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Conserved domains on  [gi|516812806|ref|WP_018112646|]
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helix-turn-helix domain-containing protein [Clostridioides difficile]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10622089)

helix-turn-helix domain-containing protein functions in DNA binding; HTH domains are often found in transcriptional regulators

Gene Ontology:  GO:0003677|GO:0006355|GO:0003700
PubMed:  15808743|19076237|10473770|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 43-85 1.57e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


:

Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 33.25  E-value: 1.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 516812806  43 KPKKFTDNEIREIKNDLDNGLSIRKCAERWDCSTNVIMK-IKQN 85
Cdd:pfam13936  1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISReLRRN 44
 
Name Accession Description Interval E-value
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 43-85 1.57e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 33.25  E-value: 1.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 516812806  43 KPKKFTDNEIREIKNDLDNGLSIRKCAERWDCSTNVIMK-IKQN 85
Cdd:pfam13936  1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISReLRRN 44
 
Name Accession Description Interval E-value
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 43-85 1.57e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 33.25  E-value: 1.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 516812806  43 KPKKFTDNEIREIKNDLDNGLSIRKCAERWDCSTNVIMK-IKQN 85
Cdd:pfam13936  1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISReLRRN 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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