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Conserved domains on  [gi|517293977|ref|WP_018482795|]
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YqaA family protein [Rhizobium ruizarguesonis]

Protein Classification

YqaA family protein( domain architecture ID 11441035)

YqaA family membrane protein similar to SNARE-associated Golgi membrane proteins such as Escherichia coli inner membrane protein YqaA, contains a VTT (VMP1, TMEM41, and TVP38) domain and is similar to fungal Golgi apparatus membrane protein TVP38 that is involved in vesicular trafficking and spindle migration;

Gene Ontology:  GO:0005886
PubMed:  17178117

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YqaA COG1238
Uncharacterized membrane protein YqaA, VTT domain [Function unknown];
1-165 1.78e-43

Uncharacterized membrane protein YqaA, VTT domain [Function unknown];


:

Pssm-ID: 440851  Cd Length: 162  Bit Score: 142.65  E-value: 1.78e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517293977   1 MLRRLYDWTmSLASRKSAEVWLAVIAFVESSVFLVPADVLFLPMALAKPERSYRYALIATVASVLGGIAGWALGYYAYET 80
Cdd:COG1238    1 MLRRLYDWT-RWALHRYGLWGLFLVSFLEATFLPIPSEVLLVPMLLAGPERAWLLALVATLGSVLGGLVGYAIGRFLFEA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517293977  81 VARPVLEFYGKLEAFEQMKAYVT-YETILLLLVtsGLAHLPPiKIVTILSGVIHVNLGLFIVSAIVARGARFIFLAWLLR 159
Cdd:COG1238   80 VGRPLLERYGKEEKLERAQAWFRrYGFWALLLA--GWTPIPG-DVLTIAAGVLRLPLWPFLLASLIGRGARFFLVALLLL 156


                 ....*.
gi 517293977 160 RYGEPI 165
Cdd:COG1238  157 WFGPPI 162
 
Name Accession Description Interval E-value
YqaA COG1238
Uncharacterized membrane protein YqaA, VTT domain [Function unknown];
1-165 1.78e-43

Uncharacterized membrane protein YqaA, VTT domain [Function unknown];


Pssm-ID: 440851  Cd Length: 162  Bit Score: 142.65  E-value: 1.78e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517293977   1 MLRRLYDWTmSLASRKSAEVWLAVIAFVESSVFLVPADVLFLPMALAKPERSYRYALIATVASVLGGIAGWALGYYAYET 80
Cdd:COG1238    1 MLRRLYDWT-RWALHRYGLWGLFLVSFLEATFLPIPSEVLLVPMLLAGPERAWLLALVATLGSVLGGLVGYAIGRFLFEA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517293977  81 VARPVLEFYGKLEAFEQMKAYVT-YETILLLLVtsGLAHLPPiKIVTILSGVIHVNLGLFIVSAIVARGARFIFLAWLLR 159
Cdd:COG1238   80 VGRPLLERYGKEEKLERAQAWFRrYGFWALLLA--GWTPIPG-DVLTIAAGVLRLPLWPFLLASLIGRGARFFLVALLLL 156


                 ....*.
gi 517293977 160 RYGEPI 165
Cdd:COG1238  157 WFGPPI 162
 
Name Accession Description Interval E-value
YqaA COG1238
Uncharacterized membrane protein YqaA, VTT domain [Function unknown];
1-165 1.78e-43

Uncharacterized membrane protein YqaA, VTT domain [Function unknown];


Pssm-ID: 440851  Cd Length: 162  Bit Score: 142.65  E-value: 1.78e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517293977   1 MLRRLYDWTmSLASRKSAEVWLAVIAFVESSVFLVPADVLFLPMALAKPERSYRYALIATVASVLGGIAGWALGYYAYET 80
Cdd:COG1238    1 MLRRLYDWT-RWALHRYGLWGLFLVSFLEATFLPIPSEVLLVPMLLAGPERAWLLALVATLGSVLGGLVGYAIGRFLFEA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517293977  81 VARPVLEFYGKLEAFEQMKAYVT-YETILLLLVtsGLAHLPPiKIVTILSGVIHVNLGLFIVSAIVARGARFIFLAWLLR 159
Cdd:COG1238   80 VGRPLLERYGKEEKLERAQAWFRrYGFWALLLA--GWTPIPG-DVLTIAAGVLRLPLWPFLLASLIGRGARFFLVALLLL 156


                 ....*.
gi 517293977 160 RYGEPI 165
Cdd:COG1238  157 WFGPPI 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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