NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|517247963|ref|WP_018436781|]
View 

ABC-type transport auxiliary lipoprotein family protein [Paraburkholderia atlantica]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 23-203 5.60e-24

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 93.91  E-value: 5.60e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963  23 VLAAGCAGTSAVVSDVRYDFGP--PPQSAAVSRLPAVKVLEVSAPSVLESDRLTYRLsyaDAQQTAAYANSHWTMMPSQL 100
Cdd:COG3218   17 LLLAGCSSLPAPPPPTLYDLTPplPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRP---DPGQLQYYAGARWADPPPRL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963 101 LTQRLRNALSERG---TVLTGADGVSAP-VLRVDLTEFEQVFASPTdSDGAITARATLM--QGGKVVGQHTFVAHAPAHS 174
Cdd:COG3218   94 LQDLLVEALEASGrfrAVGRPGSGLAADyRLEGELRDFEQDFDGGA-PRAVVELRARLVddRDGRVVASRRFEARVPAAS 172

                        170       180
                 ....*....|....*....|....*....
gi 517247963 175 ADAAGGARALAAASDDLVAQIATWLGSQA 203
Cdd:COG3218  173 ADAAGVVAALNQALDQLLAEIVAWLAAQL 201
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 23-203 5.60e-24

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 93.91  E-value: 5.60e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963  23 VLAAGCAGTSAVVSDVRYDFGP--PPQSAAVSRLPAVKVLEVSAPSVLESDRLTYRLsyaDAQQTAAYANSHWTMMPSQL 100
Cdd:COG3218   17 LLLAGCSSLPAPPPPTLYDLTPplPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRP---DPGQLQYYAGARWADPPPRL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963 101 LTQRLRNALSERG---TVLTGADGVSAP-VLRVDLTEFEQVFASPTdSDGAITARATLM--QGGKVVGQHTFVAHAPAHS 174
Cdd:COG3218   94 LQDLLVEALEASGrfrAVGRPGSGLAADyRLEGELRDFEQDFDGGA-PRAVVELRARLVddRDGRVVASRRFEARVPAAS 172

                        170       180
                 ....*....|....*....|....*....
gi 517247963 175 ADAAGGARALAAASDDLVAQIATWLGSQA 203
Cdd:COG3218  173 ADAAGVVAALNQALDQLLAEIVAWLAAQL 201
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 43-172 7.02e-08

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 50.01  E-value: 7.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963   43 GPPPQSAAVSRLPAVKVLEVSAPSVLESDRLTYRLSyadAQQTAAYANSHWTMMPSQLLTQRLRNALSERG----TVLTG 118
Cdd:pfam03886   2 APAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTG---DGQLQLAENARWAEPLDDQITRALAADLSRRLpsrrVAAFP 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 517247963  119 ADGVSAPVLRVDLTEfeQVFASPTDSDGAITARATLM--QGGKVVGQHTFVAHAPA 172
Cdd:pfam03886  79 WPLGGTPDYRLQVDV--RRFDGRPGGNAVLEARWTLLdaGGGRVLTSRSFRISEPV 132
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 23-203 5.60e-24

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 93.91  E-value: 5.60e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963  23 VLAAGCAGTSAVVSDVRYDFGP--PPQSAAVSRLPAVKVLEVSAPSVLESDRLTYRLsyaDAQQTAAYANSHWTMMPSQL 100
Cdd:COG3218   17 LLLAGCSSLPAPPPPTLYDLTPplPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRP---DPGQLQYYAGARWADPPPRL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963 101 LTQRLRNALSERG---TVLTGADGVSAP-VLRVDLTEFEQVFASPTdSDGAITARATLM--QGGKVVGQHTFVAHAPAHS 174
Cdd:COG3218   94 LQDLLVEALEASGrfrAVGRPGSGLAADyRLEGELRDFEQDFDGGA-PRAVVELRARLVddRDGRVVASRRFEARVPAAS 172

                        170       180
                 ....*....|....*....|....*....
gi 517247963 175 ADAAGGARALAAASDDLVAQIATWLGSQA 203
Cdd:COG3218  173 ADAAGVVAALNQALDQLLAEIVAWLAAQL 201
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 43-172 7.02e-08

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 50.01  E-value: 7.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963   43 GPPPQSAAVSRLPAVKVLEVSAPSVLESDRLTYRLSyadAQQTAAYANSHWTMMPSQLLTQRLRNALSERG----TVLTG 118
Cdd:pfam03886   2 APAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTG---DGQLQLAENARWAEPLDDQITRALAADLSRRLpsrrVAAFP 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 517247963  119 ADGVSAPVLRVDLTEfeQVFASPTDSDGAITARATLM--QGGKVVGQHTFVAHAPA 172
Cdd:pfam03886  79 WPLGGTPDYRLQVDV--RRFDGRPGGNAVLEARWTLLdaGGGRVLTSRSFRISEPV 132
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 23-203 5.31e-03

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 36.51  E-value: 5.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963  23 VLAAGCAGTSavvsDVRY----DFGPPPQSAAVSRLPAVKVLEVSAPSVLESDRLTYRLSyadAQQTAAYANSHWTMMPS 98
Cdd:COG3009   15 LLLAACASSP----PTRYytlpPPAAPAAAAAAAAAPVIEVGPVSLPDYLDRPQIVYRTG---DGRLVIAENHRWAEPLS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517247963  99 QLLTQRLRNALSERgtvLTGADGVSAP---------VLRVDLTEFEqvfaSPTDSDGAITARATLM--QGGKVVGQHTFV 167
Cdd:COG3009   88 DQLTRALAANLAAR---LPGARVAAQPwplagrpdyRLRVDVTRFD----GRPDGQAVLSAQWSLRrgGGGGPLLSRRFS 160

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 517247963 168 AHAPAHSADAAGGARALAAASDDLVAQIATWLGSQA 203
Cdd:COG3009  161 IEEPLAGDGYDALVAALSQALAQLADQIAAALAALP 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH