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Conserved domains on  [gi|517259702|ref|WP_018448520|]
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MULTISPECIES: carbohydrate ABC transporter permease [Rhizobium]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-276 3.68e-91

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 271.20  E-value: 3.68e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   2 RRSVVPTIAHRAAILCYIAFALFPLFWLLKVSVTPNDLLYSEGVRMWPSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTA 81
Cdd:COG0395    8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  82 VTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGLVIVYTAFNVPFATFLMQSFF 161
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 162 DGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNDAATFPVGLLTFVSKFSVDFG 241
Cdd:COG0395  168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWG 247

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 517259702 242 QMMAAGVMALIPAGLFFLLIQRYLVQGLTAGAVKG 276
Cdd:COG0395  248 LLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-276 3.68e-91

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 271.20  E-value: 3.68e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   2 RRSVVPTIAHRAAILCYIAFALFPLFWLLKVSVTPNDLLYSEGVRMWPSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTA 81
Cdd:COG0395    8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  82 VTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGLVIVYTAFNVPFATFLMQSFF 161
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 162 DGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNDAATFPVGLLTFVSKFSVDFG 241
Cdd:COG0395  168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWG 247

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 517259702 242 QMMAAGVMALIPAGLFFLLIQRYLVQGLTAGAVKG 276
Cdd:COG0395  248 LLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
13-276 3.53e-37

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 133.30  E-value: 3.53e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  13 AAILCYIAFALFPLFWLLKVSVTPNDLLYSEgvrMWPSRTTWDHYAFVLRHSA-----------FP--TFFKNSLIVSAS 79
Cdd:PRK10998  18 LLLLGFIALIMFPLLMVIAISLREGNFATGS---LIPEQISWEHWKLALGFSVehadgrvtpppFPvlLWLWNSVKVAGI 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  80 TAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILS------PLHLTNSLTGLVIVYTAfNVPFA 153
Cdd:PRK10998  95 TAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDrlgqyiPFIGLNTHGGVIFAYLG-GIALH 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 154 TFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNDAATFPVGLLTFV 233
Cdd:PRK10998 174 VWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYL 253

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 517259702 234 SKFSVDFGQMMAAGVMALIPAGLFFLLIQRYLVQGLTAGAVKG 276
Cdd:PRK10998 254 NPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 70-252 2.96e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.31  E-value: 2.96e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  70 FKNSLIVSASTAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGL----VIVY 145
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLglpaLILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 146 TAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGndaATF 225
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG---EAP 157

                        170       180
                 ....*....|....*....|....*..
gi 517259702 226 PVGLLTFVSKFSVDFGQMMAAGVMALI 252
Cdd:cd06261  158 GPGTGLLLIFAILFPGDLGVAAAVALI 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 97-269 7.38e-15

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 70.79  E-value: 7.38e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   97 RFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDG 176
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  177 ATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNdaatfPVGLLTFVSKFSVDFGQ---MMAAGVMALIP 253
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP-----GLGLLLIEAILGYDYPEiqgPVLAAALILLL 165

                         170
                  ....*....|....*.
gi 517259702  254 AGLFFLLIQRYLVQGL 269
Cdd:pfam00528 166 LNLLVDILQRLLDPRV 181
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 73-202 7.41e-11

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 60.33  E-value: 7.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   73 SLIVSASTAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLV-----MLVA-----PIFKILSPLHLT--NSLTG 140
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTvlgfyLLIAfgpngPIGKLLELFGISlvFTFTG 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259702  141 LVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGI--AATLGFV 202
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLlaGAVLSFA 146
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-276 3.68e-91

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 271.20  E-value: 3.68e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   2 RRSVVPTIAHRAAILCYIAFALFPLFWLLKVSVTPNDLLYSEGVRMWPSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTA 81
Cdd:COG0395    8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  82 VTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGLVIVYTAFNVPFATFLMQSFF 161
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 162 DGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNDAATFPVGLLTFVSKFSVDFG 241
Cdd:COG0395  168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWG 247

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 517259702 242 QMMAAGVMALIPAGLFFLLIQRYLVQGLTAGAVKG 276
Cdd:COG0395  248 LLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 2-276 2.07e-83

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 251.61  E-value: 2.07e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   2 RRSVVPTIAHRAAILCYIAFALFPLFWLLKVSVTPNDLLYSegVRMWPSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTA 81
Cdd:COG3833    9 RRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYS--SSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  82 VTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGLVIVYTAFNVPFATFLMQSFF 161
Cdd:COG3833   87 IISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWLMKGYF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 162 DGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNDAATFPVGLLTFVSK-FSVDF 240
Cdd:COG3833  167 DTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDqRNTNW 246

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 517259702 241 GQMMAAGVMALIPAGLFFLLIQRYLVQGLTAGAVKG 276
Cdd:COG3833  247 GVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
13-276 3.53e-37

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 133.30  E-value: 3.53e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  13 AAILCYIAFALFPLFWLLKVSVTPNDLLYSEgvrMWPSRTTWDHYAFVLRHSA-----------FP--TFFKNSLIVSAS 79
Cdd:PRK10998  18 LLLLGFIALIMFPLLMVIAISLREGNFATGS---LIPEQISWEHWKLALGFSVehadgrvtpppFPvlLWLWNSVKVAGI 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  80 TAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILS------PLHLTNSLTGLVIVYTAfNVPFA 153
Cdd:PRK10998  95 TAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDrlgqyiPFIGLNTHGGVIFAYLG-GIALH 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 154 TFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNDAATFPVGLLTFV 233
Cdd:PRK10998 174 VWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYL 253

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 517259702 234 SKFSVDFGQMMAAGVMALIPAGLFFLLIQRYLVQGLTAGAVKG 276
Cdd:PRK10998 254 NPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 9-265 9.74e-36

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 128.31  E-value: 9.74e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   9 IAHRAAILCYIAFALFPLFWLLKVSVTPndllySEGVRMWPSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTAVTVTICA 88
Cdd:COG1177    7 LLLRLFLALVLLFLYLPILVLVLYSFND-----SWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  89 SLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDL 168
Cdd:COG1177   82 TPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 169 EEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLInGNDAATFPVGLLTFVsKFSVDFgQMMAAGV 248
Cdd:COG1177  162 EEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLA-GPGVTTLPVYIYSMI-RRGISP-EINALST 238

                        250
                 ....*....|....*..
gi 517259702 249 MALIPAGLFFLLIQRYL 265
Cdd:COG1177  239 LLILLSLLLLLLAERLR 255
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
19-269 1.06e-24

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 99.81  E-value: 1.06e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  19 IAFALFPLFWLLKVSVTPNDLLYSEGVRMWPSRTTWDHYAFVLRH------SAFPTFFKNSLIVSASTAVTVTICASLSG 92
Cdd:PRK10973  20 IAVILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNgvgnnsAPFGRMLLNSFVMAFSITVGKITVSMLSA 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  93 YALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGLVIVYTAFNVpfATFLMQSFFDGIPRDLEEAA 172
Cdd:PRK10973 100 FAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASAT--ATFLFRQFFMTLPDELVEAA 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 173 KIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNDAATFPVGLLTFVSK--FSVDFGQMMAAGVMA 250
Cdd:PRK10973 178 RIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIATgeGTTEWNQVMAAMLLT 257

                        250
                 ....*....|....*....
gi 517259702 251 LIPAGLFFLLIQRYLVQGL 269
Cdd:PRK10973 258 LIPPVVIVLAMQRAFVRGL 276
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-265 7.68e-22

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 94.46  E-value: 7.68e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   2 RRSVVPTIAHRAAILCYIAFALFPLFWLLKVSVTPNdllysegvrmwpsrttWDHYAFVLRHSAFPTFFKNSLIVSASTA 81
Cdd:COG1178    4 RPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG----------------LANFWALLSDPYLWRALGNTLLLALLVT 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  82 VTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFP-LVM------------LVAPIFKILSPLHLTN--SLTGLVIVYT 146
Cdd:COG1178   68 LLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPpYVValawialfgpngLLNTLLRALFGLEPPDiyGLGGIILVLV 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 147 AFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSEllFALMLINGNDAATFP 226
Cdd:COG1178  148 LFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD--FGTPLVLGGGYTTLT 225

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 517259702 227 VGLLTFVSkFSVDFGQMMAAGVMALIPAGLFFLLIQRYL 265
Cdd:COG1178  226 TAIYQAWL-GDFDLGAAAALALVLLLLVLLLLLLERRLR 263
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-265 3.91e-20

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 89.45  E-value: 3.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  13 AAILCYIAFALFPLFWLLKVSVTPNdllysegvrmWPSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTAVTVTICASLSG 92
Cdd:COG1178  293 LCLLLVLLGLLLPLLALLLWSLTKA----------LDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLA 362

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  93 YALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILS---PLHLTNSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDLE 169
Cdd:COG1178  363 YLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNrplPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLE 442

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 170 EAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNdAATFPVGLLTFVSkfSVDFGQMMAAGVM 249
Cdd:COG1178  443 EAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG-FETLAVLIYQLAS--SGRYGEAAALALL 519

                        250
                 ....*....|....*.
gi 517259702 250 ALIPAGLFFLLIQRYL 265
Cdd:COG1178  520 LVLVSLLPVLLLERLL 535
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 19-265 2.63e-18

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 82.50  E-value: 2.63e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  19 IAFALFPLFWLLKVSVTPNDLLYSEGvrmwpSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTAVTVTICASLSGYALSRF 98
Cdd:COG1176   23 LLFFVLPLLLLLVYSFTTRDPYGGVV-----PGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  99 NFRAKYWIVALMLLTQMFPLVMLVAPIFKILS-----------------PLHLTNSLTGLVIVYTAFNVPFATFLMQSFF 161
Cdd:COG1176   98 PPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGrngllnslllalglidePLRLLYTEFAVVIGLVYVYLPFMVLPLYAAL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 162 DGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLiNGNDAATFPVGLLTFVSKFSvDFG 241
Cdd:COG1176  178 EKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL-GGGKVLMIGNLIYQQFLSAL-NWP 255

                        250       260
                 ....*....|....*....|....
gi 517259702 242 QMMAAGVMALIPAGLFFLLIQRYL 265
Cdd:COG1176  256 LAAALAVVLLLIVLLVLLLYLRLL 279
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 70-252 2.96e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.31  E-value: 2.96e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  70 FKNSLIVSASTAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGL----VIVY 145
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLglpaLILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 146 TAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGndaATF 225
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG---EAP 157

                        170       180
                 ....*....|....*....|....*..
gi 517259702 226 PVGLLTFVSKFSVDFGQMMAAGVMALI 252
Cdd:cd06261  158 GPGTGLLLIFAILFPGDLGVAAAVALI 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 97-269 7.38e-15

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 70.79  E-value: 7.38e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   97 RFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPLHLTNSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDG 176
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  177 ATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLINGNdaatfPVGLLTFVSKFSVDFGQ---MMAAGVMALIP 253
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP-----GLGLLLIEAILGYDYPEiqgPVLAAALILLL 165

                         170
                  ....*....|....*.
gi 517259702  254 AGLFFLLIQRYLVQGL 269
Cdd:pfam00528 166 LNLLVDILQRLLDPRV 181
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 50-209 2.66e-13

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 68.24  E-value: 2.66e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  50 SRTTWDHYAFVLRHSAFPTFFKNSLIVSASTAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFP-------LVMLV 122
Cdd:COG0555   36 AGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPtavagiaLLLLF 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 123 AP---IFKILSPLHLT--NSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAA 197
Cdd:COG0555  116 GPngwLGQLLAPLGIKvaFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLT 195

                        170
                 ....*....|..
gi 517259702 198 TLGFVFTAAWSE 209
Cdd:COG0555  196 GFALAFARALGE 207
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
14-265 3.30e-12

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 65.16  E-value: 3.30e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  14 AILCYIAFALFPLFWLLKVSVTPNDLLYSEgvrmwPSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTAVTVTICASLSGY 93
Cdd:COG1175   27 ALLLLLVFVLYPLLYTLYLSFTDWNLLGPP-----PEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLAL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  94 ALSRfNFRAKYWIVALMLLTQMFPLVMlVAPIFK------------ILSPLHLTN---------SLTGLVIVYTAFNVPF 152
Cdd:COG1175  102 LLNR-KLRGRGFFRTLFFLPWVISPVV-VALIWKwlfnpdygllnaLLGALGLEPinwlgdpslALPAVIIVTVWKGTGF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 153 ATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLgfVFTAAWSELLFALMLI---NGNDAATFPVGL 229
Cdd:COG1175  180 NMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVL--VLSTIGALQVFDLVYVltgGGPGNSTTTLVL 257

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 517259702 230 LTFVSKFS-VDFGQMMAAGVMALIPAGLFFLLIQRYL 265
Cdd:COG1175  258 YIYQTAFQqFDFGYASAIAVVLFLIILVLTLLQLRLL 294
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 73-201 5.20e-12

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 63.53  E-value: 5.20e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  73 SLIVSASTAVTVTICASLSGYALSRFNFRAKYWIVALMLLtqmfPLVM---------LVA-----PIFKILSPL---HLT 135
Cdd:COG4149   12 SLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTL----PLVLpptvlgfylLLLfgrngPLGQLLEELfgiSLV 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259702 136 NSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGI--AATLGF 201
Cdd:COG4149   88 FTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGIlaGAVLAF 155
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 53-204 7.08e-12

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 63.85  E-value: 7.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  53 TWDHYAFVLRHSAFPTFFKNSLIVSASTAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLVMLVAPIFKILSPL 132
Cdd:PRK09500  42 TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLL 121

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259702 133 HLTNSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFT 204
Cdd:PRK09500 122 GIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFT 193
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 73-202 7.41e-11

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 60.33  E-value: 7.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   73 SLIVSASTAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLV-----MLVA-----PIFKILSPLHLT--NSLTG 140
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTvlgfyLLIAfgpngPIGKLLELFGISlvFTFTG 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259702  141 LVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGI--AATLGFV 202
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLlaGAVLSFA 146
cysT CHL00187
sulfate transport protein; Provisional
 16-220 1.18e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 48.47  E-value: 1.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  16 LCYIAFALF-PLFWLLkvsvtpndLLYSEGVRMWPSRTTWDHYAFvlrhSAFPTFFKNSLIvsasTAVTVTICASLSGYA 94
Cdd:CHL00187  18 LSYIIFLLVlPILALL--------IKASQQPWSDFLQKATEPIAL----SAYSLTLSMALI----AALINGFFGLLIAWV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  95 LSRFNFRAKYWIVALMLLTQMFPLV---MLVAPIFKILSPL-HLTNSLtGLVIVYTAFNV---------PFATFLMQSFF 161
Cdd:CHL00187  82 LVRYNFPGKRLLDAAVDLPFALPTSvagLTLATVYGDNGWIgHLLSHL-GIQIVFTKLGVllamifvsfPFVVRTIQPVL 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 517259702 162 DGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSElLFALMLINGN 220
Cdd:CHL00187 161 QEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGE-YGSIVIISSN 218
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 9-274 1.85e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 42.75  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702    9 IAHRAAILCYIA----FALFPLFWLLKVSVTPNDLLYSEGvrmwpsrttwDHYAFVLRHSAFPTFFKNSLIVSASTAVTV 84
Cdd:TIGR03262   1 LIARLLLAGMILalllFLLLPLLALLTKSVYDSDGDFIGL----------ANFAEYFATPGLLQSLGNSLTVSAIVTAIV 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   85 TICASLSGYALSRFN--FRAKYWIVAL--MLLTQMFPLVMLV-----APIFKILSPLHLTNSLTGLVIVYTAFNVPFATF 155
Cdd:TIGR03262  71 VPLAFAFAYALTRSRipGKGAFRLVALlpLLAPSLLPAISLIylfgnQGLLKGLLGGFSIYGFWGIVIGEVFYTFPHALM 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  156 LMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSEllFALMLINGNDaatFPVgLLTFVSK 235
Cdd:TIGR03262 151 ILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITD--FGVPKVIGGD---YNV-LATDIYK 224

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 517259702  236 FSV---DFGQMMAAGVMALIPAGLFFLL---IQRYLVQGLTAGAV 274
Cdd:TIGR03262 225 QVIgqqNFPMGAVVGVLLLLPALLAFGIdraIQRRQRAQLSSRSV 269
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 7-206 1.90e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 42.36  E-value: 1.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702    7 PTIAHRAAILCYIAFALFPLFWLLKVSVtpndllYSEGVRMWPSRT--TWDHYAFVLRHSAFPTFFKNSLIVSASTAVTV 84
Cdd:TIGR03262 275 PNRVRDAACLVYCAIISAALLAVVGMAV------YASLVKFWPYNLslTLKHYNFDLMDGGGWEAYKNSLRLAATTALIG 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702   85 TICASLSGYALSRFnfRAKYWIVALMLLTQMFP-----LVMLVAPIFKILSPLHLTNSLTG----LVIV-----YTAFNV 150
Cdd:TIGR03262 349 TILVFGGAYLIEKT--RGFGLLRGVLRFLAILPmavpgLVLGLGYIFFFNAPTNPLNGLYGtmalLVLCtvvhfYTVSHL 426

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 517259702  151 PFATFLMQsffdgIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAA 206
Cdd:TIGR03262 427 TAVTALKQ-----IDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNS 477
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 128-197 3.05e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 41.60  E-value: 3.05e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 128 ILSPLHLTNSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAA 197
Cdd:PRK09497 140 IDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIA 209
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 150-261 5.35e-04

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 40.71  E-value: 5.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  150 VPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLInGNDAATFPVGL 229
Cdd:TIGR02138 163 LPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVI-GNVFPISPLSL 241

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 517259702  230 L----TFVSKFSVDFGQMMAAGVM--ALIPAGLFFLLI 261
Cdd:TIGR02138 242 FdpgtTITSLIANQFGEASGGSVHtsALFALGLVLFVI 279
modB PRK09421
molybdate ABC transporter permease subunit;
161-201 1.10e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 39.52  E-value: 1.10e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 517259702 161 FDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAA--TLGF 201
Cdd:PRK09421 115 LEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAgtVLAF 157
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
47-233 2.04e-03

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 38.97  E-value: 2.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702  47 MWPSRTTWDHYAFVLRHSAFPTFFKNSLIVSASTAVTVTICASLSGYALSRFNFRAKYWIVALMLLTQMFPLV---MLVA 123
Cdd:PRK10971  37 MQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAvagLTLA 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 124 PIF-------KILSPLHLTNSLT--GLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPG 194
Cdd:PRK10971 117 SLFsvngwygEWLAKFDIKVTYTwlGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPA 196

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 517259702 195 IAATLGFVFTAAWSElLFALMLINGNDA-ATFPVGLLTFV 233
Cdd:PRK10971 197 LLAGVALSFTRSLGE-FGAVIFIAGNIAwKTEVTSLMIFV 235
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 141-263 2.81e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 38.21  E-value: 2.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 141 LVIVYTAFnvPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSELLFALMLingn 220
Cdd:COG0600  130 FVIFLGAF--FPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELL---- 203

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 517259702 221 dAATFPVGLLTFVSKFSVDFGQMMAAGVMALIPAGLFFLLIQR 263
Cdd:COG0600  204 -GASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRL 245
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 131-259 8.30e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 36.91  E-value: 8.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259702 131 PLHLTNSLTGLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLPGIAATLGFVFTAAWSEl 210
Cdd:PRK15050 154 PLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNE- 232

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 517259702 211 lFALMLING-NDAATFPVGLLtfvSKFSVDF---GQMMAAGVMALIPAGLFFL 259
Cdd:PRK15050 233 -FGIVLFTGaKDVVTLPVLIY---SKAIVDFdypTACAIAVVNLALSLGLYAL 281
malF PRK10999
maltose ABC transporter permease MalF;
139-193 8.55e-03

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 37.25  E-value: 8.55e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 517259702 139 TGLVIVYTAFNVPFATFLMQSFFDGIPRDLEEAAKIDGATQFTAFRQIILPLTLP 193
Cdd:PRK10999 376 TMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIK 430
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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