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Conserved domains on  [gi|517241818|ref|WP_018430636|]
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MULTISPECIES: TIGR02300 family protein [Hyphomicrobiales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4530 COG4530
Uncharacterized conserved protein [Function unknown];
1-36 1.27e-22

Uncharacterized conserved protein [Function unknown];


:

Pssm-ID: 443598  Cd Length: 36  Bit Score: 83.32  E-value: 1.27e-22
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 517241818   1 MAKPELGTKRVDPETGRKFYDLNKDPIVSPYTGKTY 36
Cdd:COG4530    1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGTEF 36
FYDLN_acid pfam09538
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a ...
 1-81 8.21e-18

Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


:

Pssm-ID: 430674 [Multi-domain]  Cd Length: 108  Bit Score: 72.77  E-value: 8.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517241818    1 MAKPELGTKRVDPETGRKFYDLNKDPIVSPYTGKTYARSYFDDGKISALLEEEEEVEAKELDSEDE--GAEVVSLEDADE 78
Cdd:pfam09538   1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGTVFPPESVLRSRRARAEAAAAAPKAAAEDDEEDdvVAEDVSDEDADE 80


                  ...
gi 517241818   79 EAK 81
Cdd:pfam09538  81 EED 83
 
Name Accession Description Interval E-value
COG4530 COG4530
Uncharacterized conserved protein [Function unknown];
1-36 1.27e-22

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443598  Cd Length: 36  Bit Score: 83.32  E-value: 1.27e-22
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 517241818   1 MAKPELGTKRVDPETGRKFYDLNKDPIVSPYTGKTY 36
Cdd:COG4530    1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGTEF 36
FYDLN_acid pfam09538
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a ...
 1-81 8.21e-18

Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


Pssm-ID: 430674 [Multi-domain]  Cd Length: 108  Bit Score: 72.77  E-value: 8.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517241818    1 MAKPELGTKRVDPETGRKFYDLNKDPIVSPYTGKTYARSYFDDGKISALLEEEEEVEAKELDSEDE--GAEVVSLEDADE 78
Cdd:pfam09538   1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGTVFPPESVLRSRRARAEAAAAAPKAAAEDDEEDdvVAEDVSDEDADE 80


                  ...
gi 517241818   79 EAK 81
Cdd:pfam09538  81 EED 83
FYDLN_acid TIGR02300
TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif ...
 1-125 5.55e-16

TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


Pssm-ID: 131353  Cd Length: 129  Bit Score: 68.86  E-value: 5.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517241818    1 MAKPELGTKRVDPETGRKFYDLNKDPIVSPYTGKTYARSYFDDGKISALLEEEEEVEAKELDSE-DEGAEVVSLEDADEE 79
Cdd:TIGR02300   1 MAKPDLGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEALKSRRVRADDEKEAVAVKEVDPEiDEAAELVSLEEADEE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 517241818   80 AKGGD---DLPDLDDDDDVDLGDDDDDTFLADEEEEDDDVSDMIGVGDD 125
Cdd:TIGR02300  81 VDPGAptpAGGDDLAEDEDIADDDDDVTFLEDEEDDDIDDEDIIGVSGE 129
 
Name Accession Description Interval E-value
COG4530 COG4530
Uncharacterized conserved protein [Function unknown];
1-36 1.27e-22

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443598  Cd Length: 36  Bit Score: 83.32  E-value: 1.27e-22
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 517241818   1 MAKPELGTKRVDPETGRKFYDLNKDPIVSPYTGKTY 36
Cdd:COG4530    1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGTEF 36
FYDLN_acid pfam09538
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a ...
 1-81 8.21e-18

Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


Pssm-ID: 430674 [Multi-domain]  Cd Length: 108  Bit Score: 72.77  E-value: 8.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517241818    1 MAKPELGTKRVDPETGRKFYDLNKDPIVSPYTGKTYARSYFDDGKISALLEEEEEVEAKELDSEDE--GAEVVSLEDADE 78
Cdd:pfam09538   1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGTVFPPESVLRSRRARAEAAAAAPKAAAEDDEEDdvVAEDVSDEDADE 80


                  ...
gi 517241818   79 EAK 81
Cdd:pfam09538  81 EED 83
FYDLN_acid TIGR02300
TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif ...
 1-125 5.55e-16

TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


Pssm-ID: 131353  Cd Length: 129  Bit Score: 68.86  E-value: 5.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517241818    1 MAKPELGTKRVDPETGRKFYDLNKDPIVSPYTGKTYARSYFDDGKISALLEEEEEVEAKELDSE-DEGAEVVSLEDADEE 79
Cdd:TIGR02300   1 MAKPDLGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEALKSRRVRADDEKEAVAVKEVDPEiDEAAELVSLEEADEE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 517241818   80 AKGGD---DLPDLDDDDDVDLGDDDDDTFLADEEEEDDDVSDMIGVGDD 125
Cdd:TIGR02300  81 VDPGAptpAGGDDLAEDEDIADDDDDVTFLEDEEDDDIDDEDIIGVSGE 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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