLTLPGIAG 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 187 VLAIIGYSLNDTIVVFDRVRENFRV---LRKAtlIEN--------InisttqtllrtMATSISTLLAIAALMIFGGDNLW 255
Cdd:COG0342 329 IILTIGMAVDANVLIFERIREELRAgrsLRAA--IEAgfkrafstI-----------LDANVTTLIAAVVLFVLGTGPVK 395
|
170 180
....*....|....*....|....*...
gi 516457348 256 GFSLALFIGVLAGTYSSIYIANVVLIWL 283
Cdd:COG0342 396 GFAVTLILGILISMFTAVPVTRPLLNLL 423
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
109-283 |
1.08e-12 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 68.33 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 109 PAAVKRVE--FVGPQVGEELRDQGGLGMLMALVGIMIYLAFrFQWKFGVGAIVSLIHDVVVTVGILAYFQITFDLTVLAA 186
Cdd:PRK13024 245 PAPLKIIEsrSVGPTLGQDAIDAGIIAGIIGFALIFLFMLV-YYGLPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAG 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 187 VLAIIGYSLNDTIVVFDRVRENFRvlRKATLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGVL 266
Cdd:PRK13024 324 LVLGIGMAVDANVLIFERIKEELR--KGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGIL 401
|
170
....*....|....*..
gi 516457348 267 AGTYSSIYIANVVLIWL 283
Cdd:PRK13024 402 ASLFTAVFLTRLLLELL 418
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
20-267 |
4.61e-12 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 65.34 E-value: 4.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 20 LLTVLALFSWFHKGLNYGLDFTGGTLIELTYEkPADVTQVREELvkAGYHEAIVQSFGATTDLLVRMPGEDPQLGHQVAE 99
Cdd:PRK08578 28 LLLLGGTFATTGSPVKLGIDFTGGTEITIQTN-DASPDELESAL--SGEPGVDVRKGSGNGYIITFGSGDDTDVDKLADA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 100 ALQKVGGDN-PAAVKRVEFVGPQVGEELRDQGGLGMLMALVG--IMIYLAFR-FQWKFGVgaIVSLIHDVVVTVGILAYF 175
Cdd:PRK08578 105 VKEFFNVDSiSELNYSEKQIGPTFGSQFQEQALKAVGFAFIGmaVVVFLIFRtPVPSLAV--ILSAFSDIIIALALMNLF 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 176 QITFDLTVLAAVLAIIGYSLNDTIVVfdrvreNFRVL-RKATLIENINISttqtlLRTMAT-SISTLLAIAALMI----F 249
Cdd:PRK08578 183 GIELSLATVAALLMLIGYSVDSDILL------TTRVLkRRGTFDESIKRA-----MRTGITmTLTTIAAMAVLYIvstiP 251
|
250
....*....|....*...
gi 516457348 250 GGDNLWGFSLALFIGVLA 267
Cdd:PRK08578 252 QAEVLANIAAVLIFGLLA 269
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
116-288 |
1.10e-11 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 65.65 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 116 EFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFqwKFG-VGAIVSLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYS 194
Cdd:PRK12911 897 EVISPELGKSQRTQGIISVCLGLAVLIVLMSVYY--RFGgVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMA 974
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 195 LNDTIVVFDRVRENFRVLRkaTLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIY 274
Cdd:PRK12911 975 VDANVLVFERIREEYLLSR--SLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALF 1052
|
170
....*....|....*
gi 516457348 275 IAN-VVLIWLNLNSE 288
Cdd:PRK12911 1053 MTKfFFMIWMNKTQE 1067
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
109-284 |
6.32e-11 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 63.20 E-value: 6.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 109 PAAVKRVE--FVGPQVGEELRDQGGLGMLMA--LVGIMIYLAFRFqwkFGVGAIVSLIHDVVVTVGILAYFQITFDLTVL 184
Cdd:PRK14726 351 PATLTVVEerTVGPGLGADSIAAGLVAGLIAaiLVAALMIGFYGF---LGVIAVIALIVNVVLIIAVLSLLGATLTLPGI 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 185 AAVLAIIGYSLNDTIVVFDRVRENFRVLRkaTLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIG 264
Cdd:PRK14726 428 AGIVLTIGMAVDSNVLIYERIREEEKTGH--SLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVG 505
|
170 180
....*....|....*....|.
gi 516457348 265 VLAGTYSSIYI-ANVVLIWLN 284
Cdd:PRK14726 506 ILTTVFTAFTLtRSLVAVWLR 526
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
107-281 |
2.75e-08 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 54.84 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 107 DNPAAVKRVEFVGP-----QVGEELrdQGGLGMLMALVGIMI----YLAFRfQWKFGVGAIVSLIHDVVVTVGILAYFQI 177
Cdd:TIGR00921 167 TNPPSGKFLDVTGSpainyDIEREF--GKDMGTTMAISGILVvlvlLLDFK-RWWRPLLPLVIILFGVAWVLGIMGWLGI 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 178 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRkaTLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGF 257
Cdd:TIGR00921 244 PLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGR--AKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEF 321
|
170 180
....*....|....*....|....
gi 516457348 258 SLALFIGVLAGTYSSIYIANVVLI 281
Cdd:TIGR00921 322 GLGLVAGLITAYLLTLLVLPALLQ 345
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
28-54 |
5.23e-08 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 48.05 E-value: 5.23e-08
10 20
....*....|....*....|....*..
gi 516457348 28 SWFHKGLNYGLDFTGGTLIELTYEKPA 54
Cdd:pfam07549 1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
132-208 |
9.19e-08 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 53.24 E-value: 9.19e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516457348 132 LGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVVVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVREN 208
Cdd:NF037998 961 ISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSL 1037
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
39-281 |
2.48e-07 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 51.78 E-value: 2.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 39 DFTGGTLIELTYEK-PADVTQVREELVKA-GYHEAIVQSFGATTDLLVRM---PGEDPQLGHQVAEALQKVGGDNPAAVK 113
Cdd:COG1033 119 GLTVEPLIPDELPAsPEELAELREKVLSSpLYVGRLVSPDGKATLIVVTLdpdPLSSDLDRKEVVAEIRAIIAKYEDPGV 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 114 RVEFVG-PQVGEEL-----RDQGGLGMLMALVG-IMIYLAFRfQWKFGVGAIVSLIHDVVVTVGILAYFQITFD-LTVLA 185
Cdd:COG1033 199 EVYLTGfPVLRGDIaeaiqSDLAIFFPLALLLIlLLLFLFFR-SLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSpLTILV 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 186 AVLaIIGYSLNDTIVVFDRVRENFRvlRKATLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGV 265
Cdd:COG1033 278 PPL-LLAIGIDYGIHLLNRYREERR--KGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGV 354
|
250
....*....|....*.
gi 516457348 266 LAgtyssIYIANVVLI 281
Cdd:COG1033 355 LL-----AFLTSLTLL 365
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
90-280 |
4.63e-07 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 51.16 E-value: 4.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 90 DPQLGHQVAEALQKVGGDNPAAVKRVEFVGPQVGEELRDQGGLGMLMA--LVGIMIYLAFRFqwkFGVGAIVSLIHDVVV 167
Cdd:PRK13023 240 DLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAalVVGLFMVLSYGI---LGVIALVALVVNIII 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 168 TVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRvlRKATLIENINISTTQTLLRTMATSISTLLAIAALM 247
Cdd:PRK13023 317 LTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRR--KGYSVVQAMESGFYRALSTIVDANLTTLIAALVLF 394
|
170 180 190
....*....|....*....|....*....|...
gi 516457348 248 IFGGDNLWGFSLALFIGVLAGTYSSIYIANVVL 280
Cdd:PRK13023 395 LLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
131-248 |
2.50e-04 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 42.54 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 131 GLGMLMALVGIMIYLAFRfQWKFGVGAIVSLIHDVVVTVGILAYFQITFDL-TVLAAVLAiIGYSLNDTIVVFDRVRENF 209
Cdd:COG1033 610 SLLLALLLIFLLLLLAFR-SLRLGLISLIPNLLPILLTFGLMGLLGIPLNIaTAVVASIA-LGIGVDYTIHFLSRYREER 687
|
90 100 110
....*....|....*....|....*....|....*....
gi 516457348 210 RvlRKATLIENINISTTQTLLRTMATSISTLLAIAALMI 248
Cdd:COG1033 688 R--KGGDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLF 724
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
11-105 |
3.99e-04 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 41.78 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 11 RNIAFGVTVLLTVLALFSWFH-----KGLNYGLDFTGGTLIELTYEKP------ADVTQVREE-LVKAGYHEAIVQSFGa 78
Cdd:PRK08343 12 RVLLLIVLVLASIVAIFPPGGgpggfTNLQYGLDLSGGSWIQLKLEGPvtqetmDLVVEILESrLNALGLKDIKVYPVG- 90
|
90 100
....*....|....*....|....*..
gi 516457348 79 TTDLLVRMPGEDPQlghQVAEALQKVG 105
Cdd:PRK08343 91 DQYIVVEVPGVDAD---TAKEIIEKQG 114
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
109-268 |
1.02e-03 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 40.24 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 109 PAAVK--RVEFVGPQVGEELRDQGGLGMLMAL--VGIMIYLAFRfQWKFGVGAIVSLIHDVVVTVGILAYFQITFDLTVL 184
Cdd:PRK08343 240 PVKLDieGSGSVSPSLGEQFKKGSLIAGLLALlaVALVVFLRYR-EPRIALPMVITSLSEVIIILGFAALIGWQLDLASI 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516457348 185 AAVLAIIGYSLNDTIVVFDRVRENFRVLRKATLIENInistTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIG 264
Cdd:PRK08343 319 AGIIAVIGTGVDDLIIITDEVLHEGKVPSRKVFLSRI----KRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILG 394
|
....
gi 516457348 265 VLAG 268
Cdd:PRK08343 395 VLIG 398
|
|
| |
