|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
1-638 |
0e+00 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 1166.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 1 MTVQTQDTGKAVSAVIAQSWHRCSKFMQRETWQTPHQAQGLTFDSICRRKTALLTIGQAALEDAWEFMDGRPCALFILDE 80
Cdd:PRK11388 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKALLTLGQAALEDAWEYMADRECALLILDE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 81 TACILSRCGEPQTLAQLADLGFRDGSYCAESIIGTCALSLAAMQGQPINTAGDRHFKQALQPWSFCSTPVFDNHGRLFGS 160
Cdd:PRK11388 81 TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQALHNWAFCATPVFDSKGRLTGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 161 ISLCCLVEHQSSADLSLTLAIAREVGNSLLTDSLLAESNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNVQAASLLHLDA 240
Cdd:PRK11388 161 IALACPVEQTSAADLPLTLSIAREVGNLLLTDSLLAESNRHLNQLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 241 QASQGKNIADLVTLPALLRRAIKHARGLNHVEVTFESQHQFIDAVITLKPIVEAQGNSFILLLHPVEQMRQLMTSQLGKV 320
Cdd:PRK11388 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEVTFESQGQFIDAVITLKPIIEGQGTSFILLLHPVEQMRQLMTSQLGKV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 321 SHTFEQMSADDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGSA 400
Cdd:PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 401 PTDDENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQ 480
Cdd:PRK11388 401 RTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQ 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 481 LYYALHSFEIVIPPLRARRNSIPSLVHNRLKSLEKRFSSRLKVDDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIR 560
Cdd:PRK11388 481 LYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIR 560
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516511290 561 LSNLPEYLFSDRPGVDSGSSLLPASLTFSAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYDIDASQFKRK 638
Cdd:PRK11388 561 LSDLPEHLFTEQATDDVSATRLSTSLSLAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGIDAGQFKRR 638
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
11-629 |
2.88e-171 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 502.12 E-value: 2.88e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 11 AVSAVIAQSWHRCSKF-MQRETWQTPHQAQGLTFDSICRRKTALLTIGQAALEDAWEFMDGRPCALFILDETACILSRCG 89
Cdd:COG3284 23 GVRPLIARSWQRCREYgLDPDRPPAPRVLSGAELRELRERNEELLRAARPVLERLYEQLAGSGSVVLLTDADGVILDTLG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 90 EPQTLAQLADLGFRDGSYCAESIIGTCALSLAAMQGQPINTAGDRHFKQALQPWSFCSTPVFDNHGRLFGSISLCCLVEH 169
Cdd:COG3284 103 DPRFLDRARRVGLAPGADWSEEARGTNAIGTALAEGRPVTVHGAEHFLEANHGLTCSAAPIFDPDGRLLGVLDISGPARS 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 170 QSSADLSLTLAIAREVGNSLLTDSLLAESNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNVQAASLLHLDAQASQGKNIA 249
Cdd:COG3284 183 SQPHTLALVRAAARRIENRLFLRSFRREWRLRLHFLPEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPLE 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 250 DL--VTLPALLRRAikharglnhvevtfesqhqfIDAVITLKPIVEAQGNSF--ILLLHPVEQMRQLMTSQlGKVSHTFE 325
Cdd:COG3284 263 ELfgLDLEALPDGA--------------------RRAPASPRPLRLRDGRRLgaLLRLRPARRAARAAPAG-APAPAALA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 326 QMSADDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGSAP---- 401
Cdd:COG3284 322 ALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPgaft 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 402 TDDENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQL 481
Cdd:COG3284 402 GARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDL 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 482 YYALHSFEIVIPPLRArRNSIPSLVHNRLKSLEKRFsSRLKVDDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIRL 561
Cdd:COG3284 482 YYRLNGLTLTLPPLRE-REDLPALIEHLLRELAAGR-GPLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITV 559
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516511290 562 SNLPEYLFSDRPGVDSGSSllPASLTFSAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYD 629
Cdd:COG3284 560 EDLPDELRAELAAAAPAAA--APLTSLEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
195-631 |
6.17e-103 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 320.18 E-value: 6.17e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 195 LAESNRHLNQmygLLESMDDGVMAWNEQGVLQFLNVQAASLLHLDAQASQGKNIADLVTlPALLRRAIKhaRGLNHVEVT 274
Cdd:COG3829 6 LKELEEELEA---ILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELIP-NSPLLEVLK--TGKPVTGVI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 275 FESQHQFIDAVITLKPIVEaQGN--SFILLLHPVEQMRQLM-------TSQLGKVSHTFEQMSADDPETRRLIHFGRQAA 345
Cdd:COG3829 80 QKTGGKGKTVIVTAIPIFE-DGEviGAVETFRDITELKRLErklreeeLERGLSAKYTFDDIIGKSPAMKELLELAKRVA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 346 RGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVL-----GQD---FMGSaptdDENGRLSRLELANG 417
Cdd:COG3829 159 KSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLeselfGYEkgaFTGA----KKGGKPGLFELADG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 418 GTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPLRA 497
Cdd:COG3829 235 GTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRE 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 498 RRNSIPSLVHNRLKSLEKRFSSRLK-VDDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIRLSNLPEYLFSDRPgVD 576
Cdd:COG3829 315 RKEDIPLLAEHFLEKFNKKYGKNIKgISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAE-AA 393
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 516511290 577 SGSSLLPASLTFSAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYDID 631
Cdd:COG3829 394 SAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
325-629 |
4.22e-77 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 251.81 E-value: 4.22e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 325 EQMSADDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMG---SAP 401
Cdd:COG2204 131 SGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGhekGAF 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 402 TDDENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQL 481
Cdd:COG2204 211 TGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 482 YYALHSFEIVIPPLRARRNSIPSLVHNRLKSLEKRFSSRLKVDDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIRL 561
Cdd:COG2204 291 YYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITA 370
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516511290 562 SNLPEYLfsdrpgvdsgssllpasltfSAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYD 629
Cdd:COG2204 371 EDLPEAL--------------------EEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
198-586 |
2.39e-55 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 196.18 E-value: 2.39e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 198 SNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNVQAASLLHLDAQASQGKNIADLVTLPALLR-------RAIKHARGLNH 270
Cdd:COG3283 75 SEREHLELDALLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIGQPLSELLKGFNFSRwlesnepRPQSERVVING 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 271 ---------VEVTFESQHQ-FIDAVITLKPIVEAQgnsfilllhpvEQMRQLMTSQLGkvshTFEQMSADDPETRRLIhf 340
Cdd:COG3283 155 qdyladilpIYLPDEEGKSiLAGAVVTLKSAARLG-----------EQLQALQVNDDS----GFDHIVASSPKMRQVI-- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 341 gRQAARGGF---PVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGSAPTDDENGRLSR---LEL 414
Cdd:COG3283 218 -RQAKKMAMldaPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAFGNAREGKkglFEQ 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 415 ANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPP 494
Cdd:COG3283 297 ANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPP 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 495 LRARRNSIPSLVHNRLksleKRFSSRL-----KVDDDALAQLVAYSWPGNDFELNSVIENiAIS-SDNGHIRLS--NLPE 566
Cdd:COG3283 377 LRERKSDILPLAEHFV----ARFSQQLgrprpRLSPDLVDFLQSYPWPGNVRQLENALYR-AVSlLEGDELTPEdlQLPE 451
|
410 420
....*....|....*....|
gi 516511290 567 YlfsdRPGVDSGSSLLPASL 586
Cdd:COG3283 452 Y----AASAGLLDDLLEGSL 467
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
303-630 |
5.35e-49 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 177.25 E-value: 5.35e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 303 LHPVEQMRQLMTSQLGKVShtFEQMSADDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAV 382
Cdd:TIGR02915 119 LYTLETENRRLQSALGGTA--LRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAI 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 383 NCQLYADSVLGQDFMG---SAPTDDENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVK 459
Cdd:TIGR02915 197 NCAAIPENLLESELFGyekGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVR 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 460 VIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSLVHNRLksleKRFSSRLK-----VDDDALAQLVAY 534
Cdd:TIGR02915 277 IVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFL----ERFARELKrktkgFTDDALRALEAH 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 535 SWPGNDFELNSVIENIAISSDNGHIRLSNLPeylFSDRPGvDSGSSLLPASLTFSAIEKEAIIHAARVTSGRVQEMSQLL 614
Cdd:TIGR02915 353 AWPGNVRELENKVKRAVIMAEGNQITAEDLG---LDARER-AETPLEVNLREVRERAEREAVRKAIARVDGNIARAAELL 428
|
330
....*....|....*.
gi 516511290 615 NIGRTTLWRKMKQYDI 630
Cdd:TIGR02915 429 GITRPTLYDLMKKHGI 444
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
331-490 |
2.17e-48 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 166.81 E-value: 2.17e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 331 DPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGSAP---TDDENG 407
Cdd:pfam00158 5 SPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKgafTGADSD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 408 RLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHS 487
Cdd:pfam00158 85 RKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYYRLNV 164
|
...
gi 516511290 488 FEI 490
Cdd:pfam00158 165 IPI 167
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
330-635 |
1.15e-47 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 175.67 E-value: 1.15e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 330 DDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMG---SAPTDDEN 406
Cdd:TIGR01817 201 KSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGhekGAFTGAIA 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 407 GRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALH 486
Cdd:TIGR01817 281 QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 487 SFEIVIPPLRARRNSIPSLVHNRLKSLEKRFSSRLKVDDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIRLS---- 562
Cdd:TIGR01817 361 VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSdfsc 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 563 ----NLPEYLFSDRPGVDSGSSLL--------PASLTFSA---------IEKEAIIhAARVTSGRVQ-EMSQLLNIGRTT 620
Cdd:TIGR01817 441 qsgqCLSPMLAKTCPHGHISIDPLagttpphsPASAALPGepglsgptlSERERLI-AALEQAGWVQaKAARLLGMTPRQ 519
|
330
....*....|....*
gi 516511290 621 LWRKMKQYDIDASQF 635
Cdd:TIGR01817 520 VGYALRKLNIEMKKL 534
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
351-631 |
1.77e-46 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 170.80 E-value: 1.77e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 351 VLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMG---SAPTDDENGRLSRLELANGGTLFLEKIEY 427
Cdd:PRK11361 169 VLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGhekGAFTGAQTLRQGLFERANEGTLLLDEIGE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 428 LAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSLVH 507
Cdd:PRK11361 249 MPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLAN 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 508 NRLksleKRFSSR-----LKVDDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIRLSNLPEYLFSDRPGVdSGSSLL 582
Cdd:PRK11361 329 HFL----QKFSSEnqrdiIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNA-GEVKTA 403
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 516511290 583 PAS-----LTFSAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYDID 631
Cdd:PRK11361 404 PVGernlkEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
322-627 |
5.03e-46 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 171.06 E-value: 5.03e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 322 HTFEQMSADDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNE--------SERAGGPYIAVNCQLYADSVLG 393
Cdd:PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGAIAESLLE 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 394 QD--------FMGSAptddENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTT 465
Cdd:PRK15424 296 AElfgyeegaFTGSR----RGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 466 VDLANLVEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSLVHNRLK----SLEKRFS-SRLKVDDDALAQLVAYSWPGND 540
Cdd:PRK15424 372 CDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKqslaALSAPFSaALRQGLQQCETLLLHYDWPGNV 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 541 FELNSVIENIAIS-SDNGHIRLSnlPEYLFSDRPGVDSGSSLLPASLTFSAIEKEAIIHAarvtSGRVQEMSQLLNIGRT 619
Cdd:PRK15424 452 RELRNLMERLALFlSVEPTPDLT--PQFLQLLLPELARESAKTPAPRLLAATLQQALERF----NGDKTAAANYLGISRT 525
|
....*...
gi 516511290 620 TLWRKMKQ 627
Cdd:PRK15424 526 TLWRRLKA 533
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
330-631 |
6.29e-45 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 163.09 E-value: 6.29e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 330 DDPETRRLIHFGRQAArggfpVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCqlyadsvlgqdfmgSAptddengrl 409
Cdd:COG3604 102 SEEDLRLLETLASLAA-----VAILGETGTGKELVANAIHELSPRADKPFVKVNC--------------AA--------- 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 410 srlelanggtlflekieylapeLQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFE 489
Cdd:COG3604 154 ----------------------LPESLLESLQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFP 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 490 IVIPPLRARRNSIPSLVHNRLKSLEKRFSSR-LKVDDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIRLSNLPEyl 568
Cdd:COG3604 212 IRLPPLRERREDIPLLAEHFLEKFSRRLGKPiLRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAP-- 289
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 516511290 569 fSDRPGVDsgssllpasltfsAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYDID 631
Cdd:COG3604 290 -GSREALE-------------EVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
311-627 |
1.57e-42 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 159.43 E-value: 1.57e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 311 QLMTSQLGKVSHTFEQMSADDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADS 390
Cdd:PRK10365 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 391 VLGQDFMG---SAPTDDENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVD 467
Cdd:PRK10365 205 LLESELFGhekGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 468 LANLVEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSLVHNRLKSLEKRFSSRLK-VDDDALAQLVAYSWPGNDFELNSV 546
Cdd:PRK10365 285 LAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKgFTPQAMDLLIHYDWPGNIRELENA 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 547 IENIAISSDNGHIRLSNLPEYLFSDRPGVDSGSSLLPasltFSAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMK 626
Cdd:PRK10365 365 VERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP----LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440
|
.
gi 516511290 627 Q 627
Cdd:PRK10365 441 R 441
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
351-631 |
1.59e-39 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 154.60 E-value: 1.59e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 351 VLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMG---SAPTDDENGRLSRLELANGGTLFLEKIEY 427
Cdd:PRK15429 402 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGherGAFTGASAQRIGRFELADKSSLFLDEVGD 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 428 LAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSLVh 507
Cdd:PRK15429 482 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLV- 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 508 nrlKSLEKRFSSRLKVDDDA-----LAQLVAYSWPGNDFELNSVIENIAISSDNGHIRLSnLPEYlfsdRPGVDSGSSLL 582
Cdd:PRK15429 561 ---KAFTFKIARRMGRNIDSipaetLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDI----TLPEPETPPAA 632
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 516511290 583 PASLTFSAIEKEAIIHAARVTSGRV---QEMSQLLNIGRTTLWRKMKQYDID 631
Cdd:PRK15429 633 TVVAQEGEDEYQLIVRVLKETNGVVagpKGAAQRLGLKRTTLLSRMKRLGID 684
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
349-547 |
1.15e-37 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 146.86 E-value: 1.15e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 349 FPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMG---SAPTDDENGRLSRLELANGGTLFLEKI 425
Cdd:PRK05022 211 LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGhvkGAFTGAISNRSGKFELADGGTLFLDEI 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 426 EYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSL 505
Cdd:PRK05022 291 GELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLL 370
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 516511290 506 VHNRLKSLEKRFS-SRLKVDDDALAQLVAYSWPGNDFELNSVI 547
Cdd:PRK05022 371 AGYFLEQNRARLGlRSLRLSPAAQAALLAYDWPGNVRELEHVI 413
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
345-631 |
3.46e-37 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 144.63 E-value: 3.46e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 345 ARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMG---SAPTDDENGRLSRLELANGGTLF 421
Cdd:PRK10923 158 SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGhekGAFTGANTIRQGRFEQADGGTLF 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 422 LEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPLRARRNS 501
Cdd:PRK10923 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERRED 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 502 IPSLVHNRLKSLEKRFSSRLKV-DDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIRLSNLPEYLF-SDRPgvDSGS 579
Cdd:PRK10923 318 IPRLARHFLQVAARELGVEAKLlHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFeSTVP--ESTS 395
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 516511290 580 SLLPAS----LTFSA------------------IEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYDID 631
Cdd:PRK10923 396 QMQPDSwatlLAQWAdralrsghqnllseaqpeLERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
325-636 |
7.48e-37 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 143.05 E-value: 7.48e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 325 EQMSADDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGSAP--- 401
Cdd:PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARgaf 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 402 TDDENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQL 481
Cdd:PRK15115 214 TGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 482 YYALHSFEIVIPPLRARRNSIPSLVHNRLKSLEKR-------FSSrlkvddDALAQLVAYSWPGNDFELNSVIEN-IAIS 553
Cdd:PRK15115 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERhkpfvraFST------DAMKRLMTASWPGNVRQLVNVIEQcVALT 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 554 SDnghirlSNLPEYLFSDrpGVDSGSSLLPaslTFSAIEKEAIIHAAR----VTSGRVQEMSQLLNIGRTTLWRKMKQYD 629
Cdd:PRK15115 368 SS------PVISDALVEQ--ALEGENTALP---TFVEARNQFELNYLRkllqITKGNVTHAARMAGRNRTEFYKLLSRHE 436
|
....*..
gi 516511290 630 IDASQFK 636
Cdd:PRK15115 437 LDANDFK 443
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
350-548 |
2.61e-36 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 138.97 E-value: 2.61e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 350 PVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMG---SAPTDDENGRLSRLELANGGTLFLEKIE 426
Cdd:TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGheaGAFTGAQKRHQGRFERADGGTLFLDELA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 427 YLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALhSFEIV-IPPLRARRNSIPSL 505
Cdd:TIGR02974 104 TASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRL-AFDVItLPPLRERQEDIMLL 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 516511290 506 VhnrlksleKRFSSRLKVD----------DDALAQLVAYSWPGNDFELNSVIE 548
Cdd:TIGR02974 183 A--------EHFAIRMARElglplfpgftPQAREQLLEYHWPGNVRELKNVVE 227
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
198-586 |
6.83e-36 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 141.75 E-value: 6.83e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 198 SNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNVQAASLLHLDAQASQGKNIADLVTLPALLR-----RAIKHA-----RG 267
Cdd:PRK10820 75 SEREHRALSALLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLINGFNFLRwlesePQDSHNehvviNG 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 268 LNHV-EVT------FESQHQFIDAVITLKPIVEaqgnsfilllhpveqmrqlMTSQLGKVS----HTFEQMSADDPETRR 336
Cdd:PRK10820 155 QDFLmEITpvylqdENDQHVLVGAVVMLRSTAR-------------------MGRQLQNLAvnddSAFSQIVAVSPKMRQ 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 337 LIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGSAPTDDEN---GRLSRLE 413
Cdd:PRK10820 216 VVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNaleGKKGFFE 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 414 LANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIP 493
Cdd:PRK10820 296 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLP 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 494 PLRARRNSIPSLVhnrlKSLEKRFS-----SRLKVDDDALAQLVAYSWPGNDFELNSVIENIAISSDNGHIRLSN--LPE 566
Cdd:PRK10820 376 PLRDRPQDIMPLT----ELFVARFAdeqgvPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDilLPD 451
|
410 420
....*....|....*....|
gi 516511290 567 YlfsdRPGVDSGSSLLPASL 586
Cdd:PRK10820 452 Y----DAAVAVGEDAMEGSL 467
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
350-548 |
1.35e-29 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 119.78 E-value: 1.35e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 350 PVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMG---SAPTDDENGRLSRLELANGGTLFLEKIE 426
Cdd:PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGheaGAFTGAQKRHPGRFERADGGTLFLDELA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 427 yLAPEL-QSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALhSFEIV-IPPLRARRNSIPS 504
Cdd:PRK11608 111 -TAPMLvQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRL-AFDVVqLPPLRERQSDIML 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 516511290 505 LVHN-------RLK-SLEKRFSSRlkvdddALAQLVAYSWPGNDFELNSVIE 548
Cdd:PRK11608 189 MAEHfaiqmcrELGlPLFPGFTER------ARETLLNYRWPGNIRELKNVVE 234
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
343-495 |
1.69e-18 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 82.39 E-value: 1.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 343 QAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCqlyadsvlgqdfmGSAPtddengrLSRLELANGGTLFL 422
Cdd:pfam14532 16 QAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYL-------------AHAP-------LELLEQAKGGTLYL 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 516511290 423 EKIEYLAPELQSALLQVIkqgvltrldaRRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPL 495
Cdd:pfam14532 76 KDIADLSKALQKGLLLLL----------AKAEGYRVRLVCTSSKDLPQLAAAGLFDEQLYFELSALRLHVPPL 138
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
335-494 |
1.71e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 82.58 E-value: 1.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 335 RRLIHFGRQAARG--GFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGSAPTDDENGrlsRL 412
Cdd:cd00009 4 EEAIEALREALELppPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE---LA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 413 ELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDarrliPVDVKVIATTTVDLANLVEQNRFSRqlyyalHSFEIVI 492
Cdd:cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPLLGDLDRALYDR------LDIRIVI 149
|
..
gi 516511290 493 PP 494
Cdd:cd00009 150 PL 151
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
347-597 |
3.10e-15 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 79.38 E-value: 3.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 347 GGFPVLLCGEEGVGKELLSQAIHN---ESER--AGGPYIAVNCQLYADS---VLGQDF---MGS---APTDDEnGrLsrL 412
Cdd:COG1221 129 KGLHTLILGPTGVGKSFFAELMYEyaiEIGVlpEDAPFVVFNCADYANNpqlLMSQLFgyvKGAftgADKDKE-G-L--I 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 413 ELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRL-DARRLIPVDVKVIATTTVDL-ANLveqnrfsrqlyyaLHSF-- 488
Cdd:COG1221 205 EKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLgETEKTRKANVRIIFATTEDPeSSL-------------LKTFlr 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 489 ----EIVIPPLRARrnSIP---SLVHNRLKSLEKRFSSRLKVDDDALAQLVAYSWPGNDFELNSVI---------ENIAI 552
Cdd:COG1221 272 ripmVIKLPSLEER--SLEerlELIKHFFKEEAKRLNKPIKVSKEVLKALLLYDCPGNIGQLKSDIqlacakaflNYITN 349
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 516511290 553 SSDNGHIRLSNLPEY-------LFSDRPGVDSGSSLLPASLTFSAIEKEAII 597
Cdd:COG1221 350 KKEEIEITLSDLPENvkkgllkLKENREELDKLSEYLEEYLIISPDTEKKLI 401
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
203-306 |
2.21e-12 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 63.98 E-value: 2.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 203 NQMYGLLESMDDGVMAWNEQGVLQFLNVQAASLLHLDAQASQGKNIADLV------TLPALLRRAIKHARGLNHVEVTFE 276
Cdd:pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIpeeddaEVAELLRQALLQGEESRGFEVSFR 80
|
90 100 110
....*....|....*....|....*....|...
gi 516511290 277 -SQHQFIDAVITLKPIVEAQGN--SFILLLHPV 306
Cdd:pfam00989 81 vPDGRPRHVEVRASPVRDAGGEilGFLGVLRDI 113
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
195-312 |
4.07e-11 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 64.87 E-value: 4.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 195 LAESNRHLNQmygLLESMDDGVMAWNEQGVLQFLNVQAASLLHLDAQASQGKNIADLV----TLPALLRRAIKHARGLNH 270
Cdd:COG3852 2 LRESEELLRA---ILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFpedsPLRELLERALAEGQPVTE 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 516511290 271 VEVTFES-QHQFIDAVITLKPIVEAQGN-SFILLLHPVEQMRQL 312
Cdd:COG3852 79 REVTLRRkDGEERPVDVSVSPLRDAEGEgGVLLVLRDITERKRL 122
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
591-627 |
6.97e-10 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 54.32 E-value: 6.97e-10
10 20 30
....*....|....*....|....*....|....*..
gi 516511290 591 IEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQ 627
Cdd:pfam02954 4 VEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
348-483 |
3.24e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 3.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 348 GFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGSAPTDDENG--------RLSRLELANGGT 419
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGsgelrlrlALALARKLKPDV 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516511290 420 LFLEKIEYLAPELQSALLQVIkqgVLTRLDARRLIPVDVKVIATTT--VDLANLVEQNRFSRQLYY 483
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVL 144
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
171-311 |
4.36e-05 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 46.49 E-value: 4.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 171 SSADLSLTLAIAR--EVGnsLLTDSL------LAESNRHLNQMYGLLE----SMDDGVMAWNEQGVLQFLNVQAASLLHL 238
Cdd:COG5000 48 AAGDLSVRLPVTGddEIG--ELARAFnrmtdqLKEQREELEERRRYLEtileNLPAGVIVLDADGRITLANPAAERLLGI 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516511290 239 DAQASQGKNIADLV---TLPALLRRAIKHARGLNhVEVTFESQHQFIDAVITLkpiveaQGNSFILLLHPVEQMRQ 311
Cdd:COG5000 126 PLEELIGKPLEELLpelDLAELLREALERGWQEE-IELTRDGRRTLLVRASPL------RDDGYVIVFDDITELLR 194
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
53-189 |
8.81e-05 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 42.85 E-value: 8.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 53 LLTIGQAALEDAWEFMDGRPCALFILDETACILSRCGEPQTLAQLADLGFRDGSYCAESiigtcalslaamqGQPIN--- 129
Cdd:pfam01590 2 LEEILQTILEELRELLGADRCALYLPDADGLEYLPPGARWLKAAGLEIPPGTGVTVLRT-------------GRPLVvpd 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516511290 130 TAGDRHFKQAL------QPWSFCSTPVFDnHGRLFGSISLCCLVEHQSSADLSLTLAIAREVGNSL 189
Cdd:pfam01590 69 AAGDPRFLDPLlllrnfGIRSLLAVPIID-DGELLGVLVLHHPRPPFTEEELELLEVLADQVAIAL 133
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
193-315 |
1.63e-04 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 44.57 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 193 SLLAESnRHLNQMygLLESMDDGVMAWNEQGVLQFLNVQAASLLHLDAQASQGKNIADLVTLPA----LLRRAIKHARGL 268
Cdd:PRK11360 255 QALRET-RSLNEL--ILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELFPPNTpfasPLLDTLEHGTEH 331
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 516511290 269 NHVEVTFESQHQFIDAVITLKPIVEAQGNSF--ILLLHPVEQMRQLMTS 315
Cdd:PRK11360 332 VDLEISFPGRDRTIELSVSTSLLHNTHGEMIgaLVIFSDLTERKRLQRR 380
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
142-291 |
2.78e-04 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 43.09 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 142 PWSFCSTPVFDNHGRLFGSIslcclvehqssadlsltlAIAREVGNSLLTDSLLAESNRHLNQmygLLESMDDGVMAWNE 221
Cdd:COG2202 97 WVELSISPVRDEDGEITGFV------------------GIARDITERKRAEEALRESEERLRL---LVENAPDGIFVLDL 155
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 222 QGVLQFLNVQAASLLHLDAQASQGKNIADLVTLPALLRRAIKHARGLNHVEVTFESQHQFIDAVITLKPI 291
Cdd:COG2202 156 DGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEDRERLLELLRRLLEGGRESYELELRLKDGDGRWVWV 225
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
208-252 |
4.03e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 38.92 E-value: 4.03e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 516511290 208 LLESMDDGVMAWNEQGVLQFLNVQAASLLHLDAQASQGKNIADLV 252
Cdd:smart00091 6 ILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELI 50
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
350-464 |
1.66e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 39.20 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 350 PVLLCGEEGVGK----ELLSQAIHNeseragGPYIAVncQLYADSVlGQDFMGSAPTDDENGRLSRLELA----NGGTLF 421
Cdd:pfam07728 1 GVLLVGPPGTGKtelaERLAAALSN------RPVFYV--QLTRDTT-EEDLFGRRNIDPGGASWVDGPLVraarEGEIAV 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 516511290 422 LEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPV---DVKVIATT 464
Cdd:pfam07728 72 LDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATM 117
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
351-482 |
1.99e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 38.73 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516511290 351 VLLCGEEGVGKELLSQAIHNEserAGGPYIAVNCqlyadSVLGQDFMGSAPtDDENGRLSRLELANGGTLFLEKIEYLAP 430
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKE---LGAPFIEISG-----SELVSKYVGESE-KRLRELFEAAKKLAPCVIFIDEIDALAG 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 516511290 431 ELQSALLQVIKQGV---LTRLDARRLIPVDVKVIATTT----VDLANLveqNRFSRQLY 482
Cdd:pfam00004 72 SRGSGGDSESRRVVnqlLTELDGFTSSNSKVIVIAATNrpdkLDPALL---GRFDRIIE 127
|
|
| |
