|
Name |
Accession |
Description |
Interval |
E-value |
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
12-260 |
1.78e-116 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 333.93 E-value: 1.78e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 12 PRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMG 91
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVRSFQISAVFPHLSVLDNVRVALQRPNNLS-----TQFWRPISALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRV 166
Cdd:COG0411 81 IARTFQNPRLFPELTVLENVLVAAHARLGRGllaalLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 167 LEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:COG0411 161 LEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERgiTILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
250
....*....|....*.
gi 517259721 245 SQDERVRVAYMGTEEH 260
Cdd:COG0411 241 RADPRVIEAYLGEEAA 256
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
16-250 |
1.56e-104 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 302.82 E-value: 1.56e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRS 95
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALQRPNNLSTQFWRPISALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLAL 175
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 176 DPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERV 250
Cdd:cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERgITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPRV 236
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
14-257 |
3.25e-76 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 231.54 E-value: 3.25e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 14 VVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLV 93
Cdd:COG4674 9 PILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLGIG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 RSFQISAVFPHLSVLDNVRVALQRPNNL-STQFWRPISAldrLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATT 172
Cdd:COG4674 89 RKFQKPTVFEELTVFENLELALKGDRGVfASLFARLTAE---ERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGML 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 173 LALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRV 252
Cdd:COG4674 166 LAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQADPRVIE 245
|
....*
gi 517259721 253 AYMGT 257
Cdd:COG4674 246 VYLGR 250
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
16-256 |
2.02e-59 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 188.66 E-value: 2.02e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRS 95
Cdd:PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALQRPNN-------LSTQFWRpiSALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLE 168
Cdd:PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKtglfsglLKTPAFR--RAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 169 IATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQ 246
Cdd:PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHnvTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243
|
250
....*....|
gi 517259721 247 DERVRVAYMG 256
Cdd:PRK11300 244 NPDVIKAYLG 253
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
16-260 |
1.24e-56 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 181.03 E-value: 1.24e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVrs 95
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRvalqrpnnlstqFWRPISALDR--LNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTL 173
Cdd:COG1131 79 PQEPALYPDLTVRENLR------------FFARLYGLPRkeARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALAL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 174 ALDPKVLLLDEPMAGMgqeDVG---VVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD-- 247
Cdd:COG1131 147 LHDPELLILDEPTSGL---DPEarrELWELLRELAAEgKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARll 223
|
250
....*....|...
gi 517259721 248 ERVRVAYMGTEEH 260
Cdd:COG1131 224 EDVFLELTGEEAR 236
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
16-256 |
5.10e-54 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 174.27 E-value: 5.10e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRS 95
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALQRPNNLSTQfwrpisaldrLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLAL 175
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKE----------REEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 176 DPKVLLLDEPMAGMGQEDVGVVSSIIREVaRER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRVA 253
Cdd:cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKIL-KDRgiGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKV 229
|
...
gi 517259721 254 YMG 256
Cdd:cd03218 230 YLG 232
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
15-256 |
8.67e-54 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 173.68 E-value: 8.67e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLvr 94
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGI-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 SF--QISAVFPHLSVLDNVRVALQRpnnlstqfwRPISALDRlNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATT 172
Cdd:COG1137 81 GYlpQEASIFRKLTVEDNILAVLEL---------RKLSKKER-EERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 173 LALDPKVLLLDEPMAGMgqeD---VGVVSSIIREvARER--AVLMVEHN----LSvvanICQHVTVLQRGEILAEGDYAT 243
Cdd:COG1137 151 LATNPKFILLDEPFAGV---DpiaVADIQKIIRH-LKERgiGVLITDHNvretLG----ICDRAYIISEGKVLAEGTPEE 222
|
250
....*....|...
gi 517259721 244 VSQDERVRVAYMG 256
Cdd:COG1137 223 ILNNPLVRKVYLG 235
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
15-256 |
1.12e-53 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 173.61 E-value: 1.12e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVR 94
Cdd:TIGR04406 1 TLVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 SFQISAVFPHLSVLDNVRVALQRPNNLSTqfwrpisalDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLA 174
Cdd:TIGR04406 81 LPQEASIFRKLTVEENIMAVLEIRKDLDR---------AEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 175 LDPKVLLLDEPMAGMGQEDVGVVSSIIREVaRER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRV 252
Cdd:TIGR04406 152 TNPKFILLDEPFAGVDPIAVGDIKKIIKHL-KERgiGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRR 230
|
....
gi 517259721 253 AYMG 256
Cdd:TIGR04406 231 VYLG 234
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
15-256 |
4.21e-52 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 169.39 E-value: 4.21e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVR 94
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 SFQISAVFPHLSVLDNVRVALQRPNNLSTQFWRPISALD---RLNERAEQLlasvglskerdhiAADLSYGRKRVLEIAT 171
Cdd:COG0410 83 VPEGRRIFPSLTVEENLLLGAYARRDRAEVRADLERVYElfpRLKERRRQR-------------AGTLSGGEQQMLAIGR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 172 TLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER-AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERV 250
Cdd:COG0410 150 ALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGvTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEV 229
|
....*.
gi 517259721 251 RVAYMG 256
Cdd:COG0410 230 REAYLG 235
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
16-247 |
7.36e-51 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 165.69 E-value: 7.36e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRS 95
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALQRPNNLSTQfWRPISALD---RLNERAEQLlasvglskerdhiAADLSYGRKRVLEIATT 172
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRK-ARLERVYElfpRLKERRKQL-------------AGTLSGGEQQMLAIARA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 173 LALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD 247
Cdd:cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEgVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
15-246 |
3.71e-49 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 161.95 E-value: 3.71e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVr 94
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVL- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 sFQISAVFPHLSVLDNVR-VALQRPNNlstqfwrpisaLDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTL 173
Cdd:COG4555 80 -PDERGLYDRLTVRENIRyFAELYGLF-----------DEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 174 ALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQ 246
Cdd:COG4555 148 VHDPKVLLLDEPTNGLDVMARRLLREILRALKKEgKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELRE 221
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
14-251 |
3.62e-45 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 151.67 E-value: 3.62e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 14 VVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV----AR 89
Cdd:COG1127 4 PMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELyelrRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 90 MGLVrsFQISAVFPHLSVLDNVRVALQRPNNLStqfwrpisaLDRLNERAEQLLASVGLSKERDHIAADLSYG-RKRVlE 168
Cdd:COG1127 84 IGML--FQGGALFDSLTVFENVAFPLREHTDLS---------EAEIRELVLEKLELVGLPGAADKMPSELSGGmRKRV-A 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 169 IATTLALDPKVLLLDEPMAGMgqeD---VGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYAT 243
Cdd:COG1127 152 LARALALDPEILLYDEPTAGL---DpitSAVIDELIRELRDELglTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEE 228
|
250
....*....|
gi 517259721 244 V--SQDERVR 251
Cdd:COG1127 229 LlaSDDPWVR 238
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
15-254 |
7.07e-45 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 151.01 E-value: 7.07e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPdkvaRMGLV- 93
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARR----RIGYVp 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 RSFQISAVFPhLSVLDNVRVALQRPNNlstqFWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYG-RKRVLeIATT 172
Cdd:COG1121 82 QRAEVDWDFP-ITVRDVVLMGRYGRRG----LFRRPSRADR--EAVDEALERVGLEDLADRPIGELSGGqQQRVL-LARA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 173 LALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGeILAEGDYATVSQDERVR 251
Cdd:COG1121 154 LAQDPDLLLLDEPFAGVDAATEEALYELLRELRREgKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEEVLTPENLS 232
|
...
gi 517259721 252 VAY 254
Cdd:COG1121 233 RAY 235
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
19-251 |
7.57e-45 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 150.73 E-value: 7.57e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV----ARMGLVr 94
Cdd:cd03261 4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELyrlrRRMGML- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 sFQISAVFPHLSVLDNVRVALQRPNNLStqfwrpisaLDRLNERAEQLLASVGLSKERDHIAADLSYG-RKRVlEIATTL 173
Cdd:cd03261 83 -FQSGALFDSLTVFENVAFPLREHTRLS---------EEEIREIVLEKLEAVGLRGAEDLYPAELSGGmKKRV-ALARAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 174 ALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV--SQDER 249
Cdd:cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELglTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELraSDDPL 231
|
..
gi 517259721 250 VR 251
Cdd:cd03261 232 VR 233
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
12-251 |
7.81e-45 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 157.10 E-value: 7.81e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 12 PRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMG 91
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVRSFQISAVFPHLSVLDNVRValqrpNNLSTQFWRpisaLDR--LNERAEQLLASVGLSKERDHIAADLSYGRKRVLEI 169
Cdd:COG1129 81 IAIIHQELNLVPNLSVAENIFL-----GREPRRGGL----IDWraMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 170 ATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:COG1129 152 ARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQgVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDE 231
|
...
gi 517259721 249 RVR 251
Cdd:COG1129 232 LVR 234
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
15-254 |
8.65e-45 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 150.96 E-value: 8.65e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR-MGLV 93
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARrIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 rsFQISAVFPHLSVLDNV---RVALQRpnnlstqFWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYG-RKRVLeI 169
Cdd:COG1120 81 --PQEPPAPFGLTVRELValgRYPHLG-------LFGRPSAEDR--EAVEEALERTGLEHLADRPVDELSGGeRQRVL-I 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 170 ATTLALDPKVLLLDEPMAGMgqeDVG---VVSSIIREVARE--RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:COG1120 149 ARALAQEPPLLLLDEPTSHL---DLAhqlEVLELLRRLARErgRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV 225
|
250
....*....|
gi 517259721 245 SQDERVRVAY 254
Cdd:COG1120 226 LTPELLEEVY 235
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
16-235 |
1.69e-43 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 145.23 E-value: 1.69e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVrs 95
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRvalqrpnnlstqfwrpisaldrlneraeqllasvglskerdhiaadLSYGRKRVLEIATTLAL 175
Cdd:cd03230 79 PEEPSLYENLTVRENLK----------------------------------------------LSGGMKQRLALAQALLH 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 176 DPKVLLLDEPMAGMGQEDVGVVSSIIRE-VARERAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:cd03230 113 DPELLILDEPTSGLDPESRREFWELLRElKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-240 |
2.11e-43 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 153.91 E-value: 2.11e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 1 MAVSAIETQEKPRVVLSARGLRRDF-----GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLM 75
Cdd:COG1123 246 ARGRAAPAAAAAEPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFD 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 76 GVDITKTPPDKVA----RMGLVrsFQ--ISAVFPHLSVLDNVRVALQRPNNLSTQFWRpisaldrlnERAEQLLASVGLS 149
Cdd:COG1123 326 GKDLTKLSRRSLRelrrRVQMV--FQdpYSSLNPRMTVGDIIAEPLRLHGLLSRAERR---------ERVAELLERVGLP 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 150 KE-RDHIAADLSYG-RKRVLeIATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARER--AVLMVEHNLSVVAN 222
Cdd:COG1123 395 PDlADRYPHELSGGqRQRVA-IARALALEPKLLILDEPTSAL---DVSVQAQIlnlLRDLQRELglTYLFISHDLAVVRY 470
|
250
....*....|....*...
gi 517259721 223 ICQHVTVLQRGEILAEGD 240
Cdd:COG1123 471 IADRVAVMYDGRIVEDGP 488
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
26-249 |
9.67e-43 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 145.17 E-value: 9.67e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARM-GLVrsFQisavFP- 103
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKvGLV--FQ----NPd 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 ----HLSVLDNVRVALQrpnNLstqfwrpisALDR--LNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDP 177
Cdd:COG1122 86 dqlfAPTVEEDVAFGPE---NL---------GLPReeIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEP 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 178 KVLLLDEPMAGM---GQEDvgvVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDER 249
Cdd:COG1122 154 EVLVLDEPTAGLdprGRRE---LLELLKRLNKEgKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYE 226
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
16-252 |
4.99e-42 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 149.93 E-value: 4.99e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRS 95
Cdd:PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVAlqrpNNLSTQFWR-PISALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLA 174
Cdd:PRK09700 86 YQELSVIDELTVLENLYIG----RHLTKKVCGvNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 175 LDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRV 252
Cdd:PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEgTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRL 240
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
16-238 |
1.22e-40 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 139.53 E-value: 1.22e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGG----FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDkvarMG 91
Cdd:cd03293 1 LEVRNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPD----RG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVrsFQISAVFPHLSVLDNVRVALQRpnnlstqfwRPISALDRLnERAEQLLASVGLSKERDHIAADLSYG-RKRVlEIA 170
Cdd:cd03293 77 YV--FQQDALLPWLTVLDNVALGLEL---------QGVPKAEAR-ERAEELLELVGLSGFENAYPHQLSGGmRQRV-ALA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 171 TTLALDPKVLLLDEPMA--------GMGQEdvgvVSSIIREvaRERAVLMVEHNLSVVANICQHVTVL--QRGEILAE 238
Cdd:cd03293 144 RALAVDPDVLLLDEPFSaldaltreQLQEE----LLDIWRE--TGKTVLLVTHDIDEAVFLADRVVVLsaRPGRIVAE 215
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
16-239 |
1.31e-40 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 139.18 E-value: 1.31e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGG--FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLV 93
Cdd:cd03263 1 LQIRNLTKTYKKgtKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 rsFQISAVFPHLSVLDNVRvalqrpnnLSTQFwRPISALDRlNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTL 173
Cdd:cd03263 81 --PQFDALFDELTVREHLR--------FYARL-KGLPKSEI-KEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIAL 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 174 ALDPKVLLLDEPMAGM---GQEDvgvVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03263 149 IGGPSVLLLDEPTSGLdpaSRRA---IWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
18-239 |
3.30e-40 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 138.27 E-value: 3.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 18 ARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVrsFQ 97
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV--FQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 98 ISAVFPHLSVLDNVRVaLQRPNNLSTQFWRpisaldrlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDP 177
Cdd:cd03265 81 DLSVDDELTGWENLYI-HARLYGVPGAERR---------ERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 178 KVLLLDEPMAGMGQEDVGVVSSIIREVARERA--VLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGmtILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
16-239 |
6.36e-40 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 137.27 E-value: 6.36e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvARMGLVrs 95
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER-RNIGMV-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALqRPNNLSTQFWRpisaldrlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLAL 175
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGL-KLRGVPKAEIR---------ARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 176 DPKVLLLDEPMAGMgqeDVGVVSSIIREVAR-----ERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03259 148 EPSLLLLDEPLSAL---DAKLREELREELKElqrelGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
12-217 |
1.02e-39 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 138.30 E-value: 1.02e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 12 PRVVLSARGLRRDF----GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDkv 87
Cdd:COG1116 4 AAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPD-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 88 arMGLVrsFQISAVFPHLSVLDNVRVALQRpnnlstqfwRPISALDRlNERAEQLLASVGLSKERDHIAADLSYG-RKRV 166
Cdd:COG1116 82 --RGVV--FQEPALLPWLTVLDNVALGLEL---------RGVPKAER-RERARELLELVGLAGFEDAYPHQLSGGmRQRV 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 167 lEIATTLALDPKVLLLDEPMAG--------MGQEdvgvVSSIIREvaRERAVLMVEHNL 217
Cdd:COG1116 148 -AIARALANDPEVLLMDEPFGAldaltrerLQDE----LLRLWQE--TGKTVLFVTHDV 199
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
25-239 |
2.49e-39 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 135.74 E-value: 2.49e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 25 FGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPpdkvARMGLV-RSFQISAVFP 103
Cdd:cd03235 9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKER----KRIGYVpQRRSIDRDFP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 hLSVLDNVRVALQRPNNlstqFWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYG-RKRVLeIATTLALDPKVLLL 182
Cdd:cd03235 85 -ISVRDVVLMGLYGHKG----LFRRLSKADK--AKVDEALERVGLSELADRQIGELSGGqQQRVL-LARALVQDPDLLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 183 DEPMAG---MGQEDvgvVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRgEILAEG 239
Cdd:cd03235 157 DEPFAGvdpKTQED---IYELLRELRREgMTILVVTHDLGLVLEYFDRVLLLNR-TVVASG 213
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
30-234 |
2.91e-38 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 132.98 E-value: 2.91e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARM-GLVrsFQisavFP----- 103
Cdd:cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKvGLV--FQ----NPddqff 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 HLSVLDNVRVAlqrPNNLSTqfwrpisALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLD 183
Cdd:cd03225 90 GPTVEEEVAFG---LENLGL-------PEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 517259721 184 EPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGE 234
Cdd:cd03225 160 EPTAGLDPAGRRELLELLKKLKAEgKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
16-187 |
5.25e-38 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 136.00 E-value: 5.25e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvaR-MGLVr 94
Cdd:COG3842 6 LELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK--RnVGMV- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 sFQISAVFPHLSVLDNVRVALQRpnnlstqfwRPISALDRlNERAEQLLASVGLSKERDHIAADLSYG-RKRVlEIATTL 173
Cdd:COG3842 83 -FQDYALFPHLTVAENVAFGLRM---------RGVPKAEI-RARVAELLELVGLEGLADRYPHQLSGGqQQRV-ALARAL 150
|
170
....*....|....
gi 517259721 174 ALDPKVLLLDEPMA 187
Cdd:COG3842 151 APEPRVLLLDEPLS 164
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
16-240 |
5.84e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 132.69 E-value: 5.84e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTT---VFNLLTKFL--QPTSGTITLMGVDITKTPPDKVA-- 88
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTllrLLNRLNDLIpgAPDEGEVLLDGKDIYDLDVDVLElr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 89 -RMGLVrsFQISAVFPhLSVLDNVRVALQRpnnlstqfwRPISALDRLNERAEQLLASVGLSKE--RDHIAADLSYGRKR 165
Cdd:cd03260 81 rRVGMV--FQKPNPFP-GSIYDNVAYGLRL---------HGIKLKEELDERVEEALRKAALWDEvkDRLHALGLSGGQQQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 166 VLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
16-235 |
7.74e-38 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 132.23 E-value: 7.74e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGG----FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR-- 89
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAfr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 90 ---MGLVrsFQISAVFPHLSVLDNVRVALQrpnnLSTQFWRPIsaldrlNERAEQLLASVGLSKERDHIAADLSYG-RKR 165
Cdd:cd03255 81 rrhIGFV--FQSFNLLPDLTALENVELPLL----LAGVPKKER------RERAEELLERVGLGDRLNHYPSELSGGqQQR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 166 VLeIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSvVANICQHVTVLQRGEI 235
Cdd:cd03255 149 VA-IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAgtTIVVVTHDPE-LAEYADRIIELRDGKI 218
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
15-258 |
1.02e-37 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 132.71 E-value: 1.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVR 94
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 SFQISAVFPHLSVLDNVRVALQRPNNLSTQfwrpisaldRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLA 174
Cdd:PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAE---------QREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 175 LDPKVLLLDEPMAGMGQEDVGVVSSIIREVaRER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRV 252
Cdd:PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHL-RDSglGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKR 232
|
....*.
gi 517259721 253 AYMGTE 258
Cdd:PRK10895 233 VYLGED 238
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
15-239 |
2.12e-37 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 131.47 E-value: 2.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDF----GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtppdKVARM 90
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLK----LSRRL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 91 GLVRSFQISAVF--------PHLSVLDNVRVALqrpnnlstQFWRPISALDRLNERAEQLLASVGLSKER-DHIAADLSY 161
Cdd:cd03257 77 RKIRRKEIQMVFqdpmsslnPRMTIGEQIAEPL--------RIHGKLSKKEARKEAVLLLLVGVGLPEEVlNRYPHELSG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 162 G-RKRVLeIATTLALDPKVLLLDEPMAGMgqeDVGVVSSII---REVARER--AVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:cd03257 149 GqRQRVA-IARALALNPKLLIADEPTSAL---DVSVQAQILdllKKLQEELglTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
....
gi 517259721 236 LAEG 239
Cdd:cd03257 225 VEEG 228
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
16-235 |
3.31e-36 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 127.65 E-value: 3.31e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTV---FNLLTKflqPTSGTITLMGVDITKTPPD--KV-AR 89
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLlrcINLLEE---PDSGTIIIDGLKLTDDKKNinELrQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 90 MGLVrsFQISAVFPHLSVLDNVRVALQRPNNLSTqfwrpisalDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEI 169
Cdd:cd03262 78 VGMV--FQQFNLFPHLTVLENITLAPIKVKGMSK---------AEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAI 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 170 ATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEgMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
16-187 |
6.54e-36 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 127.74 E-value: 6.54e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvARMGLVrs 95
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK-RPVNTV-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALQRpnnlstqfwRPISAlDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLAL 175
Cdd:cd03300 78 FQNYALFPHLTVFENIAFGLRL---------KKLPK-AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN 147
|
170
....*....|..
gi 517259721 176 DPKVLLLDEPMA 187
Cdd:cd03300 148 EPKVLLLDEPLG 159
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
31-185 |
1.59e-35 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 123.91 E-value: 1.59e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-ARMGLVrsFQISAVFPHLSVLD 109
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLrKEIGYV--FQDPQLFPRLTVRE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 110 NVRVALQRPNNLSTQFwrpisaldrlNERAEQLLASVGLSKERDHIAAD----LSYGRKRVLEIATTLALDPKVLLLDEP 185
Cdd:pfam00005 79 NLRLGLLLKGLSKREK----------DARAEEALEKLGLGDLADRPVGErpgtLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
15-240 |
9.01e-35 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 126.38 E-value: 9.01e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARM---- 90
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRIGYLpeer 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 91 GLvrsfqisavFPHLSVLDNVrVALQRPNNLStqfwrpisaLDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIA 170
Cdd:COG4152 81 GL---------YPKMKVGEQL-VYLARLKGLS---------KAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLI 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:COG4152 142 AALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAKgTTVIFSSHQMELVEELCDRIVIINKGRKVLSGS 212
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
26-240 |
9.51e-35 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 124.62 E-value: 9.51e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV----ARMGLVrsFQISAV 101
Cdd:cd03258 16 GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELrkarRRIGMI--FQHFNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 102 FPHLSVLDNVRVALQrpnnlstqfwrpISALDR--LNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKV 179
Cdd:cd03258 94 LSSRTVFENVALPLE------------IAGVPKaeIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 180 LLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:cd03258 162 LLCDEATSALDPETTQSILALLRDINRELglTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
15-248 |
1.06e-34 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 130.15 E-value: 1.06e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMG--VDItKTPpdKVAR--- 89
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpVRI-RSP--RDAIalg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 90 MGLVrsFQISAVFPHLSVLDNVRVALQRPnnlstqfWRPISALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEI 169
Cdd:COG3845 82 IGMV--HQHFMLVPNLTVAENIVLGLEPT-------KGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 170 ATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:COG3845 153 LKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEgKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEEE 232
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
17-239 |
3.86e-34 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 121.39 E-value: 3.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 17 SARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsf 96
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELAR------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 97 qisavfpHLSVLdnvrvalqrpnnlstqfwrpisaldrlneraEQLLASVGLSKERDHIAADLSYG-RKRVLeIATTLAL 175
Cdd:cd03214 74 -------KIAYV-------------------------------PQALELLGLAHLADRPFNELSGGeRQRVL-LARALAQ 114
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 176 DPKVLLLDEPMAGMgqeDVG---VVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03214 115 EPPILLLDEPTSHL---DIAhqiELLELLRRLARERgkTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
16-239 |
5.23e-34 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 121.94 E-value: 5.23e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtPPDKVARMGLVRS 95
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK-NIEALRRIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQisAVFPHLSVLDNVRVALQrpnnlstqfwrpisALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLAL 175
Cdd:cd03268 80 AP--GFYPNLTARENLRLLAR--------------LLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 176 DPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03268 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQgITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
15-215 |
7.93e-34 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 121.43 E-value: 7.93e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVr 94
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 sFQISAVFPHLSVLDNVRvalqrpnnlstqFWRPISALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLA 174
Cdd:COG4133 81 -GHADGLKPELTVRENLR------------FWAALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLL 147
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 517259721 175 LDPKVLLLDEPMAGMGQEDVGVVSSIIRE-VARERAVLMVEH 215
Cdd:COG4133 148 SPAPLWLLDEPFTALDAAGVALLAELIAAhLARGGAVLLTTH 189
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
32-240 |
5.98e-33 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 120.17 E-value: 5.98e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 32 KNVDLDVHDASVHALIGPNGAGKTTVFNLLT--KFLQPTSGTITLMGVDITKTPPDKVARMGLVRSFQISAVFPHLSVLD 109
Cdd:COG0396 17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMghPKYEVTSGSILLDGEDILELSPDERARAGIFLAFQYPVEIPGVSVSN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 110 NVRVAL--QRPNNLSTQFWRpisaldrlnERAEQLLASVGLSKE---RDhIAADLSYGRKRVLEIATTLALDPKVLLLDE 184
Cdd:COG0396 97 FLRTALnaRRGEELSAREFL---------KLLKEKMKELGLDEDfldRY-VNEGFSGGEKKRNEILQMLLLEPKLAILDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 185 PMAGMgqeDV---GVVSSIIREVARE-RAVLMVEHNLSVVANI-CQHVTVLQRGEILAEGD 240
Cdd:COG0396 167 TDSGL---DIdalRIVAEGVNKLRSPdRGILIITHYQRILDYIkPDFVHVLVDGRIVKSGG 224
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
16-254 |
1.37e-32 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 119.45 E-value: 1.37e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRS 95
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPhLSVLDNVRVALQRpnnlstqfWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYGRK------RVL-E 168
Cdd:COG4559 82 QHSSLAFP-FTVEEVVALGRAP--------HGSSAAQDR--QIVREALALVGLAHLAGRSYQTLSGGEQqrvqlaRVLaQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 169 IATTLALDPKVLLLDEPMAGMgqeDVG---VVSSIIREVARER-AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:COG4559 151 LWEPVDGGPRWLFLDEPTSAL---DLAhqhAVLRLARQLARRGgGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEV 227
|
250
....*....|
gi 517259721 245 SQDERVRVAY 254
Cdd:COG4559 228 LTDELLERVY 237
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
16-239 |
3.75e-32 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 117.29 E-value: 3.75e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVhDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRs 95
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 fQISAVFPHLSVLDnvrvalqrpnnlstqFWRPISALDRLN-----ERAEQLLASVGLSKERDHIAADLSYGRKRVLEIA 170
Cdd:cd03264 79 -QEFGVYPNFTVRE---------------FLDYIAWLKGIPskevkARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
19-234 |
4.23e-32 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 116.13 E-value: 4.23e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKT---PPDKVARMGLVrs 95
Cdd:cd03229 4 KNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLedeLPPLRRRIGMV-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVAlqrpnnlstqfwrpisaldrlneraeqllasvglskerdhiaadLSYGRKRVLEIATTLAL 175
Cdd:cd03229 82 FQDFALFPHLTVLENIALG--------------------------------------------LSGGQQQRVALARALAM 117
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 176 DPKVLLLDEPMAGMGQEDVGVVSSIIREVARE--RAVLMVEHNLSVVANICQHVTVLQRGE 234
Cdd:cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQlgITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
19-235 |
4.46e-32 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 117.83 E-value: 4.46e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvARMGLVrsFQI 98
Cdd:cd03296 6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE-RNVGFV--FQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 99 SAVFPHLSVLDNVRVALQ-RPNNlstqfWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDP 177
Cdd:cd03296 83 YALFRHMTVFDNVAFGLRvKPRS-----ERPPEAEIR--AKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 178 KVLLLDEPMAGMGQEDVGVVSSIIREVARERAV--LMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVttVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
26-252 |
7.25e-32 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 117.28 E-value: 7.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV----ARMGLVrsFQISAV 101
Cdd:cd03256 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALrqlrRQIGMI--FQQFNL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 102 FPHLSVLDNVRV-ALQRPNNLSTqFWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVL 180
Cdd:cd03256 90 IERLSVLENVLSgRLGRRSTWRS-LFGLFPKEEK--QRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLI 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 181 LLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRV 252
Cdd:cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEgiTVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
16-257 |
8.89e-32 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 116.78 E-value: 8.89e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTavKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDK--VARMglv 93
Cdd:COG3840 2 LRLDDLTYRYGDFP--LRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAErpVSML--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 rsFQISAVFPHLSVLDNVRVALqRPN-NLstqfwrpiSALDRlnERAEQLLASVGLSKERDHIAADLSYG-RKRVlEIAT 171
Cdd:COG3840 77 --FQENNLFPHLTVAQNIGLGL-RPGlKL--------TAEQR--AQVEQALERVGLAGLLDRLPGQLSGGqRQRV-ALAR 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 172 TLALDPKVLLLDEPMAGMG----QEDVgvvsSIIREVARERA--VLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVS 245
Cdd:COG3840 143 CLVRKRPILLLDEPFSALDpalrQEML----DLVDELCRERGltVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALL 218
|
250
....*....|....*
gi 517259721 246 Q---DERVRvAYMGT 257
Cdd:COG3840 219 DgepPPALA-AYLGI 232
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
16-239 |
1.08e-31 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 116.31 E-value: 1.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDF----GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMG 91
Cdd:cd03266 2 ITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVrsFQISAVFPHLSVLDNVRV-----ALQRPNnlstqfwrpisALDRLNERAEQLlasvGLSKERDHIAADLSYGRKRV 166
Cdd:cd03266 82 FV--SDSTGLYDRLTARENLEYfaglyGLKGDE-----------LTARLEELADRL----GMEELLDRRVGGFSTGMRQK 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 167 LEIATTLALDPKVLLLDEPMAGMgqeDVgVVSSIIREVARE-----RAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03266 145 VAIARALVHDPPVLLLDEPTTGL---DV-MATRALREFIRQlralgKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
16-238 |
1.29e-31 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 114.45 E-value: 1.29e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGlvrs 95
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 fqISAVFphlsvldnvrvalQrpnnlstqfwrpisaldrlneraeqllasvglskerdhiaadLSYGRKRVLEIATTLAL 175
Cdd:cd03216 77 --IAMVY-------------Q------------------------------------------LSVGERQMVEIARALAR 99
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 176 DPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAE 238
Cdd:cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQgVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
15-244 |
1.51e-31 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 121.55 E-value: 1.51e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDF--GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPT---SGTITLMGVDITKTPPDkvar 89
Cdd:COG1123 4 LLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEA---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 90 mglVRSFQISAVFPH-LSVLDNVRVALQRPNNLSTQFWRPisalDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLE 168
Cdd:COG1123 80 ---LRGRRIGMVFQDpMTQLNPVTVGDQIAEALENLGLSR----AEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 169 IATTLALDPKVLLLDEPMAGMgqeDVGV---VSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYAT 243
Cdd:COG1123 153 IAMALALDPDLLIADEPTTAL---DVTTqaeILDLLRELQRERgtTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEE 229
|
.
gi 517259721 244 V 244
Cdd:COG1123 230 I 230
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
19-251 |
1.60e-31 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 116.77 E-value: 1.60e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvARMGLVRS--- 95
Cdd:PRK11264 7 KNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS-QQKGLIRQlrq 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 -----FQISAVFPHLSVLDNVrvaLQRPNNLSTQfwrpisALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIA 170
Cdd:PRK11264 86 hvgfvFQNFNLFPHRTVLENI---IEGPVIVKGE------PKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV---SQ 246
Cdd:PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEkRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALfadPQ 236
|
....*
gi 517259721 247 DERVR 251
Cdd:PRK11264 237 QPRTR 241
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
15-254 |
4.75e-31 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 115.18 E-value: 4.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSG-TITLMGVDITKTPPDKV-ARMGL 92
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEDVWELrKRIGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 93 VRSFQISAVFPHLSVLDNVRVALqrpnNLSTQFWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYG-RKRVLeIAT 171
Cdd:COG1119 83 VSPALQLRFPRDETVLDVVLSGF----FDSIGLYREPTDEQR--ERARELLELLGLAHLADRPFGTLSQGeQRRVL-IAR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 172 TLALDPKVLLLDEPMAGM---GQEDvgvVSSIIREVARE--RAVLMVEHNLS-VVANIcQHVTVLQRGEILAEGDYATVS 245
Cdd:COG1119 156 ALVKDPELLILDEPTAGLdlgAREL---LLALLDKLAAEgaPTLVLVTHHVEeIPPGI-THVLLLKDGRVVAAGPKEEVL 231
|
....*....
gi 517259721 246 QDERVRVAY 254
Cdd:COG1119 232 TSENLSEAF 240
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
26-240 |
2.27e-30 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 115.56 E-value: 2.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTT---VFNLLTKflqPTSGTITLMGVDITKTPPDKVARmglVRSfQISAVF 102
Cdd:COG1135 16 GPVTALDDVSLTIEKGEIFGIIGYSGAGKSTlirCINLLER---PTSGSVLVDGVDLTALSERELRA---ARR-KIGMIF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 PH---LS---VLDNVRVALQrpnnlstqfwrpISALDR--LNERAEQLLASVGLSKERDHIAADLSYGRK-RVlEIATTL 173
Cdd:COG1135 89 QHfnlLSsrtVAENVALPLE------------IAGVPKaeIRKRVAELLELVGLSDKADAYPSQLSGGQKqRV-GIARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 174 ALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:COG1135 156 ANNPKVLLCDEATSALDPETTRSILDLLKDINRELglTIVLITHEMDVVRRICDRVAVLENGRIVEQGP 224
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
26-235 |
2.59e-30 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 112.84 E-value: 2.59e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVA----RMGLVrsFQISAV 101
Cdd:COG2884 13 GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPylrrRIGVV--FQDFRL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 102 FPHLSVLDNVRVALQrpnnlstqfwrpISALDR--LNERAEQLLASVGLSKERDHIAADLSYG-RKRVlEIATTLALDPK 178
Cdd:COG2884 91 LPDRTVYENVALPLR------------VTGKSRkeIRRRVREVLDLVGLSDKAKALPHELSGGeQQRV-AIARALVNRPE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 179 VLLLDEPMAGMGQEDVGVVSSIIREVARER-AVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEINRRGtTVLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
16-240 |
3.47e-30 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 112.81 E-value: 3.47e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTaVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvARMGLVrs 95
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK-RDISYV-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALQRpnnlstqfwrpisaldRLNERAE------QLLASVGLSKERDHIAADLSYGRKRVLEI 169
Cdd:cd03299 77 PQNYALFPHMTVYKNIAYGLKK----------------RKVDKKEierkvlEIAEMLGIDHLLNRKPETLSGGEQQRVAI 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 170 ATTLALDPKVLLLDEPMAGMgqeDVGVVSSIIREVARER-----AVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:cd03299 141 ARALVVNPKILLLDEPFSAL---DVRTKEKLREELKKIRkefgvTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
13-239 |
3.15e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 110.77 E-value: 3.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 13 RVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQ-----PTSGTITLMGVDITKTPPDKV 87
Cdd:PRK14247 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVYLDGQDIFKMDVIEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 88 -ARMGLVrsFQISAVFPHLSVLDNVRVALQrpnnlstqFWRPISALDRLNERAEQLLASVGLSKE----RDHIAADLSYG 162
Cdd:PRK14247 81 rRRVQMV--FQIPNPIPNLSIFENVALGLK--------LNRLVKSKKELQERVRWALEKAQLWDEvkdrLDAPAGKLSGG 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 163 RKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
35-239 |
3.23e-29 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 109.50 E-value: 3.23e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 35 DLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPdkvARMGLVRSFQISAVFPHLSVLDNvrVA 114
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP---ADRPVSMLFQENNLFAHLTVEQN--VG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 115 LQRPNNLStqfwrpISALDRlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMG---- 190
Cdd:cd03298 93 LGLSPGLK------LTAEDR--QAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDpalr 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517259721 191 QEDVGVVSSIIREvaRERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03298 165 AEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
16-239 |
5.75e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 108.91 E-value: 5.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARM----G 91
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLpeerG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LvrsfqisavFPHLSVLDNVrVALQRPNNLSTQFWRPisaldrlneRAEQLLASVGLSKERDHIAADLSYGRKRVLEIAT 171
Cdd:cd03269 81 L---------YPKMKVIDQL-VYLAQLKGLKKEEARR---------RIDEWLERLELSEYANKRVEELSKGNQQKVQFIA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 172 TLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03269 142 AVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAgKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
17-234 |
1.28e-28 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 106.18 E-value: 1.28e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 17 SARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsf 96
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 97 QISAVFphlsvldnvrvalqrpnnlstqfwrpisaldrlneraeqllasvglskerdhiaaDLSYGRKRVLEIATTLALD 176
Cdd:cd00267 74 RIGYVP-------------------------------------------------------QLSGGQRQRVALARALLLN 98
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 177 PKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGE 234
Cdd:cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEgRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
12-248 |
3.63e-28 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 112.07 E-value: 3.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 12 PRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMG 91
Cdd:PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVRSFQISAVFPHLSVLDNVRVALQRPNnlstqfwrpisaldRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIAT 171
Cdd:PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQ--------------ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 172 TLALDPKVLLLDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:PRK15439 154 GLMRDSRILILDEPTASLTPAETERLFSRIRELlAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
9-239 |
4.15e-28 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 107.42 E-value: 4.15e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 9 QEKPRVVLSARGL-RRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV 87
Cdd:cd03267 14 SKEPGLIGSLKSLfKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 88 ARMGLVRSfQISAVFPHLSVLDNVRVaLQRPNNLSTqfwrpisalDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVL 167
Cdd:cd03267 94 RRIGVVFG-QKTQLWWDLPVIDSFYL-LAAIYDLPP---------ARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 168 EIATTLALDPKVLLLDEPMAGM---GQEDvgvVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03267 163 EIAAALLHEPEILFLDEPTIGLdvvAQEN---IRNFLKEYNRERgtTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
14-254 |
6.11e-28 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 107.55 E-value: 6.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 14 VVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLV 93
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 RSFQISAVFPhLSVLDNVRVALQrPNNLSTQfwrpisALDRLnerAEQLLASVGLS--KERDHIAadLSYGRK------R 165
Cdd:PRK13548 81 LPQHSSLSFP-FTVEEVVAMGRA-PHGLSRA------EDDAL---VAAALAQVDLAhlAGRDYPQ--LSGGEQqrvqlaR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 166 VLEIATTLALDPKVLLLDEPMAGMG---QEDvgvVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDlahQHH---VLRLARQLAHERglAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
250
....*....|....
gi 517259721 241 YATVSQDERVRVAY 254
Cdd:PRK13548 225 PAEVLTPETLRRVY 238
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
8-186 |
7.76e-28 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 109.65 E-value: 7.76e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 8 TQEKPrvVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKv 87
Cdd:PRK09452 9 SSLSP--LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 88 armglvRS----FQISAVFPHLSVLDNVRVAL---QRPNnlstqfwrpisalDRLNERAEQLLASVGLSKERDHIAADLS 160
Cdd:PRK09452 86 ------RHvntvFQSYALFPHMTVFENVAFGLrmqKTPA-------------AEITPRVMEALRMVQLEEFAQRKPHQLS 146
|
170 180
....*....|....*....|....*.
gi 517259721 161 YGRKRVLEIATTLALDPKVLLLDEPM 186
Cdd:PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESL 172
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
26-235 |
1.81e-27 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 105.85 E-value: 1.81e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR-MGLVrsFQISAVFPH 104
Cdd:cd03295 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRkIGYV--IQQIGLFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 LSVLDNVRVALQrpnnlsTQFWRPisalDRLNERAEQLLASVGLSKE--RDHIAADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:cd03295 90 MTVEENIALVPK------LLKWPK----EKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLLM 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 183 DEPMagmgqedvGVVSSIIREVARE----------RAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:cd03295 160 DEPF--------GALDPITRDQLQEefkrlqqelgKTIVFVTHDIDEAFRLADRIAIMKNGEI 214
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
26-235 |
3.83e-27 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 103.88 E-value: 3.83e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTppDKVARMGLVRS---FQISAVf 102
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAK--ERRKSIGYVMQdvdYQLFTD- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 phlSVLDNVRVALQrpnnlstqfwrpisALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:cd03226 88 ---SVREELLLGLK--------------ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIF 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517259721 183 DEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:cd03226 151 DEPTSGLDYKNMERVGELIRELAAQgKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
7-240 |
6.94e-27 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 104.73 E-value: 6.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 7 ETQEKPRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTT---VFNLLTKfLQP---TSGTITLMGVDI- 79
Cdd:COG1117 3 APASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTllrCLNRMND-LIPgarVEGEILLDGEDIy 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 80 -TKTPPDKV-ARMGLVrsFQISAVFPHlSVLDNVRVALQrpnnlsTQFWRPISALDrlnERAEQLLASVGLSKE-RDHI- 155
Cdd:COG1117 82 dPDVDVVELrRRVGMV--FQKPNPFPK-SIYDNVAYGLR------LHGIKSKSELD---EIVEESLRKAALWDEvKDRLk 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 156 --AADLSYGRKRVLEIATTLALDPKVLLLDEP------MAGMGQEDVgvvssiIREVARERAVLMVEHNLSVVANICQHV 227
Cdd:COG1117 150 ksALGLSGGQQQRLCIARALAVEPEVLLMDEPtsaldpISTAKIEEL------ILELKKDYTIVIVTHNMQQAARVSDYT 223
|
250
....*....|...
gi 517259721 228 TVLQRGEILAEGD 240
Cdd:COG1117 224 AFFYLGELVEFGP 236
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
30-246 |
1.04e-26 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 108.38 E-value: 1.04e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsfQISAVF--PHL-- 105
Cdd:COG2274 490 VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRR-------QIGVVLqdVFLfs 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 106 -SVLDNVRvalqrpnnlstqFWRPISALDRLNERAEQllasVGLSkerDHIAA--------------DLSYGRKRVLEIA 170
Cdd:COG2274 563 gTIRENIT------------LGDPDATDEEIIEAARL----AGLH---DFIEAlpmgydtvvgeggsNLSGGQRQRLAIA 623
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYATVSQ 246
Cdd:COG2274 624 RALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDGTHEELLA 698
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
12-238 |
1.28e-26 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 103.28 E-value: 1.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 12 PRVVLSARGLRRDFGG----FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV 87
Cdd:COG4181 5 SAPIIELRGLTKTVGTgageLTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDAR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 88 AR-----MGLV-RSFQIsavFPHLSVLDNVRVALqrpnnlstqfwrPISALDRLNERAEQLLASVGLSKERDHIAADLSY 161
Cdd:COG4181 85 ARlrarhVGFVfQSFQL---LPTLTALENVMLPL------------ELAGRRDARARARALLERVGLGHRLDHYPAQLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 162 G-RKRVlEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAV--LMVEHNLSvVANICQHVTVLQRGEILAE 238
Cdd:COG4181 150 GeQQRV-ALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTtlVLVTHDPA-LAARCDRVLRLRAGRLVED 227
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
26-248 |
1.74e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 107.54 E-value: 1.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsfQISAV---- 101
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRR-------QIAWVpqnp 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 102 -FPHLSVLDNVRVAlqRPNNLSTQFWRpisALDR------LNERAEQLLASVGlskERdhiAADLSYGRKRVLEIATTLA 174
Cdd:COG4988 421 yLFAGTIRENLRLG--RPDASDEELEA---ALEAagldefVAALPDGLDTPLG---EG---GRGLSGGQAQRLALARALL 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 175 LDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:COG4988 490 RDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELLAKN 562
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
16-240 |
8.61e-26 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 100.29 E-value: 8.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKF--LQPTSGTITLMGVDITKTPPDKVARMGLV 93
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 RSFQISAVFPHLSVLDNVRvalqrpnnlstqfwrpisaldRLNEraeqllasvGLSkerdhiaadlsyG--RKRVlEIAT 171
Cdd:cd03217 81 LAFQYPPEIPGVKNADFLR---------------------YVNE---------GFS------------GgeKKRN-EILQ 117
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 172 TLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANI-CQHVTVLQRGEILAEGD 240
Cdd:cd03217 118 LLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEgKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGD 188
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
7-252 |
4.39e-25 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 102.22 E-value: 4.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 7 ETQEKPRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDK 86
Cdd:PRK11607 11 KTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 87 --VARMglvrsFQISAVFPHLSVLDNVRVALQRpNNLSTqfwrpisalDRLNERAEQLLASVGL---SKERDHiaaDLSY 161
Cdd:PRK11607 91 rpINMM-----FQSYALFPHMTVEQNIAFGLKQ-DKLPK---------AEIASRVNEMLGLVHMqefAKRKPH---QLSG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 162 GRKRVLEIATTLALDPKVLLLDEPMAGMGQEdvgvvssiirevARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDY 241
Cdd:PRK11607 153 GQRQRVALARSLAKRPKLLLLDEPMGALDKK------------LRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220
|
250
....*....|.
gi 517259721 242 ATVSQDERVRV 252
Cdd:PRK11607 221 AIMNRGKFVQI 231
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
30-247 |
7.23e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 99.82 E-value: 7.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR-----MGLVRSFQISAVFPH 104
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKqirkkVGLVFQFPESQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 lSVLDNVRVAlqrPNNLSTQfwrpisaldrlNERAEQL----LASVGLSKE-RDHIAADLSYGRKRVLEIATTLALDPKV 179
Cdd:PRK13649 102 -TVLKDVAFG---PQNFGVS-----------QEEAEALarekLALVGISESlFEKNPFELSGGQMRRVAIAGILAMEPKI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 180 LLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD 247
Cdd:PRK13649 167 LVLDEPTAGLDPKGRKELMTLFKKLHQSgMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
26-235 |
1.32e-24 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 97.48 E-value: 1.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVA----RMGLVrsFQISAV 101
Cdd:cd03292 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPylrrKIGVV--FQDFRL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 102 FPHLSVLDNVRVALqRPNNLSTQFWRpisaldrlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLL 181
Cdd:cd03292 90 LPDRNVYENVAFAL-EVTGVPPREIR---------KRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 182 LDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:cd03292 160 ADEPTGNLDPDTTWEIMNLLKKInKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
16-240 |
2.73e-24 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 97.73 E-value: 2.73e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDIT----KTPPDKVA--- 88
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdKDGQLKVAdkn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 89 -----RMGLVRSFQISAVFPHLSVLDNVRVALQRPNNLSTQFWRpisaldrlnERAEQLLASVGLS-KERDHIAADLSYG 162
Cdd:PRK10619 86 qlrllRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR---------ERAVKYLAKVGIDeRAQGKYPVHLSGG 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 163 RKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
20-239 |
4.14e-24 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 96.21 E-value: 4.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 20 GLRRDFGGFTAvkNVDLDVhDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGV---DITK---TPPDKvARMGLV 93
Cdd:cd03297 5 DIEKRLPDFTL--KIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfDSRKkinLPPQQ-RKIGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 rsFQISAVFPHLSVLDNVRVALQRPNNLSTQFwrpisaldrlneRAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTL 173
Cdd:cd03297 81 --FQQYALFPHLNVRENLAFGLKRKRNREDRI------------SVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 174 ALDPKVLLLDEPMAGMgqeDVGVVSSIIREVARERA-----VLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03297 147 AAQPELLLLDEPFSAL---DRALRLQLLPELKQIKKnlnipVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
12-239 |
4.43e-24 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 98.34 E-value: 4.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 12 PRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMG 91
Cdd:PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVRSFqiSAVFPHLSVLDNVRVaLQRPNNLSTQFWRpisaldrlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIAT 171
Cdd:PRK13537 84 VVPQF--DNLDPDFTVRENLLV-FGRYFGLSAAAAR---------ALVPPLLEFAKLENKADAKVGELSGGMKRRLTLAR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 172 TLALDPKVLLLDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLlARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
30-244 |
5.27e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 97.43 E-value: 5.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITktppDKVARMGLVRSfQISAVF--PHLSV 107
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT----DKKVKLSDIRK-KVGLVFqyPEYQL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 108 LDNV---RVALQrPNNLSTqfwrpisALDRLNERAEQLLASVGLSKE--RDHIAADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:PRK13637 97 FEETiekDIAFG-PINLGL-------SEEEIENRVKRAMNIVGLDYEdyKDKSPFELSGGQKRRVAIAGVVAMEPKILIL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 183 DEPMAGM---GQEDvgvVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:PRK13637 169 DEPTAGLdpkGRDE---ILNKIKELHKEYnmTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
27-253 |
5.49e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 97.11 E-value: 5.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 27 GFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-ARMGLVRSFQISAVFPhL 105
Cdd:PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVrSKVGLVFQDPDDQVFS-S 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 106 SVLDNVRVAlqrPNNLSTqfwrpisALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEP 185
Cdd:PRK13647 96 TVWDDVAFG---PVNMGL-------DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 186 MAGM---GQEdvgVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRVA 253
Cdd:PRK13647 166 MAYLdprGQE---TLMEILDRLHNQgKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQA 234
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
19-186 |
9.93e-24 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 95.01 E-value: 9.93e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPdKVARMGLVrsFQI 98
Cdd:cd03301 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP-KDRDIAMV--FQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 99 SAVFPHLSVLDNVRVALQRPNnlstqfwRPISALDRLNERAEQLLasvGLSKERDHIAADLSYGRKRVLEIATTLALDPK 178
Cdd:cd03301 81 YALYPHMTVYDNIAFGLKLRK-------VPKDEIDERVREVAELL---QIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150
|
....*...
gi 517259721 179 VLLLDEPM 186
Cdd:cd03301 151 VFLMDEPL 158
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
28-251 |
1.06e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 96.77 E-value: 1.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 28 FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR-----MGLVRSFQISAVF 102
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRpvrkrIGMVFQFPESQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 PhlsvlDNV-RVALQRPNNLSTQfwrpisaLDRLNERAEQLLASVGLSkeRDHIAAD---LSYGRKRVLEIATTLALDPK 178
Cdd:PRK13646 100 E-----DTVeREIIFGPKNFKMN-------LDEVKNYAHRLLMDLGFS--RDVMSQSpfqMSGGQMRKIAIVSILAMNPD 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 179 VLLLDEPMAGMGQEDVGVVSSIIREVARE--RAVLMVEHNLSVVANICQHVTVLQRGEILAEGD-YATVSQDERVR 251
Cdd:PRK13646 166 IIVLDEPTAGLDPQSKRQVMRLLKSLQTDenKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSpKELFKDKKKLA 241
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
35-243 |
1.16e-23 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 95.42 E-value: 1.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 35 DLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDK--VARMglvrsFQISAVFPHLSVLDNVR 112
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRrpVSML-----FQENNLFSHLTVAQNIG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 113 VALQRPNNLSTQfwrpisALDRLNERAEQllasVGLSKERDHIAADLSYG-RKRVlEIATTLALDPKVLLLDEPMAGMG- 190
Cdd:PRK10771 94 LGLNPGLKLNAA------QREKLHAIARQ----MGIEDLLARLPGQLSGGqRQRV-ALARCLVREQPILLLDEPFSALDp 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 191 ---QEDVGVVSSIIREvaRERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYAT 243
Cdd:PRK10771 163 alrQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
25-246 |
1.40e-23 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 95.47 E-value: 1.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 25 FGGFTAVKNVDLDVHDASVHALIGPNGAGKTT---VFNLLTkflQPTSGTITLMG--VDITKTPPDKVAR-----MGLVr 94
Cdd:PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSllrVLNLLE---MPRSGTLNIAGnhFDFSKTPSDKAIRelrrnVGMV- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 sFQISAVFPHLSVLDNVRVALQRPNNLSTQfwrpisaldRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLA 174
Cdd:PRK11124 88 -FQQYNLWPHLTVQQNLIEAPCRVLGLSKD---------QALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 175 LDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAV-LMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQ 246
Cdd:PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITqVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
17-185 |
1.55e-23 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 95.79 E-value: 1.55e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 17 SARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-----ARMG 91
Cdd:cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELrelrrKKIS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVrsFQISAVFPHLSVLDNVRVALQrpnnlstqfWRPISALDRLnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIAT 171
Cdd:cd03294 106 MV--FQSFALLPHRTVLENVAFGLE---------VQGVPRAERE-ERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173
|
170
....*....|....
gi 517259721 172 TLALDPKVLLLDEP 185
Cdd:cd03294 174 ALAVDPDILLMDEA 187
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
26-239 |
1.86e-23 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 97.18 E-value: 1.86e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTT---VFNLLTKflqPTSGTITLMGVDITKTPPDKV--ARMglvrsfQISA 100
Cdd:PRK11153 16 RTIHALNNVSLHIPAGEIFGVIGASGAGKSTlirCINLLER---PTSGRVLVDGQDLTALSEKELrkARR------QIGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 101 VFPH---LS---VLDNVRVALQrpnnlstqfwrpISALDR--LNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATT 172
Cdd:PRK11153 87 IFQHfnlLSsrtVFDNVALPLE------------LAGTPKaeIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 173 LALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELglTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-239 |
2.49e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 94.91 E-value: 2.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQ-----PTSGTITLMGVDITKTPPDKVA-- 88
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElneeaRVEGEVRLFGRNIYSPDVDPIEvr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 89 -RMGLVrsFQISAVFPHLSVLDNVRVALQRpNNLstqfwrpISALDRLNERAEQLLASVGLSKE-RDHI---AADLSYGR 163
Cdd:PRK14267 85 rEVGMV--FQYPNPFPHLTIYDNVAIGVKL-NGL-------VKSKKELDERVEWALKKAALWDEvKDRLndyPSNLSGGQ 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 164 KRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
15-247 |
2.70e-23 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 98.15 E-value: 2.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVR 94
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 SFQISAVFPHLSVLDNVRvalqrpnnLSTQFWRPISALD--RLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATT 172
Cdd:PRK10762 84 IHQELNLIPQLTIAENIF--------LGREFVNRFGRIDwkKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 173 LALDPKVLLLDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD 247
Cdd:PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELkSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED 231
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
27-250 |
2.79e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 95.68 E-value: 2.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 27 GFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGvditktPPDKVARMGLvrsfqisavfphLS 106
Cdd:PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG------KPIDYSRKGL------------MK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVALQRPNN--LSTQFWRPIS--------ALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALD 176
Cdd:PRK13636 80 LRESVGMVFQDPDNqlFSASVYQDVSfgavnlklPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 177 PKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERV 250
Cdd:PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELglTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEM 235
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
30-234 |
3.67e-23 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 92.45 E-value: 3.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsfQISAVF--PHL-- 105
Cdd:cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK-------NIAYVPqdPFLfs 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 106 -SVLDNVrvalqrpnnlstqfwrpisaldrlneraeqllasvglskerdhiaadLSYGRKRVLEIATTLALDPKVLLLDE 184
Cdd:cd03228 90 gTIRENI-----------------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517259721 185 PMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGE 234
Cdd:cd03228 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
31-239 |
4.03e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 94.73 E-value: 4.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQ------PTSGTITLMGVDITKTPPDKVAR-MGLVrsFQISAVFP 103
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQIDAIKLRKeVGMV--FQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 HLSVLDNVRVALQRpnnlstqfwRPISALDRLNERAEQLLASVGLSKE-RDHI---AADLSYGRKRVLEIATTLALDPKV 179
Cdd:PRK14246 104 HLSIYDNIAYPLKS---------HGIKEKREIKKIVEECLRKVGLWKEvYDRLnspASQLSGGQQQRLTIARALALKPKV 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 180 LLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWG 234
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
30-239 |
4.24e-23 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 93.83 E-value: 4.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDItKTPPDKVAR--MGLVrsFQISAVFPHlSV 107
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI-RDISRKSLRsmIGVV--LQDTFLFSG-TI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 108 LDNVRVAlqrpnnlstqfwRPISALDRLNERAEQLLASV-------GLSKERDHIAADLSYGRKRVLEIATTLALDPKVL 180
Cdd:cd03254 94 MENIRLG------------RPNATDEEVIEAAKEAGAHDfimklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 181 LLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQhVTVLQRGEILAEG 239
Cdd:cd03254 162 ILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADK-ILVLDDGKIIEEG 219
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
16-244 |
8.25e-23 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 96.80 E-value: 8.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTI-TLMG---VDITKTPPDKVAR-- 89
Cdd:TIGR03269 285 VSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGdewVDMTKPGPDGRGRak 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 90 --MGLVrsFQISAVFPHLSVLDNVR--VALQRPNNLSTQfwrpisaldrlneRAEQLLASVGLSKER-----DHIAADLS 160
Cdd:TIGR03269 365 ryIGIL--HQEYDLYPHRTVLDNLTeaIGLELPDELARM-------------KAVITLKMVGFDEEKaeeilDKYPDELS 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 161 YGRKRVLEIATTLALDPKVLLLDEPMAGMGQ-EDVGVVSSIIRevARE---RAVLMVEHNLSVVANICQHVTVLQRGEIL 236
Cdd:TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPiTKVDVTHSILK--AREemeQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
....*...
gi 517259721 237 AEGDYATV 244
Cdd:TIGR03269 508 KIGDPEEI 515
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
16-185 |
2.50e-22 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 92.46 E-value: 2.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITktppDKVARMGLVrs 95
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE----GPGAERGVV-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALQrpnnlstqfWRPISALDRLnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLAL 175
Cdd:PRK11248 76 FQNEGLLPWRNVQDNVAFGLQ---------LAGVEKMQRL-EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA 145
|
170
....*....|
gi 517259721 176 DPKVLLLDEP 185
Cdd:PRK11248 146 NPQLLLLDEP 155
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
30-255 |
3.39e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 92.56 E-value: 3.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR-MGLVRSFQISAVFPHLSVL 108
Cdd:PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKfVGLVFQNPDDQIFSPTVEQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 109 DnvrVALQrPNNLstqfwrpisALDR--LNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPM 186
Cdd:PRK13652 99 D---IAFG-PINL---------GLDEetVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 187 AGMGQEDVGVVSSIIREVARERA--VLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV-SQDERVRVAYM 255
Cdd:PRK13652 166 AGLDPQGVKELIDFLNDLPETYGmtVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIfLQPDLLARVHL 237
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
8-239 |
8.91e-22 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 92.48 E-value: 8.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 8 TQEKPRVVLsaRGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTppdKV 87
Cdd:PRK11432 1 MTQKNFVVL--KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR---SI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 88 ARMGLVRSFQISAVFPHLSVLDNVRVALQRPNnlstqfwrpISALDRlNERAEQLLASVGLSKERDHIAADLSYGRKRVL 167
Cdd:PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKMLG---------VPKEER-KQRVKEALELVDLAGFEDRYVDQISGGQQQRV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 168 EIATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARERAV--LMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK11432 146 ALARALILKPKVLLFDEPLSNL---DANLRRSMrekIRELQQQFNItsLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
25-239 |
9.52e-22 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 90.84 E-value: 9.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 25 FGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsfQISAVFPH 104
Cdd:PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR-------RLALLPQH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 LSVLDNVRV----ALQRPNNLStqFWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYG-RKRVLeIATTLALDPKV 179
Cdd:PRK11231 85 HLTPEGITVrelvAYGRSPWLS--LWGRLSAEDN--ARVNQAMEQTRINHLADRRLTDLSGGqRQRAF-LAMVLAQDTPV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 180 LLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQgKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
27-260 |
1.14e-21 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 91.10 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 27 GFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVditktPPDKVARMGLV----RSFQISAVF 102
Cdd:PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ-----PTRQALQKNLVayvpQSEEVDWSF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 PhlsVLDNVRVALQRPNNLStqFWRPISALDRlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:PRK15056 94 P---VLVEDVVMMGRYGHMG--WLRRAKKRDR--QIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 183 DEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHvTVLQRGEILAEGDYATVSQDERVRVAYMGTEEH 260
Cdd:PRK15056 167 DEPFTGVDVKTEARIISLLRELRDEgKTMLVSTHNLGSVTEFCDY-TVMVKGTVLASGPTETTFTAENLELAFSGVLRH 244
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
30-247 |
1.29e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 91.33 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-----ARMGLVRSFQISAVFPH 104
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEikpvrKKVGVVFQFPESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 lSVLDNVRVAlqrPNNLSTQfwrpisaldrlNERAEQLLAS----VGLSKE-RDHIAADLSYGRKRVLEIATTLALDPKV 179
Cdd:PRK13643 101 -TVLKDVAFG---PQNFGIP-----------KEKAEKIAAEklemVGLADEfWEKSPFELSGGQMRRVAIAGILAMEPEV 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 180 LLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD 247
Cdd:PRK13643 166 LVLDEPTAGLDPKARIEMMQLFESIHQSgQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
19-240 |
1.80e-21 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 89.77 E-value: 1.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITktppDKVARMGLVRS--- 95
Cdd:PRK09493 5 KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN----DPKVDERLIRQeag 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 --FQISAVFPHLSVLDNVRVALQRPNNLSTQfwrpisaldRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTL 173
Cdd:PRK09493 81 mvFQQFYLFPHLTALENVMFGPLRVRGASKE---------EAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 174 ALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEgMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGD 219
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
15-244 |
2.00e-21 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 92.83 E-value: 2.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGG----FTAVKNVDLDVHDASVHALIGPNGAGKT----TVFNLLTKFLQPTSGTITLMGVDITKTPPdk 86
Cdd:COG4172 6 LLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSE-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 87 vARMGLVRSFQISAVF--------PHLSVLDNVRVALQRPNNLSTQFWRpisaldrlnERAEQLLASVGLSKERDHIAA- 157
Cdd:COG4172 84 -RELRRIRGNRIAMIFqepmtslnPLHTIGKQIAEVLRLHRGLSGAAAR---------ARALELLERVGIPDPERRLDAy 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 158 --DLSYG-RKRVLeIATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARER--AVLMVEHNLSVVANICQHVTV 229
Cdd:COG4172 154 phQLSGGqRQRVM-IAMALANEPDLLIADEPTTAL---DVTVQAQIldlLKDLQRELgmALLLITHDLGVVRRFADRVAV 229
|
250
....*....|....*
gi 517259721 230 LQRGEILAEGDYATV 244
Cdd:COG4172 230 MRQGEIVEQGPTAEL 244
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
29-217 |
2.65e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 89.76 E-value: 2.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 29 TAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMglvrsfqISAVF------ 102
Cdd:COG1101 20 RALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY-------IGRVFqdpmmg 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 --PHLSVLDNVRVALQR--PNNLStqfwrpiSALDRlNERAE--QLLASVGLSKErDHIAAD---LSYGRKRVLE-IATT 172
Cdd:COG1101 93 taPSMTIEENLALAYRRgkRRGLR-------RGLTK-KRRELfrELLATLGLGLE-NRLDTKvglLSGGQRQALSlLMAT 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 517259721 173 LAlDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNL 217
Cdd:COG1101 164 LT-KPKLLLLDEHTAALDPKTAALVLELTEKIVEENnlTTLMVTHNM 209
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
15-248 |
3.49e-21 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 92.20 E-value: 3.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKfLQPT---SGTITLMGVDITKTPPDKVARMG 91
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGSPLKASNIRDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVRSFQISAVFPHLSVLDNVRVAlqrpNNLSTQFWRpiSALDRLNERAEQLLASVGLSKERD-HIAADLSYGRKRVLEIA 170
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENIFLG----NEITLPGGR--MAYNAMYLRAKNLLRELQLDADNVtRPVGDYGGGQQQLVEIA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLkAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDD 232
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
5-244 |
3.87e-21 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 92.05 E-value: 3.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 5 AIETQEKPRVVLSARGLRRDF-----------GGFTAVKNVDLDVHDASVHALIGPNGAGKTTV-FNLLTkfLQPTSGTI 72
Cdd:COG4172 265 PRPVPPDAPPLLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLgLALLR--LIPSEGEI 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 73 TLMGVDITKTPPDkvARMGLVRSFQIsaVF--------PHLSVLDNVR--VALQRPnnlstqfwrPISALDRLnERAEQL 142
Cdd:COG4172 343 RFDGQDLDGLSRR--ALRPLRRRMQV--VFqdpfgslsPRMTVGQIIAegLRVHGP---------GLSAAERR-ARVAEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 143 LASVGLSKE-RDHIAADLSYG-RKRVlEIATTLALDPKVLLLDEPMAGMgqeDVGVVSSII---REVARER--AVLMVEH 215
Cdd:COG4172 409 LEEVGLDPAaRHRYPHEFSGGqRQRI-AIARALILEPKLLVLDEPTSAL---DVSVQAQILdllRDLQREHglAYLFISH 484
|
250 260
....*....|....*....|....*....
gi 517259721 216 NLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:COG4172 485 DLAVVRALAHRVMVMKDGKVVEQGPTEQV 513
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
19-239 |
4.41e-21 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 88.99 E-value: 4.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsfqi 98
Cdd:COG4604 5 KNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAK--------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 99 savfpHLSVL--DN-------VR--VALQR-PNN---LSTQFWRPIS-ALDRLNeraeqllasvgLSKERDHIAADLSYG 162
Cdd:COG4604 76 -----RLAILrqENhinsrltVRelVAFGRfPYSkgrLTAEDREIIDeAIAYLD-----------LEDLADRYLDELSGG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 163 -RKRVLeIATTLALDPKVLLLDEPM--------AGMGQedvgvvssIIREVARE--RAVLMVEHNLSVVANICQHVTVLQ 231
Cdd:COG4604 140 qRQRAF-IAMVLAQDTDYVLLDEPLnnldmkhsVQMMK--------LLRRLADElgKTVVIVLHDINFASCYADHIVAMK 210
|
....*...
gi 517259721 232 RGEILAEG 239
Cdd:COG4604 211 DGRVVAQG 218
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
19-251 |
7.22e-21 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 88.67 E-value: 7.22e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV--ARMGLVRSF 96
Cdd:PRK11831 11 RGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLytVRKRMSMLF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 97 QISAVFPHLSVLDNVRVALQRPNNLSTQFWRPISALDrlneraeqlLASVGLSKERDHIAADLSYGRKRVLEIATTLALD 176
Cdd:PRK11831 91 QSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMK---------LEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 177 PKVLLLDEPMAGMGQEDVGVVSSIIREVARERAV--LMVEHNLSVVANICQHVTVLQRGEILAEGDYATV--SQDERVR 251
Cdd:PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVtcVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALqaNPDPRVR 240
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
16-251 |
7.52e-21 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 91.13 E-value: 7.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRS 95
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVAlQRPNNLSTqfwrpisaLDR--LNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTL 173
Cdd:PRK11288 85 YQELHLVPEMTVAENLYLG-QLPHKGGI--------VNRrlLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 174 ALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAE-GDYATVSQDERVR 251
Cdd:PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEgRVILYVSHRMEEIFALCDAITVFKDGRYVATfDDMAQVDRDQLVQ 235
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
27-239 |
8.00e-21 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 91.61 E-value: 8.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 27 GFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDItKTPPDKVaRMGLVRSFQISAVFPHLS 106
Cdd:TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAV-RQSLGMCPQHNILFHHLT 1019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVALQrpnnLSTQFWrpisalDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPM 186
Cdd:TIGR01257 1020 VAEHILFYAQ----LKGRSW------EEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 517259721 187 AGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:TIGR01257 1090 SGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
30-239 |
8.50e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 88.92 E-value: 8.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDIT--KTPPD-KVAR--MGLVRSFQISAVFPH 104
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagKKNKKlKPLRkkVGIVFQFPEHQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 lSVLDNVRVAlqrPNNLStqfwrpISALDRLnERAEQLLASVGLSKE-RDHIAADLSYGRKRVLEIATTLALDPKVLLLD 183
Cdd:PRK13634 102 -TVEKDICFG---PMNFG------VSEEDAK-QKAREMIELVGLPEElLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 184 EPMAGM---GQEDV-GVVSSIIREvaRERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK13634 171 EPTAGLdpkGRKEMmEMFYKLHKE--KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-240 |
1.45e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 88.61 E-value: 1.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 17 SARGL-RRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVrs 95
Cdd:COG4586 23 ALKGLfRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFKRRKEFARRIGVV-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 F-QISAVFPHLSVLDNVRVaLQRPNNLSTQFWRpisalDRLNERAEQLlasvGLSKERDHIAADLSYG-RKRVlEIATTL 173
Cdd:COG4586 101 FgQRSQLWWDLPAIDSFRL-LKAIYRIPDAEYK-----KRLDELVELL----DLGELLDTPVRQLSLGqRMRC-ELAAAL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 174 ALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:COG4586 170 LHRPKILFLDEPTIGL---DVVSKEAIrefLKEYNRERgtTILLTSHDMDDIEALCDRVIVIDHGRIIYDGS 238
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
15-248 |
2.33e-20 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 89.60 E-value: 2.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKfLQPT---SGTITLMGVDITKTPPDKVARMG 91
Cdd:PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHgtyEGEIIFEGEELQASNIRDTERAG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LVRSFQISAVFPHLSVLDNVRVAlqrpnNLSTQFWRpiSALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIAT 171
Cdd:PRK13549 84 IAIIHQELALVKELSVLENIFLG-----NEITPGGI--MDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 172 TLALDPKVLLLDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLkAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD 234
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
10-230 |
3.34e-20 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 89.27 E-value: 3.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 10 EKPRVVLSARGLRRDFGGFT-AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVA 88
Cdd:TIGR02857 316 AAPASSLEFSGVSVAYPGRRpALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 89 RmglvrsfQISAV--FPHL---SVLDNVRVAlqRPNNLSTQFWRPISA--LDRLNERAEQllasvGLSKERDHIAADLSY 161
Cdd:TIGR02857 396 D-------QIAWVpqHPFLfagTIAENIRLA--RPDASDAEIREALERagLDEFVAALPQ-----GLDTPIGEGGAGLSG 461
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 162 GRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVL 230
Cdd:TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAAL-ADRIVVL 529
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
10-217 |
4.19e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 88.96 E-value: 4.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 10 EKPRVVLSARGLRRDfGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR 89
Cdd:TIGR02868 331 GKPTLELRDLSAGYP-GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 90 MGLVrsfqiSAVFPHL---SVLDNVRVAlqRPNNLSTQFWRpisALDRLneRAEQLLASV--GLSKERDHIAADLSYGRK 164
Cdd:TIGR02868 410 RVSV-----CAQDAHLfdtTVRENLRLA--RPDATDEELWA---ALERV--GLADWLRALpdGLDTVLGEGGARLSGGER 477
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 517259721 165 RVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNL 217
Cdd:TIGR02868 478 QRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
19-240 |
4.58e-20 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 85.90 E-value: 4.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGvditktppdKVARMglvrsFQI 98
Cdd:COG1134 30 RRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG---------RVSAL-----LEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 99 SAVF-PHLSVLDNVRvalqrpnnlstqfwrpisaldrlneraeqLLASV-GLSKE-----RDHIA--ADLS--------- 160
Cdd:COG1134 96 GAGFhPELTGRENIY-----------------------------LNGRLlGLSRKeidekFDEIVefAELGdfidqpvkt 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 161 -----YGRkrvLEIATTLALDPKVLLLDEPMAgmgqedVGVVS------SIIREVARE-RAVLMVEHNLSVVANICQHVT 228
Cdd:COG1134 147 yssgmRAR---LAFAVATAVDPDILLVDEVLA------VGDAAfqkkclARIRELRESgRTVIFVSHSMGAVRRLCDRAI 217
|
250
....*....|..
gi 517259721 229 VLQRGEILAEGD 240
Cdd:COG1134 218 WLEKGRLVMDGD 229
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
26-239 |
4.93e-20 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 89.07 E-value: 4.93e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-ARMGLVrsFQISAVFpH 104
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLrRQIGVV--PQDTFLF-S 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 LSVLDNVRVAlqRPNNLSTQFWRPI---SALDRLNERAEQLLASVGlskERdhiAADLSYGRKRVLEIATTLALDPKVLL 181
Cdd:COG1132 428 GTIRENIRYG--RPDATDEEVEEAAkaaQAHEFIEALPDGYDTVVG---ER---GVNLSGGQRQRIAIARALLKDPPILI 499
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 182 LDEPmagmgqedvgvVSSI-----------IREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEG 239
Cdd:COG1132 500 LDEA-----------TSALdtetealiqeaLERLMKGRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQG 556
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
16-254 |
4.97e-20 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 88.36 E-value: 4.97e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrs 95
Cdd:PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 fQISAVFPHLSVLDNVR----VALQRPNNLStQFWRPISALDRLNERAeqlLASVGLSKERDHIAADLSYG-RKRVLeIA 170
Cdd:PRK09536 78 -RVASVPQDTSLSFEFDvrqvVEMGRTPHRS-RFDTWTETDRAAVERA---MERTGVAQFADRPVTSLSGGeRQRVL-LA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 171 TTLALDPKVLLLDEPMAGMG-QEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDER 249
Cdd:PRK09536 152 RALAQATPVLLLDEPTASLDiNHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADT 231
|
....*
gi 517259721 250 VRVAY 254
Cdd:PRK09536 232 LRAAF 236
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
18-185 |
5.27e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 88.58 E-value: 5.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 18 ARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLmgvditktPPDkvARMGLVRsfQ 97
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSI--------PKG--LRIGYLP--Q 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 98 ISAVFPHLSVLDNV-------RVALQRPNNLSTQFWRPISALDRLNE---------------RAEQLLASVGLSKE-RDH 154
Cdd:COG0488 69 EPPLDDDLTVLDTVldgdaelRALEAELEELEAKLAEPDEDLERLAElqeefealggweaeaRAEEILSGLGFPEEdLDR 148
|
170 180 190
....*....|....*....|....*....|..
gi 517259721 155 IAADLSYG-RKRVLeIATTLALDPKVLLLDEP 185
Cdd:COG0488 149 PVSELSGGwRRRVA-LARALLSEPDLLLLDEP 179
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
33-236 |
5.75e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 86.81 E-value: 5.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 33 NVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-----ARMGLVRSFQISAVFPHlSV 107
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNlkklrKKVSLVFQFPEAQLFEN-TV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 108 LDNVRVAlqrPNNLStqfwrpiSALDRLNERAEQLLASVGLSKE-RDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPM 186
Cdd:PRK13641 104 LKDVEFG---PKNFG-------FSEDEAKEKALKWLKKVGLSEDlISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 517259721 187 AGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEIL 236
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQKAgHTVILVTHNMDDVAEYADDVLVLEHGKLI 224
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
31-244 |
7.89e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 86.21 E-value: 7.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGvditkTPPDKVARMGLVRSFQISAVFP------- 103
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG-----KPLDYSKRGLLALRQQVATVFQdpeqqif 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 HLSVLDNVRVALQrpnNLSTqfwrpisALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLD 183
Cdd:PRK13638 92 YTDIDSDIAFSLR---NLGV-------PEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 184 EPMAGMGQEDVGVVSSIIRE-VARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:PRK13638 162 EPTAGLDPAGRTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
16-215 |
1.15e-19 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 83.95 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKT---PPDKVARMGl 92
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQrdePHENILYLG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 93 vrsfQISAVFPHLSVLDNVrvalqrpnnlstQFWRPISALDRLNerAEQLLASVGLSKERDHIAADLSYGRKRVLEIATT 172
Cdd:TIGR01189 80 ----HLPGLKPELSALENL------------HFWAAIHGGAQRT--IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 517259721 173 LALDPKVLLLDEPMAGMGQEDVGVVSSIIRE-VARERAVLMVEH 215
Cdd:TIGR01189 142 WLSRRPLWILDEPTTALDKAGVALLAGLLRAhLARGGIVLLTTH 185
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
11-239 |
1.40e-19 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 86.42 E-value: 1.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 11 KPRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARM 90
Cdd:PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 91 GLVRSFqiSAVFPHLSVLDNVRVaLQRPNNLSTqfwRPISALdrlnerAEQLLASVGLSKERDHIAADLSYGRKRVLEIA 170
Cdd:PRK13536 117 GVVPQF--DNLDLEFTVRENLLV-FGRYFGMST---REIEAV------IPSLLEFARLESKADARVSDLSGGMKRRLTLA 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIRE-VARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSlLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
31-235 |
1.90e-19 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 84.06 E-value: 1.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDIT----KTPPDKVARMGlvrsfQISAVFPHlS 106
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISqyehKYLHSKVSLVG-----QEPVLFAR-S 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVALQrpnnlSTQFWRPISALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPM 186
Cdd:cd03248 104 LQDNIAYGLQ-----SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517259721 187 AGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEI 235
Cdd:cd03248 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
16-239 |
3.71e-19 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 82.97 E-value: 3.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGvdiTKTPPdkvarMGLVRS 95
Cdd:cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG---RVSSL-----LGLGGG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQisavfPHLSVLDNVRVALqRPNNLSTQFWRpisalDRLNERAEqlLASVGlskerDHIaaDL-----SYGRKRVLEIA 170
Cdd:cd03220 95 FN-----PELTGRENIYLNG-RLLGLSRKEID-----EKIDEIIE--FSELG-----DFI--DLpvktySSGMKARLAFA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 171 TTLALDPKVLLLDEPMAgmgqedVGVVS------SIIRE-VARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03220 155 IATALEPDILLIDEVLA------VGDAAfqekcqRRLRElLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
13-256 |
4.13e-19 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 83.39 E-value: 4.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 13 RVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGL 92
Cdd:PRK11614 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 93 VRSFQISAVFPHLSVLDNVRVA--LQRPNNLSTQFWRPISALDRLNERaeqllasvglskeRDHIAADLSYGRKRVLEIA 170
Cdd:PRK11614 83 AIVPEGRRVFSRMTVEENLAMGgfFAERDQFQERIKWVYELFPRLHER-------------RIQRAGTMSGGEQQMLAIG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDER 249
Cdd:PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQgMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEA 229
|
....*..
gi 517259721 250 VRVAYMG 256
Cdd:PRK11614 230 VRSAYLG 236
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
25-185 |
4.56e-19 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 85.14 E-value: 4.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 25 FGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPdKVARMGLVrsFQISAVFPH 104
Cdd:PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA-RDRKVGFV--FQHYALFRH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 LSVLDNVRVAL------QRPNnlstqfwrpISALDRlneRAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPK 178
Cdd:PRK10851 89 MTVFDNIAFGLtvlprrERPN---------AAAIKA---KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156
|
....*..
gi 517259721 179 VLLLDEP 185
Cdd:PRK10851 157 ILLLDEP 163
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
7-260 |
8.55e-19 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 85.07 E-value: 8.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 7 ETQEKPRVVLSARGLRRDfggfTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDIT-KTPPD 85
Cdd:COG1129 248 RAAAPGEVVLEVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRiRSPRD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 86 KV-ARMGLV---RsfQISAVFPHLSVLDNVRVAlqrpnNLSTQFWRPISALDRLNERAEQLLASVGL-SKERDHIAADLS 160
Cdd:COG1129 324 AIrAGIAYVpedR--KGEGLVLDLSIRENITLA-----SLDRLSRGGLLDRRRERALAEEYIKRLRIkTPSPEQPVGNLS 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 161 YG-RKRVLeIATTLALDPKVLLLDEPMAGMgqeDVGV---VSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:COG1129 397 GGnQQKVV-LAKWLATDPKVLILDEPTRGI---DVGAkaeIYRLIRELAAEgKAVIVISSELPELLGLSDRILVMREGRI 472
|
250 260
....*....|....*....|....*
gi 517259721 236 LAEGDYATVSQDERVRVAYMGTEEH 260
Cdd:COG1129 473 VGELDREEATEEAIMAAATGGAAAA 497
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
30-239 |
9.36e-19 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 84.70 E-value: 9.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPP---DKVARMGLVRSFQISAVFPHLS 106
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDaelREVRRKKIAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVALQRPNnlstqfwrpISALDRlNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPM 186
Cdd:PRK10070 123 VLDNTAFGMELAG---------INAEER-REKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 187 AGMgqeDVGVVSSIIREVAR-----ERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK10070 193 SAL---DPLIRTEMQDELVKlqakhQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVG 247
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
30-242 |
1.09e-18 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 82.28 E-value: 1.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDI-TKTPPDKVARMGLVRsfQISAVFpHLSVL 108
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVrDYTLASLRRQIGLVS--QDVFLF-NDTVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 109 DNVRVAlqRPNNLSTQF---WRPISALDRLNERAEQLLASVGlskERdhiAADLSYGRKRVLEIATTLALDPKVLLLDEP 185
Cdd:cd03251 94 ENIAYG--RPGATREEVeeaARAANAHEFIMELPEGYDTVIG---ER---GVKLSGGQRQRIAIARALLKDPPILILDEA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 186 MAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVtVLQRGEILAEGDYA 242
Cdd:cd03251 166 TSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIV-VLEDGKIVERGTHE 221
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
15-253 |
6.33e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 80.89 E-value: 6.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDF-GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDItktppdKVARMGLv 93
Cdd:PRK13639 1 ILETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI------KYDKKSL- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 rsfqisavfphLSVLDNVRVALQRPNNlstQFWRPISALD-------------RLNERAEQLLASVGLSKERDHIAADLS 160
Cdd:PRK13639 74 -----------LEVRKTVGIVFQNPDD---QLFAPTVEEDvafgplnlglskeEVEKRVKEALKAVGMEGFENKPPHHLS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 161 YGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVE-HNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIIStHDVDLVPVYADKVYVMSDGKIIKEG 219
|
250
....*....|....*
gi 517259721 240 DYATV-SQDERVRVA 253
Cdd:PRK13639 220 TPKEVfSDIETIRKA 234
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
30-239 |
9.93e-18 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 79.17 E-value: 9.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-ARMGLVrsfqisAVFPHL--- 105
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLrRNIGYV------PQDVTLfyg 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 106 SVLDNVRVAlqrpnnlstqfwRPISALDRLNERAEqlLASV---------GLSKERDHIAADLSYGRKRVLEIATTLALD 176
Cdd:cd03245 93 TLRDNITLG------------APLADDERILRAAE--LAGVtdfvnkhpnGLDLQIGERGRGLSGGQRQAVALARALLND 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 177 PKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVAnICQHVTVLQRGEILAEG 239
Cdd:cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRIVADG 220
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
20-238 |
1.02e-17 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 80.12 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 20 GLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTppDKVARMGLVRSFQ-- 97
Cdd:PRK10419 17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL--NRAQRKAFRRDIQmv 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 98 ----ISAVFPHLSVLDNVRVALQRPNNLstqfwrpiSALDRLnERAEQLLASVGLSKE-RDHIAADLSYGRKRVLEIATT 172
Cdd:PRK10419 95 fqdsISAVNPRKTVREIIREPLRHLLSL--------DKAERL-ARASEMLRAVDLDDSvLDKRPPQLSGGQLQRVCLARA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 173 LALDPKVLLLDEPMAGMgqeDVGVVSSIIREVARER-----AVLMVEHNLSVVANICQHVTVLQRGEILAE 238
Cdd:PRK10419 166 LAVEPKLLILDEAVSNL---DLVLQAGVIRLLKKLQqqfgtACLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
45-248 |
1.11e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 82.20 E-value: 1.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 45 ALIGPNGAGKTTVFNLLTKFLqPTSGTITLMGVDITKTPPDKVARmglvrsfQISAV-----FPHLSVLDNvrVALQRPN 119
Cdd:PRK11174 380 ALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRK-------HLSWVgqnpqLPHGTLRDN--VLLGNPD 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 120 NLSTQFWrpiSALDR--LNERAEQLlaSVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVV 197
Cdd:PRK11174 450 ASDEQLQ---QALENawVSEFLPLL--PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLV 524
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 517259721 198 SSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:PRK11174 525 MQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQAG 574
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
30-239 |
1.50e-17 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 79.67 E-value: 1.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDIT-KTPPDKVARMGLVrsFQ-ISAVFPHLSV 107
Cdd:PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSeETVWDVRRQVGMV--FQnPDNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 108 LDNVRVALQrpNNlstQFWRpisalDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMA 187
Cdd:PRK13635 100 QDDVAFGLE--NI---GVPR-----EEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 188 ---GMGQEDvgvVSSIIREVARERA--VLMVEHNLSVVANiCQHVTVLQRGEILAEG 239
Cdd:PRK13635 170 mldPRGRRE---VLETVRQLKEQKGitVLSITHDLDEAAQ-ADRVIVMNKGEILEEG 222
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
15-233 |
2.98e-17 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 80.60 E-value: 2.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKfLQPT---SGTITLMG-VDITKTPPDKVARm 90
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYPHgsyEGEILFDGeVCRFKDIRDSEAL- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 91 GLVRSFQISAVFPHLSVLDNVRVAlqrpNNLSTqfwRPISALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIA 170
Cdd:NF040905 79 GIVIIHQELALIPYLSIAENIFLG----NERAK---RGVIDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVaRERAV--LMVEHNLSVVANICQHVTVLQRG 233
Cdd:NF040905 152 KALSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGItsIIISHKLNEIRRVADSITVLRDG 215
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-239 |
3.75e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 78.60 E-value: 3.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSG-----TITLMGVDI--TKTPPDKVA 88
Cdd:PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIfnYRDVLEFRR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 89 RMGLVrsFQISAVFPhLSVLDNVRVALQRPNNLSTQFWRPIsaldrlnerAEQLLASVGL-SKERDHIAAD---LSYGRK 164
Cdd:PRK14271 102 RVGML--FQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGV---------AQARLTEVGLwDAVKDRLSDSpfrLSGGQQ 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 165 RVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEG 244
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
15-247 |
4.18e-17 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 78.14 E-value: 4.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTvfnlLTKFL------QPTSGTITLMGVDITKTPPDKVA 88
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKST----LSKVIaghpayKILEGDILFKGESILDLEPEERA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 89 RMGLVRSFQISAVFPHLSVLDNVRVAL---QRPNNLSTQfwRPISALDRLNERaeqlLASVGLSK---ERDhIAADLSYG 162
Cdd:CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYnskRKFQGLPEL--DPLEFLEIINEK----LKLVGMDPsflSRN-VNEGFSGG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 163 RKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVAR-ERAVLMVEHNLSVVANIC-QHVTVLQRGEILAEGD 240
Cdd:CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTsENSIILITHYQRLLDYIKpDYVHVMQNGKIIKTGD 235
|
....*..
gi 517259721 241 yATVSQD 247
Cdd:CHL00131 236 -AELAKE 241
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
21-245 |
5.35e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 79.85 E-value: 5.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 21 LRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLL--TKFLQPTSGTI-------------------------- 72
Cdd:TIGR03269 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLrgMDQYEPTSGRIiyhvalcekcgyverpskvgepcpvc 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 73 --TLMGVDITKTPPDKVARMGLVRSFQIS-----AVFPHLSVLDNVRVALQRPNnlstqfWRPISALDRlnerAEQLLAS 145
Cdd:TIGR03269 86 ggTLEPEEVDFWNLSDKLRRRIRKRIAIMlqrtfALYGDDTVLDNVLEALEEIG------YEGKEAVGR----AVDLIEM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 146 VGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMV--EHNLSVVANI 223
Cdd:TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVltSHWPEVIEDL 235
|
250 260
....*....|....*....|..
gi 517259721 224 CQHVTVLQRGEILAEGDYATVS 245
Cdd:TIGR03269 236 SDKAIWLENGEIKEEGTPDEVV 257
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
14-217 |
6.42e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 77.90 E-value: 6.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 14 VVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTV---FNLLTKFLQP--TSGTITLMGVDITKTPPDKVA 88
Cdd:PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIlrcFNRLNDLIPGfrVEGKVTFHGKNLYAPDVDPVE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 89 ---RMGLVrsFQISAVFPHlSVLDNVRVAlQRPNNLSTQfwrpisaLDRLNERAeqlLASVGLSKE-RDHI---AADLSY 161
Cdd:PRK14243 89 vrrRIGMV--FQKPNPFPK-SIYDNIAYG-ARINGYKGD-------MDELVERS---LRQAALWDEvKDKLkqsGLSLSG 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 162 GRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNL 217
Cdd:PRK14243 155 GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
14-244 |
4.55e-16 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 76.16 E-value: 4.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 14 VVLSARGLRRDF----GGFT------AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtp 83
Cdd:PRK11308 4 PLLQAIDLKKHYpvkrGLFKperlvkALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 84 PDKVARMGLVRSFQIsaVF--PHLSVldN----VRVALQRPNNLSTQfwrpISALDRlNERAEQLLASVGLSKER----D 153
Cdd:PRK11308 82 ADPEAQKLLRQKIQI--VFqnPYGSL--NprkkVGQILEEPLLINTS----LSAAER-REKALAMMAKVGLRPEHydryP 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 154 HIaadLSYGRKRVLEIATTLALDPKVLLLDEPMAGMgqeDVGV---VSSIIREVARE--RAVLMVEHNLSVVANICQHVT 228
Cdd:PRK11308 153 HM---FSGGQRQRIAIARALMLDPDVVVADEPVSAL---DVSVqaqVLNLMMDLQQElgLSYVFISHDLSVVEHIADEVM 226
|
250
....*....|....*.
gi 517259721 229 VLQRGEILAEGDYATV 244
Cdd:PRK11308 227 VMYLGRCVEKGTKEQI 242
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
13-239 |
4.82e-16 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 75.43 E-value: 4.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 13 RVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFL--QPTSGT-ITLMG----------VDI 79
Cdd:PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgDKSAGShIELLGrtvqregrlaRDI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 80 TKTPpdkvARMGLVrsFQISAVFPHLSVLDNVRV-ALQrpnnlSTQFWRP-ISALDRLN-ERAEQLLASVGLSKERDHIA 156
Cdd:PRK09984 82 RKSR----ANTGYI--FQQFNLVNRLSVLENVLIgALG-----STPFWRTcFSWFTREQkQRALQALTRVGMVHFAHQRV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 157 ADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVE--HNLSVVANICQHVTVLQRGE 234
Cdd:PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVtlHQVDYALRYCERIVALRQGH 230
|
....*
gi 517259721 235 ILAEG 239
Cdd:PRK09984 231 VFYDG 235
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
31-223 |
5.71e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 75.07 E-value: 5.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTS-----GTITLMGVDITKTppdkvaRMGLVR-SFQISAVFPH 104
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYER------RVNLNRlRRQVSMVHPK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 -----LSVLDNVRVALQRPNnlstqfWRPISALDRLNERAEQLLASVGLSKERDHIAA-DLSYGRKRVLEIATTLALDPK 178
Cdd:PRK14258 97 pnlfpMSVYDNVAYGVKIVG------WRPKLEIDDIVESALKDADLWDEIKHKIHKSAlDLSGGQQQRLCIARALAVKPK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 517259721 179 VLLLDEPMAGMGQEDVGVVSSIIREVA--RERAVLMVEHNLSVVANI 223
Cdd:PRK14258 171 VLLMDEPCFGLDPIASMKVESLIQSLRlrSELTMVIVSHNLHQVSRL 217
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
32-248 |
6.83e-16 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 77.07 E-value: 6.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 32 KNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtppdkvarmglvrsfqisavFPHLSVLDNV 111
Cdd:TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ--------------------YDHHYLHRQV 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 112 RVALQRPNNLSTQFWRPIS-ALDRLNEraEQLLASVGLSKERDHIAAD--------------LSYGRKRVLEIATTLALD 176
Cdd:TIGR00958 558 ALVGQEPVLFSGSVRENIAyGLTDTPD--EEIMAAAKAANAHDFIMEFpngydtevgekgsqLSGGQKQRIAIARALVRK 635
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 177 PKVLLLDEPMAGMgqeDVGVVSSIIREVAR-ERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:TIGR00958 636 PRVLILDEATSAL---DAECEQLLQESRSRaSRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
16-235 |
7.01e-16 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 74.71 E-value: 7.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTItLMGvditkTPPDKVARMGLVRS 95
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAG-----TAPLAEAREDTRLM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQISAVFPHLSVLDNVRVALqRPNnlstqfWRPisaldrlneRAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLAL 175
Cdd:PRK11247 87 FQDARLLPWKKVIDNVGLGL-KGQ------WRD---------AALQALAAVGLADRANEWPAALSGGQKQRVALARALIH 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 176 DPKVLLLDEPMAGMGQ----EDVGVVSSIIREvaRERAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:PRK11247 151 RPGLLLLDEPLGALDAltriEMQDLIESLWQQ--HGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
30-233 |
8.41e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 76.98 E-value: 8.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVrsfqisavfPHLSVLD 109
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYC---------PQFDAID 2024
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 110 NVRVALQRPNNLSTQFWRPISALDRLnerAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGM 189
Cdd:TIGR01257 2025 DLLTGREHLYLYARLRGVPAEEIEKV---ANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517259721 190 GQEDV----GVVSSIIREvarERAVLMVEHNLSVVANICQHVTVLQRG 233
Cdd:TIGR01257 2102 DPQARrmlwNTIVSIIRE---GRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
15-216 |
1.01e-15 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 73.37 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKT-PPDKVARMGlv 93
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPdVAEACHYLG-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 rsfQISAVFPHLSVLDNVrvalqrpnnlstQFWRPIsaLDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTL 173
Cdd:PRK13539 80 ---HRNAMKPALTVAENL------------EFWAAF--LGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLL 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 517259721 174 ALDPKVLLLDEPMAGMGQEDVGVVSSIIRE-VARERAVLMVEHN 216
Cdd:PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAhLAQGGIVIAATHI 186
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
30-250 |
1.56e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 74.26 E-value: 1.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-ARMGLVrsFQ------ISAvf 102
Cdd:PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIrKKIGII--FQnpdnqfIGA-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 phlSVLDNVRVALQRpNNLSTQFWRPIsaldrLNERAEQllasVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:PRK13632 100 ---TVEDDIAFGLEN-KKVPPKKMKDI-----IDDLAKK----VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 183 DEPMAgM----GQEDvgvVSSIIREVARER--AVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYATVSQDERV 250
Cdd:PRK13632 167 DESTS-MldpkGKRE---IKKIMVDLRKTRkkTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILNNKEI 235
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
30-239 |
1.60e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 74.45 E-value: 1.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTS---GTITLMGVDIT-KTPPDKVARMGLVrsFQ-ISAVFPH 104
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTaKTVWDIREKVGIV--FQnPDNQFVG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 105 LSVLDNVRVALQrpnnlSTQFWRPisaldRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDE 184
Cdd:PRK13640 100 ATVGDDVAFGLE-----NRAVPRP-----EMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 185 PMAGMGQEDVGVVSSIIREvareravLMVEHNLSVV--------ANICQHVTVLQRGEILAEG 239
Cdd:PRK13640 170 STSMLDPAGKEQILKLIRK-------LKKKNNLTVIsithdideANMADQVLVLDDGKLLAQG 225
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
7-249 |
1.78e-15 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 75.63 E-value: 1.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 7 ETQEKPRVVLSARGLrrDFG----GFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKT 82
Cdd:PRK11160 330 STAAADQVSLTLNNV--SFTypdqPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADY 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 83 PPDKVARMGLVRSfQISAVFPHlSVLDNVRVALQRPNNlstqfwrpisaldrlnERAEQLLASVGLSKerdHIAAD---- 158
Cdd:PRK11160 408 SEAALRQAISVVS-QRVHLFSA-TLRDNLLLAAPNASD----------------EALIEVLQQVGLEK---LLEDDkgln 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 159 ---------LSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANIcQHVTV 229
Cdd:PRK11160 467 awlgeggrqLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF-DRICV 545
|
250 260
....*....|....*....|.
gi 517259721 230 LQRGEILAEGDYAT-VSQDER 249
Cdd:PRK11160 546 MDNGQIIEQGTHQElLAQQGR 566
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
15-240 |
4.74e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 72.50 E-value: 4.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKF--LQP---TSGTITLMGVDITKTPPDKV-- 87
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPevtITGSIVYNGHNIYSPRTDTVdl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 88 -ARMGLVrsFQISAVFPhLSVLDNVRVALqRPNNLSTQfwrpisalDRLNERAEQLLASVGLSKE-RDHI---AADLSYG 162
Cdd:PRK14239 85 rKEIGMV--FQQPNPFP-MSIYENVVYGL-RLKGIKDK--------QVLDEAVEKSLKGASIWDEvKDRLhdsALGLSGG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 163 RKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
27-239 |
4.88e-15 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 72.26 E-value: 4.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 27 GFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARM-GLVRsfQISAVFpHL 105
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAiGVVP--QDTVLF-ND 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 106 SVLDNVRVAlqRPNNLSTQFWRPISAL---DRLNERAEQLLASVGlskERdhiAADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:cd03253 90 TIGYNIRYG--RPDATDEEVIEAAKAAqihDKIMRFPDGYDTIVG---ER---GLKLSGGEKQRVAIARAILKNPPILLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 183 DEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEG 239
Cdd:cd03253 162 DEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERG 217
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
30-246 |
5.04e-15 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 74.23 E-value: 5.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITktppdKVARMGLVRSfqISAVF--PHL-- 105
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR-----TVTRASLRRN--IAVVFqdAGLfn 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 106 -SVLDNVRVAlqRPNNLSTQFWRPIS---ALDRLNERAEQLLASVGlskERdhiAADLSYGRKRVLEIATTLALDPKVLL 181
Cdd:PRK13657 423 rSIEDNIRVG--RPDATDEEMRAAAEraqAHDFIERKPDGYDTVVG---ER---GRQLSGGERQRLAIARALLKDPPILI 494
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 182 LDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYATVSQ 246
Cdd:PRK13657 495 LDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDELVA 558
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
16-215 |
5.52e-15 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 71.37 E-value: 5.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGvditktPPDKVARMGLVRS 95
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG------GPLDFQRDSIARG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 96 FQisavfpHLSVLDNVRVALQRPNNLstQFWRPISAldrlNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLAL 175
Cdd:cd03231 75 LL------YLGHAPGIKTTLSVLENL--RFWHADHS----DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS 142
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 517259721 176 DPKVLLLDEPMAGMGQEDVGVVSSIIR-EVARERAVLMVEH 215
Cdd:cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAgHCARGGMVVLTTH 183
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
25-239 |
7.40e-15 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 72.33 E-value: 7.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 25 FGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVA-RMGLVRSfqiSAVFP 103
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVArRIGLLAQ---NATTP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 HLSVLDNVRVALQRPNNLSTQFWRPISAldrlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLD 183
Cdd:PRK10253 94 GDITVQELVARGRYPHQPLFTRWRKEDE-----EAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 184 EPMAGMGQEDVGVVSSIIREVARERAVLM--VEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK10253 169 EPTTWLDISHQIDLLELLSELNREKGYTLaaVLHDLNQACRYASHLIALREGKIVAQG 226
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
28-249 |
8.05e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 72.43 E-value: 8.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 28 FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtppDKVARMGLVRSFQISAVFPHLSV 107
Cdd:PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKN---KKKTKEKEKVLEKLVIQKTRFKK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 108 LDNVRvALQRPNNLSTQF---------------WRPIS---ALDRLNERAEQLLASVGLSKER-DHIAADLSYGRKRVLE 168
Cdd:PRK13651 97 IKKIK-EIRRRVGVVFQFaeyqlfeqtiekdiiFGPVSmgvSKEEAKKRAAKYIELVGLDESYlQRSPFELSGGQKRRVA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 169 IATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD 247
Cdd:PRK13651 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQgKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255
|
..
gi 517259721 248 ER 249
Cdd:PRK13651 256 NK 257
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
32-242 |
9.85e-15 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 71.42 E-value: 9.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 32 KNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-ARMGLVRsfQISAVFPhLSVLDN 110
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLrSQIGLVS--QEPVLFD-GTIAEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 111 VRvaLQRPNNLSTQFWRPI---SALDRLNERAEQLLASVGlskERdhiAADLSYGRKRVLEIATTLALDPKVLLLDEPMA 187
Cdd:cd03249 97 IR--YGKPDATDEEVEEAAkkaNIHDFIMSLPDGYDTLVG---ER---GSQLSGGQKQRIAIARALLRNPKILLLDEATS 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 188 GMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYA 242
Cdd:cd03249 169 ALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHD 222
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
16-239 |
1.20e-14 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 71.50 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPpdkVARMG---- 91
Cdd:PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRD---LYALSeaer 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 --LVRSfqiSAVFPHLSVLDNVRVALQRPNN----LSTQFWRPISaldRLNERAEQLLASVGLSKER-DHIAADLSYGRK 164
Cdd:PRK11701 84 rrLLRT---EWGFVHQHPRDGLRMQVSAGGNigerLMAVGARHYG---DIRATAGDWLERVEIDAARiDDLPTTFSGGMQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 165 RVLEIATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGL---DVSVQARLldlLRGLVRELglAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
43-260 |
1.45e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 71.36 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 43 VHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsfQISAVFPHLSVLD--NVR--VALQR- 117
Cdd:PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-------KVAYLPQQLPAAEgmTVRelVAIGRy 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 118 PnnlstqfWRpiSALDRLN----ERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQED 193
Cdd:PRK10575 112 P-------WH--GALGRFGaadrEKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 194 VGVVSSIIREVARERA--VLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRVAY---MGTEEH 260
Cdd:PRK10575 183 QVDVLALVHRLSQERGltVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYgipMGILPH 254
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
15-248 |
1.84e-14 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 70.98 E-value: 1.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLT--KFLQPTSGTITLMGVDITKTPPDKVARMGL 92
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAgrEDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 93 VRSFQISAVFPHLSvldnVRVALQRPNNlSTQFWRPISALDR------LNERAEQLLASVGLSKERDHIAadLSYGRKRV 166
Cdd:PRK09580 81 FMAFQYPVEIPGVS----NQFFLQTALN-AVRSYRGQEPLDRfdfqdlMEEKIALLKMPEDLLTRSVNVG--FSGGEKKR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 167 LEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANI-CQHVTVLQRGEILAEGDYATV 244
Cdd:PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGkRSFIIVTHYQRILDYIkPDYVHVLYQGRIVKSGDFTLV 233
|
....
gi 517259721 245 SQDE 248
Cdd:PRK09580 234 KQLE 237
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
28-240 |
1.95e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 71.81 E-value: 1.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 28 FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITL----MGVDITKTPPDKVARMGLVRSFQ-----I 98
Cdd:PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyIGDKKNNHELITNPYSKKIKNFKelrrrV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 99 SAVF--PHLSVL-DNVR-------VALQRPNNlstqfwrpisaldRLNERAEQLLASVGLSK---ERDHIaaDLSYGRKR 165
Cdd:PRK13631 119 SMVFqfPEYQLFkDTIEkdimfgpVALGVKKS-------------EAKKLAKFYLNKMGLDDsylERSPF--GLSGGQKR 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 166 VLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:PRK13631 184 RVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAkANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
16-237 |
2.08e-14 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 72.45 E-value: 2.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDF----GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARM- 90
Cdd:PRK10535 5 LELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 91 ----GLVrsFQISAVFPHLSVLDNVRVAlqrpnnlstQFWRPISALDRLnERAEQLLASVGLSKERDHIAADLSYGRKRV 166
Cdd:PRK10535 85 rehfGFI--FQRYHLLSHLTAAQNVEVP---------AVYAGLERKQRL-LRAQELLQRLGLEDRVEYQPSQLSGGQQQR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 167 LEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVaRERA--VLMVEHNlSVVANICQHVTVLQRGEILA 237
Cdd:PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGhtVIIVTHD-PQVAAQAERVIEIRDGEIVR 223
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
31-219 |
2.31e-14 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 70.23 E-value: 2.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVA-----RMGLVrsFQISAVFPHL 105
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAelrnqKLGFI--YQFHHLLPDF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 106 SVLDNVRVALQRPNnlstqfwrpiSALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEP 185
Cdd:PRK11629 103 TALENVAMPLLIGK----------KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172
|
170 180 190
....*....|....*....|....*....|....*.
gi 517259721 186 MAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSV 219
Cdd:PRK11629 173 TGNLDARNADSIFQLLGELNRLQgtAFLVVTHDLQL 208
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
43-254 |
3.46e-14 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 69.87 E-value: 3.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 43 VHaLIGPNGAGKTTvfnLLTKF--LQPTSGTITLMGVDITKTPPDKVARMglvRSF---QISAVFphlsvldNVRV---- 113
Cdd:COG4138 25 IH-LIGPNGAGKST---LLARMagLLPGQGEILLNGRPLSDWSAAELARH---RAYlsqQQSPPF-------AMPVfqyl 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 114 ALQRPNNLSTQfwrpiSALDRLNERAEQLlasvGLSKERDHIAADLSYG---RKR----VLEIATTLALDPKVLLLDEPM 186
Cdd:COG4138 91 ALHQPAGASSE-----AVEQLLAQLAEAL----GLEDKLSRPLTQLSGGewqRVRlaavLLQVWPTINPEGQLLLLDEPM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 187 AGMgqeDVG---VVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRVAY 254
Cdd:COG4138 162 NSL---DVAqqaALDRLLRELCQQgITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVF 230
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
30-235 |
4.27e-14 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 68.98 E-value: 4.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvarmgLVRSFQISAVFPHLsVLD 109
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED-----LRSSLTIIPQDPTL-FSG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 110 NVRvalqrpnnlstqfwrpiSALDRLNERA-EQLLASVGLSKERDhiaaDLSYGRKRVLEIATTLALDPKVLLLDEPMAG 188
Cdd:cd03369 97 TIR-----------------SNLDPFDEYSdEEIYGALRVSEGGL----NLSQGQRQLLCLARALLKRPRVLVLDEATAS 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 517259721 189 MGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEI 235
Cdd:cd03369 156 IDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEV 201
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
7-185 |
5.68e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 70.86 E-value: 5.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 7 ETQEKPRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLmGVDItktppdK 86
Cdd:COG0488 307 PPERLGKKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV------K 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 87 VArmglvrSF-QISAVF-PHLSVLDNVRvalQRPNNLSTQFWRpiSALDRLNERAEQLLASVGlskerdhiaaDLSYGRK 164
Cdd:COG0488 380 IG------YFdQHQEELdPDKTVLDELR---DGAPGGTEQEVR--GYLGRFLFSGDDAFKPVG----------VLSGGEK 438
|
170 180
....*....|....*....|.
gi 517259721 165 RVLEIATTLALDPKVLLLDEP 185
Cdd:COG0488 439 ARLALAKLLLSPPNVLLLDEP 459
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
19-237 |
5.70e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 70.91 E-value: 5.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRSFQI 98
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 99 SAVFPHLSVLDNvrVALQRpnnlstqfwRPISAL----DRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLA 174
Cdd:PRK10982 82 LNLVLQRSVMDN--MWLGR---------YPTKGMfvdqDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 175 LDPKVLLLDEPMAGMGQEDVGVVSSIIREVaRER--AVLMVEHNLSVVANICQHVTVLQRGEILA 237
Cdd:PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKL-KERgcGIVYISHKMEEIFQLCDEITILRDGQWIA 214
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
3-220 |
6.16e-14 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.97 E-value: 6.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 3 VSAIETQEKPRVVLSARGLRRDFGGFTavknvdLDVHDASVH-----ALIGPNGAGKTTVFNLLTKFLQPTSGTITlMGV 77
Cdd:COG1245 329 VHAPRREKEEETLVEYPDLTKSYGGFS------LEVEGGEIRegevlGIVGPNGIGKTTFAKILAGVLKPDEGEVD-EDL 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 78 DITKTP----PDkvaRMGLVRSFQISAVfphlsvldnvrvalqrPNNLSTQFWRpisaldrlNERAEQLlasvGLSKERD 153
Cdd:COG1245 402 KISYKPqyisPD---YDGTVEEFLRSAN----------------TDDFGSSYYK--------TEIIKPL----GLEKLLD 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 154 HIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVV 220
Cdd:COG1245 451 KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRgkTAMVVDHDIYLI 519
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
4-240 |
6.98e-14 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 70.14 E-value: 6.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 4 SAIETQEKPRVVLSARGLRRDF----GGFTAVKNVDLDVHDASVHALIGPNGAGKT-TVFNLLtKFLQP---TSGTITLM 75
Cdd:PRK09473 1 TVPLAQQQADALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALM-GLLAAngrIGGSATFN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 76 GVDITKTPPDKVARMglvRSFQISAVF--------PHLSVLDNVRVALQRPNNLSTQfwrpiSALdrlnERAEQLLASVG 147
Cdd:PRK09473 80 GREILNLPEKELNKL---RAEQISMIFqdpmtslnPYMRVGEQLMEVLMLHKGMSKA-----EAF----EESVRMLDAVK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 148 LSKERDHIAA---DLSYG-RKRVLeIATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARE--RAVLMVEHNLS 218
Cdd:PRK09473 148 MPEARKRMKMyphEFSGGmRQRVM-IAMALLCRPKLLIADEPTTAL---DVTVQAQImtlLNELKREfnTAIIMITHDLG 223
|
250 260
....*....|....*....|..
gi 517259721 219 VVANICQHVTVLQRGEILAEGD 240
Cdd:PRK09473 224 VVAGICDKVLVMYAGRTMEYGN 245
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
31-239 |
7.74e-14 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 68.84 E-value: 7.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQP---TSGTITLMGVDITktpPDKVA-RMGLVRSFQISAvfPHLS 106
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPRK---PDQFQkCVAYVRQDDILL--PGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVALQ-RPNNLSTQFWRpisaldrlNERAEQ-LLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDE 184
Cdd:cd03234 98 VRETLTYTAIlRLPRKSSDAIR--------KKRVEDvLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 185 PMAGMGQEDVGVVSSIIREVARE-RAVLMVEHN-LSVVANICQHVTVLQRGEILAEG 239
Cdd:cd03234 170 PTSGLDSFTALNLVSTLSQLARRnRIVILTIHQpRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
15-233 |
8.04e-14 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 68.61 E-value: 8.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDF-----GG--FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLM----GVDITKTP 83
Cdd:COG4778 4 LLEVENLSKTFtlhlqGGkrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdggWVDLAQAS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 84 PDKVAR-----MGLVRSFQisAVFPHLSVLDNVRVALQRpnnlstQFWRPISALdrlnERAEQLLASVGLSKERDHIA-A 157
Cdd:COG4778 84 PREILAlrrrtIGYVSQFL--RVIPRVSALDVVAEPLLE------RGVDREEAR----ARARELLARLNLPERLWDLPpA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 158 DLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRG 233
Cdd:COG4778 152 TFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAkARGTAIIGIFHDEEVREAVADRVVDVTPF 228
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
13-253 |
1.71e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 69.81 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 13 RVVLSARGL-RRDFGgftAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDIT-KTPPDKVAR- 89
Cdd:PRK09700 263 ETVFEVRNVtSRDRK---KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISpRSPLDAVKKg 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 90 MGLV-RSFQISAVFPHLSVLDNVRVAlqrpNNLSTQFWRpiSALDRLNERAEQLLASvglsKERDHIA----------AD 158
Cdd:PRK09700 340 MAYItESRRDNGFFPNFSIAQNMAIS----RSLKDGGYK--GAMGLFHEVDEQRTAE----NQRELLAlkchsvnqniTE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 159 LSYGRKRVLEIATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARE-RAVLMVEHNLSVVANICQHVTVLQRGE 234
Cdd:PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGI---DVGAKAEIykvMRQLADDgKVILMVSSELPEIITVCDRIAVFCEGR 486
|
250 260
....*....|....*....|
gi 517259721 235 ILAE-GDYATVSQDERVRVA 253
Cdd:PRK09700 487 LTQIlTNRDDMSEEEIMAWA 506
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
27-251 |
1.79e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 68.48 E-value: 1.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 27 GFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR--MGLVrsFQISAV-FP 103
Cdd:PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRklVGIV--FQNPETqFV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 HLSVLDNVRVAlqrPNNLSTQfwrPIsaldRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLD 183
Cdd:PRK13644 92 GRTVEEDLAFG---PENLCLP---PI----EIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 184 EpMAGMGQEDVG--VVSSIIREVARERAVLMVEHNLSVVaNICQHVTVLQRGEILAEGDYATVSQDERVR 251
Cdd:PRK13644 162 E-VTSMLDPDSGiaVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDVSLQ 229
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
13-248 |
2.03e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 69.29 E-value: 2.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 13 RVVLSARGLR-RDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMG 91
Cdd:COG3845 255 EVVLEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 92 LvrSF-----QISAVFPHLSVLDNVRVALQRPNNLSTQFWrpisaLDR--LNERAEQLLA--SVgLSKERDHIAADLSYG 162
Cdd:COG3845 335 V--AYipedrLGRGLVPDMSVAENLILGRYRRPPFSRGGF-----LDRkaIRAFAEELIEefDV-RTPGPDTPARSLSGG 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 163 -RKRVLeIATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREvARER--AVLMVEHNLSVVANICQHVTVLQRGEIL 236
Cdd:COG3845 407 nQQKVI-LARELSRDPKLLIAAQPTRGL---DVGAIEFIhqrLLE-LRDAgaAVLLISEDLDEILALSDRIAVMYEGRIV 481
|
250
....*....|..
gi 517259721 237 AEGDYATVSQDE 248
Cdd:COG3845 482 GEVPAAEATREE 493
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
34-238 |
2.29e-13 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 67.50 E-value: 2.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 34 VDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARM-----GLVrsFQISAVFPHLSVL 108
Cdd:PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLrakhvGFV--FQSFMLIPTLNAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 109 DNVRV-ALQRPNNLSTQfwrpisaldrlNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMA 187
Cdd:PRK10584 107 ENVELpALLRGESSRQS-----------RNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTG 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 517259721 188 GMGQEDVGVVSSIIREVARERA--VLMVEHNLSVVANiCQHVTVLQRGEILAE 238
Cdd:PRK10584 176 NLDRQTGDKIADLLFSLNREHGttLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
19-187 |
2.55e-13 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 68.90 E-value: 2.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 19 RGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVArMGLVrsFQI 98
Cdd:PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG-VGMV--FQS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 99 SAVFPHLSVLDNVRVALQRPNNLSTQFWRpisaldRLNERAEQLlasvGLSKERDHIAADLSYG-RKRVlEIATTLALDP 177
Cdd:PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQ------RVNQVAEVL----QLAHLLDRKPKALSGGqRQRV-AIGRTLVAEP 152
|
170
....*....|
gi 517259721 178 KVLLLDEPMA 187
Cdd:PRK11000 153 SVFLLDEPLS 162
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
45-260 |
2.63e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 69.31 E-value: 2.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 45 ALIGPNGAGKTTVFNLLTkFLQPT----SGTITLMGVDITKtpPDKVARMGLVRSFQIsaVFPHLSVLD--NVRVALQRP 118
Cdd:TIGR00955 55 AVMGSSGAGKTTLMNALA-FRSPKgvkgSGSVLLNGMPIDA--KEMRAISAYVQQDDL--FIPTLTVREhlMFQAHLRMP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 119 NNLSTQFWRpisaldrlnERAEQLLASVGLSKERDHIAAD------LSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQE 192
Cdd:TIGR00955 130 RRVTKKEKR---------ERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSF 200
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 193 DVGVVSSIIREVA-RERAVLMVEHNLS-----VVANICqhvtvlqrgeILAEGdyatvsqdervRVAYMGTEEH 260
Cdd:TIGR00955 201 MAYSVVQVLKGLAqKGKTIICTIHQPSselfeLFDKII----------LMAEG-----------RVAYLGSPDQ 253
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
28-239 |
2.78e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 68.11 E-value: 2.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 28 FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTiTLMG-----VDITKTPPDKVAR--MGLVrsFQisa 100
Cdd:PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGdyaipANLKKIKEVKRLRkeIGLV--FQ--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 101 vFPHLSVLDNV---RVALQrPNNLSTQfwrpisaLDRLNERAEQLLASVGLSKERDHIAA-DLSYGRKRVLEIATTLALD 176
Cdd:PRK13645 98 -FPEYQLFQETiekDIAFG-PVNLGEN-------KQEAYKKVPELLKLVQLPEDYVKRSPfELSGGQKRRVALAGIIAMD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 177 PKVLLLDEPMAGM---GQEDVGVVSSIIREVARERaVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK13645 169 GNTLVLDEPTGGLdpkGEEDFINLFERLNKEYKKR-IIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
29-239 |
4.24e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 67.42 E-value: 4.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 29 TAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPP--DKVARMGLVrsFQISavfphls 106
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENlwDIRNKAGMV--FQNP------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 vlDNVRVALQ-------RPNNLSTQfwrPisalDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKV 179
Cdd:PRK13633 95 --DNQIVATIveedvafGPENLGIP---P----EEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 180 LLLDEPMAGM---GQEDvgvVSSIIREVARER--AVLMVEHNLSVVANiCQHVTVLQRGEILAEG 239
Cdd:PRK13633 166 IIFDEPTAMLdpsGRRE---VVNTIKELNKKYgiTIILITHYMEEAVE-ADRIIVMDSGKVVMEG 226
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
33-240 |
5.43e-13 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 67.59 E-value: 5.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 33 NVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMG---VDITKT---PPDKvARMGLVrsFQISAVFPHLS 106
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlFDAEKGiclPPEK-RRIGYV--FQDARLFPHYK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVALQRPNNlsTQFWRPISALDrlnerAEQLLasvglskerDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPM 186
Cdd:PRK11144 93 VRGNLRYGMAKSMV--AQFDKIVALLG-----IEPLL---------DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 187 AGMG----QEDVGVVSSIIREVarERAVLMVEHNLSVVANICQHVTVLQRGEILAEGD 240
Cdd:PRK11144 157 ASLDlprkRELLPYLERLAREI--NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
30-251 |
6.94e-13 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 66.36 E-value: 6.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVAR-MGLVrsFQISAVFpHLSVL 108
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRqVGVV--LQENVLF-NRSIR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 109 DNVRVAlqrpnnlstqfwRPISALDRLNERAEQLLASVGLSKER---DHI----AADLSYGRKRVLEIATTLALDPKVLL 181
Cdd:cd03252 94 DNIALA------------DPGMSMERVIEAAKLAGAHDFISELPegyDTIvgeqGAGLSGGQRQRIAIARALIHNPRILI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 182 LDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGdyatvSQDERVR 251
Cdd:cd03252 162 FDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQG-----SHDELLA 225
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
13-239 |
7.74e-13 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 67.45 E-value: 7.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 13 RVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTtvfnlltKFLQPTSgtitLMGVDITKTPPDKVARMGL 92
Cdd:NF000106 11 RNAVEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**-------RGALPAH----V*GPDAGRRPWRF*TWCAN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 93 VRSFQiSAVFPHLSVLDNVRVALQRPNNLsTQFWRPISaLDRLNERA--EQLLASVGLSKERDHIAADLSYGRKRVLEIA 170
Cdd:NF000106 80 RRALR-RTIG*HRPVR*GRRESFSGRENL-YMIGR*LD-LSRKDARAraDELLERFSLTEAAGRAAAKYSGGMRRRLDLA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 171 TTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERA-VLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:NF000106 157 ASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGAtVLLTTQYMEEAEQLAHELTVIDRGRVIADG 226
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
3-217 |
1.87e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 66.76 E-value: 1.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 3 VSAIETQEKPRVVLSARGLRRDFGGFTavknvdLDVHDASVHA-----LIGPNGAGKTTVFNLLTKFLQPTSGTITLmGV 77
Cdd:PRK13409 328 ERPPRDESERETLVEYPDLTKKLGDFS------LEVEGGEIYEgevigIVGPNGIGKTTFAKLLAGVLKPDEGEVDP-EL 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 78 DITKTPpdkvarmglvrsfQ-ISAVFPhLSVLDNVRvalQRPNNLSTQFWRPisaldrlneraeQLLASVGLSKERDHIA 156
Cdd:PRK13409 401 KISYKP-------------QyIKPDYD-GTVEDLLR---SITDDLGSSYYKS------------EIIKPLQLERLLDKNV 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 157 ADLSYG-RKRVLeIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNL 217
Cdd:PRK13409 452 KDLSGGeLQRVA-IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEReaTALVVDHDI 514
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
27-258 |
2.03e-12 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 66.23 E-value: 2.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 27 GFtavKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLV---RSFQISAVFP 103
Cdd:PRK15439 278 GF---RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylpEDRQSSGLYL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 HLSVLDNVrVALQRpNNLStqFWrpisaLDRLNERA--EQLLASVGLS-KERDHIAADLSYGRKRVLEIATTLALDPKVL 180
Cdd:PRK15439 355 DAPLAWNV-CALTH-NRRG--FW-----IKPARENAvlERYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 181 LLDEPMAGMgqeDVGVVSSI---IREVARER-AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRVAYMG 256
Cdd:PRK15439 426 IVDEPTRGV---DVSARNDIyqlIRSIAAQNvAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGE 502
|
..
gi 517259721 257 TE 258
Cdd:PRK15439 503 HQ 504
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
30-239 |
6.85e-12 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 63.28 E-value: 6.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-ARMGLVRsfQISAVFPHlSVL 108
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLrSRISIIP--QDPVLFSG-TIR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 109 DNVrvalqRPNNLST--QFWRpisALDR--LNERAEQLlaSVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDE 184
Cdd:cd03244 96 SNL-----DPFGEYSdeELWQ---ALERvgLKEFVESL--PGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 185 PMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEG 239
Cdd:cd03244 166 ATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
43-253 |
9.53e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 64.42 E-value: 9.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 43 VHALIGPNGAGKTTVFNLLTKFLQPTSGtitlmgvDITKTPP-DKVarmglVRSFQISAVFPHLSVLDN--VRVAL--QR 117
Cdd:COG1245 101 VTGILGPNGIGKSTALKILSGELKPNLG-------DYDEEPSwDEV-----LKRFRGTELQDYFKKLANgeIKVAHkpQY 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 118 PNNLSTQF-WRPISALDRLNER--AEQLLASVGLSKERDHIAADLSYGR-KRVLeIATTLALDPKVLLLDEPMAGMgqeD 193
Cdd:COG1245 169 VDLIPKVFkGTVRELLEKVDERgkLDELAEKLGLENILDRDISELSGGElQRVA-IAAALLRDADFYFFDEPSSYL---D 244
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 194 VG---VVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQrGEilaEGDYATVSQDERVRVA 253
Cdd:COG1245 245 IYqrlNVARLIRELAEEgKYVLVVEHDLAILDYLADYVHILY-GE---PGVYGVVSKPKSVRVG 304
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
45-248 |
1.01e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 63.23 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 45 ALIGPNGAGKTTVFNLLTKFLQPTSGTITlmgvditktppdkvarmglvrsFQISAVFPH--LSVLDNVRVALQRPNNls 122
Cdd:PRK13648 39 SIVGHNGSGKSTIAKLMIGIEKVKSGEIF----------------------YNNQAITDDnfEKLRKHIGIVFQNPDN-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 123 tQFWRPISALD-------------RLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGM 189
Cdd:PRK13648 95 -QFVGSIVKYDvafglenhavpydEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 190 GQEDVGVVSSIIREVARERAVLMVE--HNLSVVANiCQHVTVLQRGEILAEGDYATVSQDE 248
Cdd:PRK13648 174 DPDARQNLLDLVRKVKSEHNITIISitHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHA 233
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
5-188 |
1.52e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 63.99 E-value: 1.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 5 AIEtqekprvvlsARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMG--VDitkt 82
Cdd:NF033858 266 AIE----------ARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGqpVD---- 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 83 PPDKVARMglvR------SFqisAVFPHLSVLDNVrvalqrpnNLSTQFWRpISAlDRLNERAEQLLASVGLSKERDHIA 156
Cdd:NF033858 332 AGDIATRR---RvgymsqAF---SLYGELTVRQNL--------ELHARLFH-LPA-AEIAARVAEMLERFDLADVADALP 395
|
170 180 190
....*....|....*....|....*....|...
gi 517259721 157 ADLSYG-RKRvLEIATTLALDPKVLLLDEPMAG 188
Cdd:NF033858 396 DSLPLGiRQR-LSLAVAVIHKPELLILDEPTSG 427
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
21-244 |
1.69e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 63.57 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 21 LRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGK-TTVFNLLTkfLQPTSGTITLMGvditkTPPDKVAR--MGLVRSfQ 97
Cdd:PRK15134 292 LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKsTTGLALLR--LINSQGEIWFDG-----QPLHNLNRrqLLPVRH-R 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 98 ISAVF--------PHLSVLDNVRVALQ--RPNnlstqfwrpISALDRlNERAEQLLASVGLSKE-RDHIAADLSYGRKRV 166
Cdd:PRK15134 364 IQVVFqdpnsslnPRLNVLQIIEEGLRvhQPT---------LSAAQR-EQQVIAVMEEVGLDPEtRHRYPAEFSGGQRQR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 167 LEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:PRK15134 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHqlAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
48-216 |
1.85e-11 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 62.04 E-value: 1.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 48 GPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVaRMGLVRSFQISAVFPHlSVLDNV----RVALQRPnnlst 123
Cdd:PRK10247 40 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY-RQQVSYCAQTPTLFGD-TVYDNLifpwQIRNQQP----- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 124 QFWRPISALDRLNERAEQLLASVglskerdhiaADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIRE 203
Cdd:PRK10247 113 DPAIFLDDLERFALPDTILTKNI----------AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182
|
170
....*....|....*
gi 517259721 204 VARER--AVLMVEHN 216
Cdd:PRK10247 183 YVREQniAVLWVTHD 197
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
43-244 |
2.23e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 62.26 E-value: 2.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 43 VHaLIGPNGAGKTTvfnLLTKF--LQPTSGTITLMGVDITKTPPDKVARMGLVRSFQISAVFphlsvldNVRV----ALQ 116
Cdd:PRK03695 25 LH-LVGPNGAGKST---LLARMagLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPF-------AMPVfqylTLH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 117 RPNNLSTQFWRpisalDRLNERAEQLlasvGLSKERDHIAADLSYG---RKR----VLEIATTLALDPKVLLLDEPMAGM 189
Cdd:PRK03695 94 QPDKTRTEAVA-----SALNEVAEAL----GLDDKLGRSVNQLSGGewqRVRlaavVLQVWPDINPAGQLLLLDEPMNSL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 190 GQEDVGVVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:PRK03695 165 DVAQQAALDRLLSELCQQgIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
30-243 |
3.03e-11 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 63.11 E-value: 3.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDItktppdkvarmglvRSFQISAVFPHLSV-- 107
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL--------------RDYTLASLRNQVALvs 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 108 ----LDNVRVAlqrpNNLSTQFWRPISALDRlnERAEQLLASVGLSKERDH-----I---AADLSYGRKRVLEIATTLAL 175
Cdd:PRK11176 424 qnvhLFNDTIA----NNIAYARTEQYSREQI--EEAARMAYAMDFINKMDNgldtvIgenGVLLSGGQRQRIAIARALLR 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259721 176 DPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYAT 243
Cdd:PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAE 564
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
32-242 |
3.13e-11 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 62.81 E-value: 3.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 32 KNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITkTPPDKVARMGlVRSFQISAVFPHLSVLDNv 111
Cdd:PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS-SLSHSVLRQG-VAMVQQDPVVLADTFLAN- 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 112 rVALQRpnNLS-TQFWRPISALdRLNERAEQLlaSVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMg 190
Cdd:PRK10790 435 -VTLGR--DISeEQVWQALETV-QLAELARSL--PDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI- 507
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 191 qeDVGVVSSIIREVA--RERAVLMV-EHNLSVVANiCQHVTVLQRGEILAEGDYA 242
Cdd:PRK10790 508 --DSGTEQAIQQALAavREHTTLVViAHRLSTIVE-ADTILVLHRGQAVEQGTHQ 559
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
43-253 |
8.26e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 61.75 E-value: 8.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 43 VHALIGPNGAGKTTVFNLLTKFLQPTSGtitlmgvDITKTP-PDKVarmglVRSFQISAVFPHLSVLDN--VRVAL--QR 117
Cdd:PRK13409 101 VTGILGPNGIGKTTAVKILSGELIPNLG-------DYEEEPsWDEV-----LKRFRGTELQNYFKKLYNgeIKVVHkpQY 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 118 PNNLSTQFWRPIS-ALDRLNER--AEQLLASVGLSKERDHIAADLSYGR-KRVLeIATTLALDPKVLLLDEPMAGMgqeD 193
Cdd:PRK13409 169 VDLIPKVFKGKVReLLKKVDERgkLDEVVERLGLENILDRDISELSGGElQRVA-IAAALLRDADFYFFDEPTSYL---D 244
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 194 VG---VVSSIIREVARERAVLMVEHNLSVVANICQHVTVLQrGEilaEGDYATVSQDERVRVA 253
Cdd:PRK13409 245 IRqrlNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAY-GE---PGAYGVVSKPKGVRVG 303
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
30-247 |
9.75e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 61.41 E-value: 9.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVarMGLVRSFQI------SAVFP 103
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKL--QALRRDIQFifqdpyASLDP 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 HLSVLDNVRVALQRPNNLSTqfwrpisalDRLNERAEQLLASVGLSKERD-HIAADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:PRK10261 417 RQTVGDSIMEPLRVHGLLPG---------KAAAARVAWLLERVGLLPEHAwRYPHEFSGGQRQRICIARALALNPKVIIA 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 183 DEPMAGMgqeDVGVVSSIIR---EVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD 247
Cdd:PRK10261 488 DEAVSAL---DVSIRGQIINlllDLQRDFgiAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN 554
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
30-244 |
1.26e-10 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 60.19 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDkvarmglVRSFQISAVF--PHLSV 107
Cdd:PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS-------YRSQRIRMIFqdPSTSL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 108 LDNVRVA--LQRPNNLSTQfwrpISALDRlNERAEQLLASVGLskERDHIA---ADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:PRK15112 101 NPRQRISqiLDFPLRLNTD----LEPEQR-EKQIIETLRQVGL--LPDHASyypHMLAPGQKQRLGLARALILRPKVIIA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 183 DEPMAGMgqeDVGVVSSIIR---EVARERAV--LMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:PRK15112 174 DEALASL---DMSMRSQLINlmlELQEKQGIsyIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
46-236 |
1.42e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 61.15 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 46 LIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtppdkvarMGLVRSFQISAVFPHLSVL--DNVRVALQR-PNNLS 122
Cdd:PLN03232 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK--------FGLTDLRRVLSIIPQSPVLfsGTVRFNIDPfSEHND 1338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 123 TQFWRpisALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIR 202
Cdd:PLN03232 1339 ADLWE---ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
170 180 190
....*....|....*....|....*....|....
gi 517259721 203 EVARERAVLMVEHNLSVVANiCQHVTVLQRGEIL 236
Cdd:PLN03232 1416 EEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVL 1448
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
25-235 |
2.27e-10 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 58.73 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 25 FGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVA----RMGLVrsFQISA 100
Cdd:PRK10908 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPflrrQIGMI--FQDHH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 101 VFPHLSVLDNVRVALQRPNNLSTQFWRPISAldrlneraeqLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVL 180
Cdd:PRK10908 90 LLMDRTVYDNVAIPLIIAGASGDDIRRRVSA----------ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 181 LLDEPMAGMGQEDVGVVSSIIREVAR-ERAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRvGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
31-235 |
3.00e-10 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 57.61 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVArmglvrsfqisavfphlsvlDN 110
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELG--------------------DH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 111 VRVALQRpnnlstqfwrpisaldrlneraEQLLA-SVglskeRDHIaadLSYG-RKRVLeIATTLALDPKVLLLDEPMAG 188
Cdd:cd03246 78 VGYLPQD----------------------DELFSgSI-----AENI---LSGGqRQRLG-LARALYGNPRILVLDEPNSH 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517259721 189 MGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVAnICQHVTVLQRGEI 235
Cdd:cd03246 127 LDVEGERALNQAIAALkAAGATRIVIAHRPETLA-SADRILVLEDGRV 173
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
45-189 |
3.22e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 59.89 E-value: 3.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 45 ALIGPNGAGKTTVFNLLTKFLQPTS--GTITLMGVDITKtppDKVARMGLVRsfQISAVFPHLSVLDN-VRVALQR-PNN 120
Cdd:PLN03211 98 AVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTK---QILKRTGFVT--QDDILYPHLTVRETlVFCSLLRlPKS 172
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 121 LSTQfwRPISAldrlnerAEQLLASVGLSKERDHIAAD-----LSYGRKRVLEIATTLALDPKVLLLDEPMAGM 189
Cdd:PLN03211 173 LTKQ--EKILV-------AESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGL 237
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
31-235 |
3.58e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 58.97 E-value: 3.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDIT-KTPPDKVARMGLVrsFQ-ISAVFPHLSVL 108
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTeENVWDIRHKIGMV--FQnPDNQFVGATVE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 109 DNVRVALQRPNnlstqfwrpiSALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAG 188
Cdd:PRK13650 101 DDVAFGLENKG----------IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517259721 189 MGQEDVGVVSSIIREVaRER---AVLMVEHNLSVVAnICQHVTVLQRGEI 235
Cdd:PRK13650 171 LDPEGRLELIKTIKGI-RDDyqmTVISITHDLDEVA-LSDRVLVMKNGQV 218
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
4-210 |
4.01e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 58.05 E-value: 4.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 4 SAIETQEKPRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFL--QPTSGTITLMGVDItk 81
Cdd:COG2401 19 SVLDLSERVAIVLEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQF-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 82 tPPDKvarmglvrsfqisavfphlSVLDNVrvalqrpnnlstqfWRPISALDrlnerAEQLLASVGLSkerDHIA----- 156
Cdd:COG2401 97 -GREA-------------------SLIDAI--------------GRKGDFKD-----AVELLNAVGLS---DAVLwlrrf 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517259721 157 ADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAV 210
Cdd:COG2401 135 KELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARNLQKLARRAGI 188
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
21-229 |
9.13e-10 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 57.42 E-value: 9.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 21 LRRDFGGFTAvkNVDL-DVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPdkvarmglvrsfQIS 99
Cdd:cd03237 6 MKKTLGEFTL--EVEGgSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQ------------YIK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 100 AVFPhlsvlDNVRVALQR--PNNLSTQFWRpisaldrlNERAEQLlasvGLSKERDHIAADLSYGRKRVLEIATTLALDP 177
Cdd:cd03237 72 ADYE-----GTVRDLLSSitKDFYTHPYFK--------TEIAKPL----QIEQILDREVPELSGGELQRVAIAACLSKDA 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517259721 178 KVLLLDEPMAGMGQEDVGVVSSIIREVA--RERAVLMVEHNLSVVANICQHVTV 229
Cdd:cd03237 135 DIYLLDEPSAYLDVEQRLMASKVIRRFAenNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
12-185 |
1.02e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.41 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 12 PR---VVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLmGvditktppDKVa 88
Cdd:TIGR03719 316 PRlgdKVIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-G--------ETV- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 89 rmglvrsfqisavfpHLSVLDNVRVALQRPNNLstqfWRPIS-ALD--RLNERAEQLLASVGL----SKERDHIAADLSY 161
Cdd:TIGR03719 386 ---------------KLAYVDQSRDALDPNKTV----WEEISgGLDiiKLGKREIPSRAYVGRfnfkGSDQQKKVGQLSG 446
|
170 180
....*....|....*....|....
gi 517259721 162 GRKRVLEIATTLALDPKVLLLDEP 185
Cdd:TIGR03719 447 GERNRVHLAKTLKSGGNVLLLDEP 470
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
13-239 |
1.32e-09 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 56.02 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 13 RVVLSARGLR------RDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLT--KFLQPTSGTITLMGVDITKTPP 84
Cdd:cd03213 1 GVTLSFRNLTvtvkssPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAgrRTGLGVSGEVLINGRPLDKRSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 85 DKvaRMGLVRsfQISAVFPHLSVldnvrvalqrpnnlstqfwrpisaldrlnerAEQLLASVGLSKerdhiaadLSYGRK 164
Cdd:cd03213 81 RK--IIGYVP--QDDILHPTLTV-------------------------------RETLMFAAKLRG--------LSGGER 117
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 165 RVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLS-VVANICQHVTVLQRGEILAEG 239
Cdd:cd03213 118 KRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTgRTIICSIHQPSsEIFELFDKLLLLSQGRVIYFG 194
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
15-188 |
1.34e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 58.21 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLT--KFLQptSGTITLMGVDITKT-------Ppd 85
Cdd:NF033858 1 VARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAgaRKIQ--QGRVEVLGGDMADArhrravcP-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 86 KVARM--GLVRSfqisaVFPHLSVLDNVrvalqrpnnlstQFWRPISALDRL--NERAEQLLASVGLSKERDHIAADLSY 161
Cdd:NF033858 77 RIAYMpqGLGKN-----LYPTLSVFENL------------DFFGRLFGQDAAerRRRIDELLRATGLAPFADRPAGKLSG 139
|
170 180
....*....|....*....|....*..
gi 517259721 162 GRKRVLEIATTLALDPKVLLLDEPMAG 188
Cdd:NF033858 140 GMKQKLGLCCALIHDPDLLILDEPTTG 166
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
16-238 |
1.50e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 58.00 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDfggftavknVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDIT-KTPPDKVaRMGLV- 93
Cdd:PRK11288 263 LKGPGLREP---------ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDiRSPRDAI-RAGIMl 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 94 ----RSFQisAVFPHLSVLDNVRVAlQRPNNLSTQFWrpisaldrLNERAEQLLAsvglskeRDHIAA------------ 157
Cdd:PRK11288 333 cpedRKAE--GIIPVHSVADNINIS-ARRHHLRAGCL--------INNRWEAENA-------DRFIRSlniktpsreqli 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 158 -DLSYGRKRVLEIATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVA-RERAVLMVEHNLSVVANICQHVTVLQR 232
Cdd:PRK11288 395 mNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI---DVGAKHEIynvIYELAaQGVAVLFVSSDLPEVLGVADRIVVMRE 471
|
....*.
gi 517259721 233 GEILAE 238
Cdd:PRK11288 472 GRIAGE 477
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
45-211 |
2.94e-09 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 55.33 E-value: 2.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 45 ALIGPNGAGKTTVFNLLTKflQPTSGTIT-LMGVDITKTPPDKVARMGLVRSFQIsavfpHLSVLdNVRVALQrpnnlst 123
Cdd:cd03232 37 ALMGESGAGKTTLLDVLAG--RKTAGVITgEILINGRPLDKNFQRSTGYVEQQDV-----HSPNL-TVREALR------- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 124 qfwrpISALDRlneraeqllasvGLSKERdhiaadlsygRKRvLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIRE 203
Cdd:cd03232 102 -----FSALLR------------GLSVEQ----------RKR-LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK 153
|
....*....
gi 517259721 204 VARE-RAVL 211
Cdd:cd03232 154 LADSgQAIL 162
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
26-230 |
3.37e-09 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 56.45 E-value: 3.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTtvfnLLTKFL---QPTSGTIT-----LMGVDITKTPPDKvaRMGLVRSfQ 97
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKS----LIAKAIcgiTKDNWHVTadrfrWNGIDLLKLSPRE--RRKIIGR-E 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 98 ISAVFPH-LSVLD-NVRVALQR----PNN-LSTQFWRpisaldRLN---ERAEQLLASVGLSKERDHIAA---DLSYGRK 164
Cdd:COG4170 91 IAMIFQEpSSCLDpSAKIGDQLieaiPSWtFKGKWWQ------RFKwrkKRAIELLHRVGIKDHKDIMNSyphELTEGEC 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 165 RVLEIATTLALDPKVLLLDEPMAGMgqeDVGVVSSIIREVAR-----ERAVLMVEHNLSVVANICQHVTVL 230
Cdd:COG4170 165 QKVMIAMAIANQPRLLIADEPTNAM---ESTTQAQIFRLLARlnqlqGTSILLISHDLESISQWADTITVL 232
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
30-247 |
4.80e-09 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 55.87 E-value: 4.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvarMGLVRS-----FQ--ISAVF 102
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDE---WRAVRSdiqmiFQdpLASLN 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 PHLSVLDNVRVALQRpnnlstqfWRPISALDRLNERAEQLLASVGLSKER-DHIAADLSYGRKRVLEIATTLALDPKVLL 181
Cdd:PRK15079 113 PRMTIGEIIAEPLRT--------YHPKLSRQEVKDRVKAMMLKVGLLPNLiNRYPHEFSGGQCQRIGIARALILEPKLII 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 182 LDEPMAGMgqeDVGV---VSSIIREVARER--AVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD 247
Cdd:PRK15079 185 CDEPVSAL---DVSIqaqVVNLLQQLQREMglSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
29-246 |
1.31e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 55.10 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 29 TAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKV-ARMGLVRsfQISAVFPHlSV 107
Cdd:PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWrSRLAVVS--QTPFLFSD-TV 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 108 LDNvrVALQRPNNLSTQfwrpISALDRLNERAEQLL-------ASVGlskERdhiAADLSYGRKRVLEIATTLALDPKVL 180
Cdd:PRK10789 406 ANN--IALGRPDATQQE----IEHVARLASVHDDILrlpqgydTEVG---ER---GVMLSGGQKQRISIARALLLNAEIL 473
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 181 LLDEPMAGM-GQEDVGVVSSiIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEILAEGDYATVSQ 246
Cdd:PRK10789 474 ILDDALSAVdGRTEHQILHN-LRQWGEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQ 538
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
46-236 |
1.56e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 55.13 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 46 LIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtppdkvarMGLVRSFQISAVFPHLSVL--DNVRVALQRPNNLS- 122
Cdd:PLN03130 1270 IVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK--------FGLMDLRKVLGIIPQAPVLfsGTVRFNLDPFNEHNd 1341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 123 TQFWRpisALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMgqeDVG---VVSS 199
Cdd:PLN03130 1342 ADLWE---SLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAV---DVRtdaLIQK 1415
|
170 180 190
....*....|....*....|....*....|....*..
gi 517259721 200 IIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEIL 236
Cdd:PLN03130 1416 TIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVV 1451
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
25-220 |
1.94e-08 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 53.58 E-value: 1.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 25 FGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTItlmgvditKTPPDkvARMGLV-RSFQISAVFP 103
Cdd:PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--------KRNGK--LRIGYVpQKLYLDTTLP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 hLSVldnVRVALQRPNNLSTQFwrpISALDRLNerAEQLLasvglskerDHIAADLSYGR-KRVLeIATTLALDPKVLLL 182
Cdd:PRK09544 84 -LTV---NRFLRLRPGTKKEDI---LPALKRVQ--AGHLI---------DAPMQKLSGGEtQRVL-LARALLNRPQLLVL 144
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 517259721 183 DEPMAGMGQEDVGVVSSIIREVARER--AVLMVEHNLSVV 220
Cdd:PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELdcAVLMVSHDLHLV 184
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
40-252 |
2.02e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 53.52 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 40 DASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITlmgvditkTPPDkvaRMGLVRSFQISAVFPHLSVL--DNVRVAlQR 117
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD--------DPPD---WDEILDEFRGSELQNYFTKLleGDVKVI-VK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 118 PNN---LSTQFWRPISA-LDRLNERA--EQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMgq 191
Cdd:cd03236 93 PQYvdlIPKAVKGKVGElLKKKDERGklDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL-- 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 192 eDVG---VVSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQrGEilaEGDYATVSQDERVRV 252
Cdd:cd03236 171 -DIKqrlNAARLIRELAEDdNYVLVVEHDLAVLDYLSDYIHCLY-GE---PGAYGVVTLPKSVRE 230
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
16-75 |
2.37e-08 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 51.68 E-value: 2.37e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLM 75
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
12-74 |
2.39e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 54.35 E-value: 2.39e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 12 PR---VVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITL 74
Cdd:PRK11819 318 PRlgdKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
36-201 |
2.56e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.93 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 36 LDVHDASVHALI--GPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDK-VARMGlvrsfQISAVFPHLSVLDNV- 111
Cdd:PRK13543 30 LDFHVDAGEALLvqGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRfMAYLG-----HLPGLKADLSTLENLh 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 112 -------RVALQRPNNlstqfwrpisaldrlneraeqLLASVGLSKERDHIAADLSYGRKRVLEIAtTLALDPKVL-LLD 183
Cdd:PRK13543 105 flcglhgRRAKQMPGS---------------------ALAIVGLAGYEDTLVRQLSAGQKKRLALA-RLWLSPAPLwLLD 162
|
170
....*....|....*...
gi 517259721 184 EPMAGMGQEDVGVVSSII 201
Cdd:PRK13543 163 EPYANLDLEGITLVNRMI 180
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
46-189 |
6.97e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 52.71 E-value: 6.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 46 LIGPNGAGKTTVFNLLT-KFLQPTSGTITLMGV---------DITKtppdkvaRMGLVRSfQIsavfpHLS--VLDNVRV 113
Cdd:PRK10938 291 IVGPNGAGKSTLLSLITgDHPQGYSNDLTLFGRrrgsgetiwDIKK-------HIGYVSS-SL-----HLDyrVSTSVRN 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 114 ALqrpnnLSTQF-----WRPISalDRLNERAEQLLASVGLSKE-RDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMA 187
Cdd:PRK10938 358 VI-----LSGFFdsigiYQAVS--DRQQKLAQQWLDILGIDKRtADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQ 430
|
..
gi 517259721 188 GM 189
Cdd:PRK10938 431 GL 432
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
48-185 |
1.28e-07 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 50.57 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 48 GPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPD---KVARMGlvrsfQISAVFPHLSVLDNVRVALQRPNNLSTq 124
Cdd:PRK13538 34 GPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEyhqDLLYLG-----HQPGIKTELTALENLRFYQRLHGPGDD- 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259721 125 fwrpisaldrlnERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEP 185
Cdd:PRK13538 108 ------------EALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
31-215 |
5.26e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 48.79 E-value: 5.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHD------ASVHA-------LIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtppDKVA-RMGLVRSF 96
Cdd:PRK13540 4 VIELDFDYHDqpllqqISFHLpaggllhLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK---DLCTyQKQLCFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 97 QISAVFPHLSVLDNVRVALQRPNNlstqfwrpisaldrlNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALD 176
Cdd:PRK13540 81 HRSGINPYLTLRENCLYDIHFSPG---------------AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 517259721 177 PKVLLLDEPMAGMGQEDVGVVSSIIRE-VARERAVLMVEH 215
Cdd:PRK13540 146 AKLWLLDEPLVALDELSLLTIITKIQEhRAKGGAVLLTSH 185
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
31-235 |
6.02e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 50.33 E-value: 6.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDItktppdkvARMGL--VRsFQISaVFPHLSVL 108
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI--------AKIGLhdLR-FKIT-IIPQDPVL 1371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 109 --DNVRVALQRPNNLSTQ-FWRPISaLDRLNERAEQLLAsvGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEP 185
Cdd:TIGR00957 1372 fsGSLRMNLDPFSQYSDEeVWWALE-LAHLKTFVSALPD--KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEA 1448
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517259721 186 MAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANICQhVTVLQRGEI 235
Cdd:TIGR00957 1449 TAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR-VIVLDKGEV 1497
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
29-233 |
6.94e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 49.70 E-value: 6.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 29 TAVKNVDLDVHDASVHALIGPNGAGKT-TVFNLLTKFLQP----TSGTITLMGVDITKTPPdkvARMGLVRSFQISAVFp 103
Cdd:PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGESLLHASE---QTLRGVRGNKIAMIF- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 hlsvlDNVRVALQRPNNLSTQFWRPIS---ALDRLNERAEQL--LASVGLSKERDHIAA---DLSYG-RKRVLeIATTLA 174
Cdd:PRK15134 99 -----QEPMVSLNPLHTLEKQLYEVLSlhrGMRREAARGEILncLDRVGIRQAAKRLTDyphQLSGGeRQRVM-IAMALL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 175 LDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARE--RAVLMVEHNLSVVANICQHVTVLQRG 233
Cdd:PRK15134 173 TRPELLIADEPTTAL---DVSVQAQIlqlLRELQQElnMGLLFITHNLSIVRKLADRVAVMQNG 233
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
31-260 |
1.15e-06 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 48.54 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKT----TVFNLLTKFLQPTSGTITLMGVDITktPPDkvarmglVRSFQISavfphlS 106
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVA--PCA-------LRGRKIA------T 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVALQRPNNLSTQFWRPISALDRLNERAEQL--LASVGLSKER---DHIAADLSYGRKRVLEIATTLALDPKVLL 181
Cdd:PRK10418 84 IMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTaaLEAVGLENAArvlKLYPFEMSGGMLQRMMIALALLCEAPFII 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 182 LDEPMAgmgqeDVGVVS-----SIIREVARERA--VLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERVRVAY 254
Cdd:PRK10418 164 ADEPTT-----DLDVVAqarilDLLESIVQKRAlgMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
|
....*.
gi 517259721 255 MGTEEH 260
Cdd:PRK10418 239 SLVSAH 244
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
32-220 |
1.28e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 49.34 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 32 KNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLqpTSGTITlMGVDITKTPPdkvarmgLVRSFQISAVFP-----HLS 106
Cdd:TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV--TTGVIT-GGDRLVNGRP-------LDSSFQRSIGYVqqqdlHLP 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLdNVRVALQ------RPNNLS----TQFWRPISALDRLNERAEQL--LASVGLSKERdhiaadlsygRKRvLEIATTLA 174
Cdd:TIGR00956 850 TS-TVRESLRfsaylrQPKSVSksekMEYVEEVIKLLEMESYADAVvgVPGEGLNVEQ----------RKR-LTIGVELV 917
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517259721 175 LDPKVLL-LDEPMAGMGQEDVGVVSSIIREVARE-RAVLMVEHNLSVV 220
Cdd:TIGR00956 918 AKPKLLLfLDEPTSGLDSQTAWSICKLMRKLADHgQAILCTIHQPSAI 965
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
46-185 |
1.64e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 48.73 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 46 LIGPNGAGKTTVFNLLTKFLQPTSGTITLmgvditktppDKVARMGLVRSFQISavFPHLSVLDNVRVAlqrpnnlSTQF 125
Cdd:PRK15064 32 LIGANGCGKSTFMKILGGDLEPSAGNVSL----------DPNERLGKLRQDQFA--FEEFTVLDTVIMG-------HTEL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 126 WRPISALDRL-----------------------------NERAEQLLASVGLSKERdHIA--ADLSYGRK-RVLeIATTL 173
Cdd:PRK15064 93 WEVKQERDRIyalpemseedgmkvadlevkfaemdgytaEARAGELLLGVGIPEEQ-HYGlmSEVAPGWKlRVL-LAQAL 170
|
170
....*....|..
gi 517259721 174 ALDPKVLLLDEP 185
Cdd:PRK15064 171 FSNPDILLLDEP 182
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
9-72 |
1.65e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 48.73 E-value: 1.65e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 9 QEKP--RVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTI 72
Cdd:PRK15064 311 QDKKlhRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
16-185 |
3.29e-06 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 47.53 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 16 LSARGLRRDF-GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPdkvARMGLVR 94
Cdd:PRK11650 4 LKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---ADRDIAM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 95 SFQISAVFPHLSVLDNVRVALQrpnnlstqfwrpISALDR--LNERAEQLLASVGLSKERDHIAADLSYG-RKRVleiAT 171
Cdd:PRK11650 81 VFQNYALYPHMSVRENMAYGLK------------IRGMPKaeIEERVAEAARILELEPLLDRKPRELSGGqRQRV---AM 145
|
170
....*....|....*.
gi 517259721 172 TLAL--DPKVLLLDEP 185
Cdd:PRK11650 146 GRAIvrEPAVFLFDEP 161
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
31-247 |
3.38e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 47.69 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDI-TKTPPDKVA-----------RMGLVRSfqi 98
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvTRSPQDGLAngivyisedrkRDGLVLG--- 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 99 savfphLSVLDNVRV-ALQrpnnlstQFwrpISALDRLNERAEQLLAS--VGL----SKERDHIAADLSYGRKRVLEIAT 171
Cdd:PRK10762 345 ------MSVKENMSLtALR-------YF---SRAGGSLKHADEQQAVSdfIRLfnikTPSMEQAIGLLSGGNQQKVAIAR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 172 TLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQD 247
Cdd:PRK10762 409 GLMTRPKVLILDEPTRGV---DVGAKKEIyqlINQFKAEgLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQATQE 485
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
45-239 |
3.71e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 47.01 E-value: 3.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 45 ALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARmglvrsfQISAVFPHLsvlDNVRVALQRPNNLSTQ 124
Cdd:PRK13642 37 SIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR-------KIGMVFQNP---DNQFVGATVEDDVAFG 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 125 FWRPISALDRLNERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREV 204
Cdd:PRK13642 107 MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186
|
170 180 190
....*....|....*....|....*....|....*..
gi 517259721 205 ARER--AVLMVEHNLSVVANiCQHVTVLQRGEILAEG 239
Cdd:PRK13642 187 KEKYqlTVLSITHDLDEAAS-SDRILVMKAGEIIKEA 222
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
15-240 |
3.85e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 47.54 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 15 VLSARGLRRDF----GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKtppdkvarm 90
Cdd:PRK10261 12 VLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRR--------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 91 glvRSFQISAvfphLSVLDNVRVALQRPNNLSTQFWRPISALDRLNERAEQLLASV----GLSKERDHIAA--------- 157
Cdd:PRK10261 83 ---RSRQVIE----LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIrlhqGASREEAMVEAkrmldqvri 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 158 ------------DLSYG-RKRVLeIATTLALDPKVLLLDEPMAGMgqeDVGVVSSIIREVA-----RERAVLMVEHNLSV 219
Cdd:PRK10261 156 peaqtilsryphQLSGGmRQRVM-IAMALSCRPAVLIADEPTTAL---DVTIQAQILQLIKvlqkeMSMGVIFITHDMGV 231
|
250 260
....*....|....*....|.
gi 517259721 220 VANICQHVTVLQRGEILAEGD 240
Cdd:PRK10261 232 VAEIADRVLVMYQGEAVETGS 252
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
31-254 |
6.04e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 46.36 E-value: 6.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPT--------SGTITLMGVDITKTPPDKVARMGLVRSFQISAVF 102
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 PhLSVLDNVRVAlQRPNNlstqfwRPISALDRLN-ERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLA------- 174
Cdd:PRK13547 97 A-FSAREIVLLG-RYPHA------RRAGALTHRDgEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAqlwpphd 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 175 --LDPKVLLLDEPMAGMGQEDVGVVSSIIREVARE--RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQDERV 250
Cdd:PRK13547 169 aaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDwnLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHI 248
|
....
gi 517259721 251 RVAY 254
Cdd:PRK13547 249 ARCY 252
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
137-239 |
6.37e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 46.66 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 137 ERAEQLLASVGL---SKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMgqeDVGVVSSIIR---EVARER-- 208
Cdd:PRK11022 129 QRAIDLLNQVGIpdpASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL---DVTIQAQIIElllELQQKEnm 205
|
90 100 110
....*....|....*....|....*....|.
gi 517259721 209 AVLMVEHNLSVVANICQHVTVLQRGEILAEG 239
Cdd:PRK11022 206 ALVLITHDLALVAEAAHKIIVMYAGQVVETG 236
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-72 |
6.79e-06 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 46.87 E-value: 6.79e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 1 MAVSaiETQEKPRVVLSARGLRRDFGGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTI 72
Cdd:PRK11147 307 MQVE--EASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
31-238 |
8.17e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 46.36 E-value: 8.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKT-TVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLV---RSFQISAVFPHLS 106
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTeLVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAmvpEDRKRHGIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVA-LQRpnnlstqfwrpISALDRLNERAEQllASVGLSKERDHIA--------ADLSYGRKRVLEIATTLALDP 177
Cdd:TIGR02633 356 VGKNITLSvLKS-----------FCFKMRIDAAAEL--QIIGSAIQRLKVKtaspflpiGRLSGGNQQKAVLAKMLLTNP 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 178 KVLLLDEPMAGMgqeDVGVVSSI---IREVARER-AVLMVEHNLSVVANICQHVTVLQRGEILAE 238
Cdd:TIGR02633 423 RVLILDEPTRGV---DVGAKYEIyklINQLAQEGvAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
26-235 |
8.36e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 46.78 E-value: 8.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTitlmgvditktppdkVARMGLVRsfqiSAVFP-- 103
Cdd:PLN03073 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT---------------VFRSAKVR----MAVFSqh 580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 104 HLSVLDnvrvalqrpnnLSTQfwrPISALDR-----LNERAEQLLASVGLSkerDHIAAD----LSYGRKRVLEIATTLA 174
Cdd:PLN03073 581 HVDGLD-----------LSSN---PLLYMMRcfpgvPEQKLRAHLGSFGVT---GNLALQpmytLSGGQKSRVAFAKITF 643
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259721 175 LDPKVLLLDEPMAGMgqeDVGVVSSIIREVAR-ERAVLMVEHNLSVVANICQHVTVLQRGEI 235
Cdd:PLN03073 644 KKPHILLLDEPSNHL---DLDAVEALIQGLVLfQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
26-102 |
1.65e-05 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 45.73 E-value: 1.65e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 26 GGFtAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKvarmglVRSfQISAVF 102
Cdd:PRK10522 335 NGF-SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED------YRK-LFSAVF 403
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
27-185 |
2.68e-05 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 44.61 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 27 GFTAVKNVDLDVHDaSVHALIGPNGAGKTTVFNLLTKFLQPTSgTITLMGVDITKTPPDKvarmglVRSFQISAVFPhlS 106
Cdd:COG3593 10 NFRSIKDLSIELSD-DLTVLVGENNSGKSSILEALRLLLGPSS-SRKFDEEDFYLGDDPD------LPEIEIELTFG--S 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNV---RVALQRPNNLSTQFWRPISAL--------DRLNERAEQLLASVGLS-----KERDHIAADL----------- 159
Cdd:COG3593 80 LLSRLlrlLLKEEDKEELEEALEELNEELkealkalnELLSEYLKELLDGLDLElelslDELEDLLKSLslriedgkelp 159
|
170 180 190
....*....|....*....|....*....|....*..
gi 517259721 160 ----SYGRKRVLEIATTLAL-------DPKVLLLDEP 185
Cdd:COG3593 160 ldrlGSGFQRLILLALLSALaelkrapANPILLIEEP 196
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
31-85 |
3.23e-05 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 44.74 E-value: 3.23e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPD 85
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDRE 402
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
31-238 |
4.08e-05 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 44.53 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 31 VKNVDLDVHDASVHALIGPNGAGKT-TVFNLLTKFLQPTSGTITLMG--VDItKTPPDKVA-----------RMGLVrsf 96
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTeLVQCLFGAYPGRWEGEIFIDGkpVKI-RNPQQAIAqgiamvpedrkRDGIV--- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 97 qisavfPHLSVLDNVRVA-LQRpnnlstqfwrpISALDRLNERAEQLLASVGLSKERDHIA------ADLSYGRKRVLEI 169
Cdd:PRK13549 354 ------PVMGVGKNITLAaLDR-----------FTGGSRIDDAAELKTILESIQRLKVKTAspelaiARLSGGNQQKAVL 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259721 170 ATTLALDPKVLLLDEPMAGMgqeDVGVVSSI---IREVARER-AVLMVEHNLSVVANICQHVTVLQRGEILAE 238
Cdd:PRK13549 417 AKCLLLNPKILILDEPTRGI---DVGAKYEIyklINQLVQQGvAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
28-244 |
4.42e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 43.65 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 28 FTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITlmgvditktppdkvaRMGLVRSFQISA-VFPHLS 106
Cdd:PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD---------------RNGEVSVIAISAgLSGQLT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 107 VLDNVRVALqrpnnLSTQFWRP-ISALD----RLNERAEQLLASVglskerdhiaADLSYGRKRVLEIATTLALDPKVLL 181
Cdd:PRK13546 102 GIENIEFKM-----LCMGFKRKeIKAMTpkiiEFSELGEFIYQPV----------KKYSSGMRAKLGFSINITVNPDILV 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 182 LDEPMAGMGQEDVGVVSSIIREV-ARERAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATV 244
Cdd:PRK13546 167 IDEALSVGDQTFAQKCLDKIYEFkEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
23-73 |
2.61e-04 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 41.52 E-value: 2.61e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 517259721 23 RDFGGFtavKNVDLDVHDAS-VHALIGPNGAGKTTVFNLLTKFLQPTSGTIT 73
Cdd:COG3950 9 ENFRGF---EDLEIDFDNPPrLTVLVGENGSGKTTLLEAIALALSGLLSRLD 57
|
|
| BCA_ABC_TP_C |
pfam12399 |
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in ... |
234-258 |
2.72e-04 |
|
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter. This domain is essential for LPS transport, through critical interactions with Walker A and switch helix domains.
Pssm-ID: 463560 Cd Length: 25 Bit Score: 37.23 E-value: 2.72e-04
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
176-246 |
3.62e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 41.31 E-value: 3.62e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259721 176 DPKVLLLDEPMAGMgqeDVGV---VSSIIREVARE-RAVLMVEHNLSVVANICQHVTVLQRGEILAEGDYATVSQ 246
Cdd:NF040905 422 DPDVLILDEPTRGI---DVGAkyeIYTIINELAAEgKGVIVISSELPELLGMCDRIYVMNEGRITGELPREEASQ 493
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
40-201 |
4.29e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 40.24 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 40 DASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPPDKVARMGLVRSFQISavfphLSVLDNVRvalqrpn 119
Cdd:PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLE-----MTVFENLK------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 120 nlstqFWRPISaldrlnERAEQLLASVGLSKERDHI---AADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGV 196
Cdd:PRK13541 93 -----FWSEIY------NSAETLYAAIHYFKLHDLLdekCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDL 161
|
....*
gi 517259721 197 VSSII 201
Cdd:PRK13541 162 LNNLI 166
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
26-235 |
6.57e-04 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 40.22 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 26 GGFTAVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQpTSGTITLMGVDITKTPPDKVAR-MGLV--RSFQISAVF 102
Cdd:cd03289 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKaFGVIpqKVFIFSGTF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 103 phlsvldnvrvalqRPNNLSTQFWRpisaldrlNERAEQLLASVGLSK-------ERDHIAAD----LSYGRKRVLEIAT 171
Cdd:cd03289 94 --------------RKNLDPYGKWS--------DEEIWKVAEEVGLKSvieqfpgQLDFVLVDggcvLSHGHKQLMCLAR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259721 172 TLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEHNLSVVANiCQHVTVLQRGEI 235
Cdd:cd03289 152 SVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKV 214
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
46-185 |
1.97e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 39.16 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 46 LIGPNGAGKTTVFNLLTKFLQPTSGTITLMGvDITKT-----PPDKVArmGLVRSFQISAV---------FPHLSVLdnv 111
Cdd:PRK11147 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVArlqqdPPRNVE--GTVYDFVAEGIeeqaeylkrYHDISHL--- 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259721 112 rVALQRPNNLSTQFWRPISALD-----RLNERAEQLLASVGLSKerDHIAADLSYGRKRVLEIATTLALDPKVLLLDEP 185
Cdd:PRK11147 108 -VETDPSEKNLNELAKLQEQLDhhnlwQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
27-66 |
2.04e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 38.76 E-value: 2.04e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 517259721 27 GFTAVKNVDLDVHDasVHALIGPNGAGKTTVFNLLtKFLQ 66
Cdd:COG4637 9 NFKSLRDLELPLGP--LTVLIGANGSGKSNLLDAL-RFLS 45
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
121-219 |
2.18e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 38.07 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 121 LSTQFWRPISALDRLneraeQLLASVGLSKER-DHIAADLSYGRKRVLEIATTLALDPK--VLLLDEPMAGMGQEDVGVV 197
Cdd:cd03238 54 LPKFSRNKLIFIDQL-----QFLIDVGLGYLTlGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQL 128
|
90 100
....*....|....*....|...
gi 517259721 198 SSIIREVARE-RAVLMVEHNLSV 219
Cdd:cd03238 129 LEVIKGLIDLgNTVILIEHNLDV 151
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
23-62 |
2.44e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 38.07 E-value: 2.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 517259721 23 RDFGGFTAVKNVDLDvhdASVHALIGPNGAGKTTVFNLLT 62
Cdd:COG0419 8 ENFRSYRDTETIDFD---DGLNLIVGPNGAGKSTILEAIR 44
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
30-76 |
3.39e-03 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 38.33 E-value: 3.39e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 517259721 30 AVKNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMG 76
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
32-234 |
3.49e-03 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 37.45 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 32 KNVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGvditktppdkvaRMGLV--RSFQISAvfphlSVLD 109
Cdd:cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVsqEPWIQNG-----TIRE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 110 NVRVAL----QRpnnlstqFWRPISA--LDR-LNERAEQLLASVGlskERdhiAADLSYGRKRVLEIATTLALDPKVLLL 182
Cdd:cd03250 85 NILFGKpfdeER-------YEKVIKAcaLEPdLEILPDGDLTEIG---EK---GINLSGGQKQRISLARAVYSDADIYLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517259721 183 DEPMAGMgqeDVGVVSSIIREV-----ARERAVLMVEHNLSVVANiCQHVTVLQRGE 234
Cdd:cd03250 152 DDPLSAV---DAHVGRHIFENCilgllLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
37-83 |
4.04e-03 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 37.17 E-value: 4.04e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 517259721 37 DVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTP 83
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKP 67
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
33-247 |
5.17e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 38.18 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 33 NVDLDVHDASVHALIGPNGAGKTTVFNLLTKFLQPTSGTITLMGVDITKTPpdkvarmglvrsfQISAVFpHLSVLDNVR 112
Cdd:PLN03130 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVP-------------QVSWIF-NATVRDNIL 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 113 VALqrPNNlSTQFWRPI--SALDrlneRAEQLLASVGLSK--ERdhiAADLSYGRKRVLEIATTLALDPKVLLLDEPM-- 186
Cdd:PLN03130 701 FGS--PFD-PERYERAIdvTALQ----HDLDLLPGGDLTEigER---GVNISGGQKQRVSMARAVYSNSDVYIFDDPLsa 770
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259721 187 --AGMGQEdvgVVSSIIREVARERAVLMVE---HNLSVVANIcqhvTVLQRGEILAEGDYATVSQD 247
Cdd:PLN03130 771 ldAHVGRQ---VFDKCIKDELRGKTRVLVTnqlHFLSQVDRI----ILVHEGMIKEEGTYEELSNN 829
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
136-251 |
8.76e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 37.30 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259721 136 NERAEQLLASVGLSKERDHIAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGQEDVGVVSSIIREVARERAVLMVEH 215
Cdd:PRK10938 113 PARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVL 192
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 517259721 216 N-LSVVANICQHVTVL---------QRGEILAEGDYATVSQDERVR 251
Cdd:PRK10938 193 NrFDEIPDFVQFAGVLadctlaetgEREEILQQALVAQLAHSEQLE 238
|
|
| |
