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Conserved domains on  [gi|516924211|ref|WP_018168153|]
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MULTISPECIES: hypothetical protein [unclassified Thioalkalivibrio]

Protein Classification

YybS family protein( domain architecture ID 8210)

YybS family protein is a DUF2232 domain-containing protein similar to Bacillus subtilis protein YybS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2232 super family cl01728
Predicted membrane protein (DUF2232); This family of bacterial proteins are multi-pass ...
 232-298 7.93e-05

Predicted membrane protein (DUF2232); This family of bacterial proteins are multi-pass membrane proteins with up to 10 (2 x 4/5) transmembrane regions. The exact function of this potential pore molecule is not known, but in many instances it is associated with ABC-transporter-like domains, implying that it is part of a secretion system that uses energy.


The actual alignment was detected with superfamily member COG4241:

Pssm-ID: 470315  Cd Length: 318  Bit Score: 43.67  E-value: 7.93e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516924211 232 LAFILAVLFFLQGIALMHALTFRQGMSSFWLVgMYVLLALAMPQMFLLLATIGVIDAWADIRSRLGP 298
Cdd:COG4241  251 LLVILSFLFLLQGLSFIFYYLKKKKLPKFVRI-LIVILLILLPLLLYLVRILGIIDLGFDLRKRIKK 316
 
Name Accession Description Interval E-value
YybS COG4241
Uncharacterized conserved protein YybS, DUF2232 family [Function unknown];
232-298 7.93e-05

Uncharacterized conserved protein YybS, DUF2232 family [Function unknown];


Pssm-ID: 443383  Cd Length: 318  Bit Score: 43.67  E-value: 7.93e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516924211 232 LAFILAVLFFLQGIALMHALTFRQGMSSFWLVgMYVLLALAMPQMFLLLATIGVIDAWADIRSRLGP 298
Cdd:COG4241  251 LLVILSFLFLLQGLSFIFYYLKKKKLPKFVRI-LIVILLILLPLLLYLVRILGIIDLGFDLRKRIKK 316
 
Name Accession Description Interval E-value
YybS COG4241
Uncharacterized conserved protein YybS, DUF2232 family [Function unknown];
232-298 7.93e-05

Uncharacterized conserved protein YybS, DUF2232 family [Function unknown];


Pssm-ID: 443383  Cd Length: 318  Bit Score: 43.67  E-value: 7.93e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516924211 232 LAFILAVLFFLQGIALMHALTFRQGMSSFWLVgMYVLLALAMPQMFLLLATIGVIDAWADIRSRLGP 298
Cdd:COG4241  251 LLVILSFLFLLQGLSFIFYYLKKKKLPKFVRI-LIVILLILLPLLLYLVRILGIIDLGFDLRKRIKK 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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