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flagellar biosynthesis protein FlhA [Rhizobium ruizarguesonis]
Protein Classification
EscV/YscV/HrcV family type III secretion system export apparatus protein ( domain architecture ID 2534 )
EscV/YscV/HrcV family type III secretion system export apparatus protein similar to Salmonella enterica secretion system apparatus protein SsaV, a component of Salmonella pathogenicity island 2 (SPI-2) type III secretion system, required for secretion of some type III-secreted effectors including the SpvB toxin
List of domain hits
Name
Accession
Description
Interval
E-value
flhA super family
cl07980 flagellar type III secretion system protein FlhA;
1-695
0e+00
flagellar type III secretion system protein FlhA;
PRK12792 :Pssm-ID: 471784
Cd Length: 694
Bit Score: 1110.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 1 MA QPP ALPL PKV ap S L RD V GFA L GI IG I ICI LFLP I P PF LID M GLAFSIA F SVLILMVALWIQ K PL D FS S FPT I LLIAT M 80
Cdd:PRK12792 2 MA LSE ALPL ERR -- S R RD F GFA V GI VA I LAV LFLP V P AV LID I GLAFSIA L SVLILMVALWIQ R PL E FS A FPT V LLIAT L 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 81 T RLALNIATTR V ILS H G N EG HE AAG G VIAGF ASL VMSGDFVIGL I VF L ILIT I NF I VITKGATRIAEVGARFTLDAIPGK 160
Cdd:PRK12792 80 L RLALNIATTR L ILS N G Q EG VD AAG H VIAGF SQF VMSGDFVIGL V VF A ILIT V NF L VITKGATRIAEVGARFTLDAIPGK 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 161 QM S IDADLSAG I ID ER EAQRRR K ELEEES S FFG A MDGASKFVRGDA V A G LII TCI NIFGGIIIG YF RHGMP I G E AADVF V 240
Cdd:PRK12792 160 QM A IDADLSAG L ID DK EAQRRR R ELEEES A FFG S MDGASKFVRGDA I A S LII IAV NIFGGIIIG VT RHGMP L G Q AADVF T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 241 KLSVGDGLVSQ M PALIVSLAAGLLVS R GGT T GS TD QAV VN QL SG YPRALSV S A V LMF I LA LM PGLPF I PF VV LGG LL AF G 320
Cdd:PRK12792 240 KLSVGDGLVSQ I PALIVSLAAGLLVS K GGT R GS AE QAV LG QL GA YPRALSV A A L LMF V LA IV PGLPF L PF AL LGG VM AF V 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 321 A WF IPR QVE A ENMLRREQEEKKVVQSKELE KDSVK AV LRT S EIEL A LGK MVSTR L L GAH Q ELA F RV G KMR K KFA T QYGFV 400
Cdd:PRK12792 320 A YT IPR RRA A RAAAEAAKVKREEESAQAEA KDSVK EQ LRT A EIEL C LGK QLAAQ L Q GAH A ELA H RV A KMR R KFA K QYGFV 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 401 VPEIK V TD DIAIAE K S YQI R IHGT T VA SNL LR V GE V LVV T G A G R RP SI PG D E I REPAFGM P A VSILEN FA DDLK R E GF Q P 480
Cdd:PRK12792 400 VPEIK L TD SLSLPP K T YQI K IHGT V VA TQE LR P GE L LVV V G D G P RP DV PG E E V REPAFGM K A LWVPDA FA NEVR R D GF E P 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 481 I DN V SV V LTH M SEVIRNNLPQLLSYKD VKV L I DRLDPEYK K L A D E IC S S HM SYSGLQAVLKLLLAERVSIRNLHLILEAV 560
Cdd:PRK12792 480 V DN A SV L LTH L SEVIRNNLPQLLSYKD MRA L L DRLDPEYK R L I D D IC P S QI SYSGLQAVLKLLLAERVSIRNLHLILEAV 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 561 AE L APH V R KT EQI V EHVR I R M AQQ L CGDL A DNGVL R VLRLG SK WDLAFHQ A LKRDAKGEV I EFDIDPR SL E E F SEQ A TKV 640
Cdd:PRK12792 560 AE I APH A R RA EQI A EHVR M R I AQQ I CGDL S DNGVL K VLRLG NR WDLAFHQ S LKRDAKGEV V EFDIDPR LV E Q F GTE A SEA 639
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 517297585 641 IRE F MD R G LP F A LVT S PE T R S YVRMIIERLF A TLPVLSH V E L A K G I EIK I LG S IS 695
Cdd:PRK12792 640 IRE R MD Q G HQ F V LVT A PE A R P YVRMIIERLF P TLPVLSH L E I A R G V EIK S LG T IS 694
Name
Accession
Description
Interval
E-value
flhA
PRK12792 flagellar biosynthesis protein FlhA; Reviewed
1-695
0e+00
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 1110.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 1 MA QPP ALPL PKV ap S L RD V GFA L GI IG I ICI LFLP I P PF LID M GLAFSIA F SVLILMVALWIQ K PL D FS S FPT I LLIAT M 80
Cdd:PRK12792 2 MA LSE ALPL ERR -- S R RD F GFA V GI VA I LAV LFLP V P AV LID I GLAFSIA L SVLILMVALWIQ R PL E FS A FPT V LLIAT L 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 81 T RLALNIATTR V ILS H G N EG HE AAG G VIAGF ASL VMSGDFVIGL I VF L ILIT I NF I VITKGATRIAEVGARFTLDAIPGK 160
Cdd:PRK12792 80 L RLALNIATTR L ILS N G Q EG VD AAG H VIAGF SQF VMSGDFVIGL V VF A ILIT V NF L VITKGATRIAEVGARFTLDAIPGK 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 161 QM S IDADLSAG I ID ER EAQRRR K ELEEES S FFG A MDGASKFVRGDA V A G LII TCI NIFGGIIIG YF RHGMP I G E AADVF V 240
Cdd:PRK12792 160 QM A IDADLSAG L ID DK EAQRRR R ELEEES A FFG S MDGASKFVRGDA I A S LII IAV NIFGGIIIG VT RHGMP L G Q AADVF T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 241 KLSVGDGLVSQ M PALIVSLAAGLLVS R GGT T GS TD QAV VN QL SG YPRALSV S A V LMF I LA LM PGLPF I PF VV LGG LL AF G 320
Cdd:PRK12792 240 KLSVGDGLVSQ I PALIVSLAAGLLVS K GGT R GS AE QAV LG QL GA YPRALSV A A L LMF V LA IV PGLPF L PF AL LGG VM AF V 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 321 A WF IPR QVE A ENMLRREQEEKKVVQSKELE KDSVK AV LRT S EIEL A LGK MVSTR L L GAH Q ELA F RV G KMR K KFA T QYGFV 400
Cdd:PRK12792 320 A YT IPR RRA A RAAAEAAKVKREEESAQAEA KDSVK EQ LRT A EIEL C LGK QLAAQ L Q GAH A ELA H RV A KMR R KFA K QYGFV 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 401 VPEIK V TD DIAIAE K S YQI R IHGT T VA SNL LR V GE V LVV T G A G R RP SI PG D E I REPAFGM P A VSILEN FA DDLK R E GF Q P 480
Cdd:PRK12792 400 VPEIK L TD SLSLPP K T YQI K IHGT V VA TQE LR P GE L LVV V G D G P RP DV PG E E V REPAFGM K A LWVPDA FA NEVR R D GF E P 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 481 I DN V SV V LTH M SEVIRNNLPQLLSYKD VKV L I DRLDPEYK K L A D E IC S S HM SYSGLQAVLKLLLAERVSIRNLHLILEAV 560
Cdd:PRK12792 480 V DN A SV L LTH L SEVIRNNLPQLLSYKD MRA L L DRLDPEYK R L I D D IC P S QI SYSGLQAVLKLLLAERVSIRNLHLILEAV 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 561 AE L APH V R KT EQI V EHVR I R M AQQ L CGDL A DNGVL R VLRLG SK WDLAFHQ A LKRDAKGEV I EFDIDPR SL E E F SEQ A TKV 640
Cdd:PRK12792 560 AE I APH A R RA EQI A EHVR M R I AQQ I CGDL S DNGVL K VLRLG NR WDLAFHQ S LKRDAKGEV V EFDIDPR LV E Q F GTE A SEA 639
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 517297585 641 IRE F MD R G LP F A LVT S PE T R S YVRMIIERLF A TLPVLSH V E L A K G I EIK I LG S IS 695
Cdd:PRK12792 640 IRE R MD Q G HQ F V LVT A PE A R P YVRMIIERLF P TLPVLSH L E I A R G V EIK S LG T IS 694
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
33-695
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 885.93
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 33 F LP I PPFL I D MG LAF S IA F S V LIL M VAL W I QK PLDFS S FPT I LLI A T MT RL A LN I A T TR V IL SH G N EG HE AAG G VI AG F A 112
Cdd:COG1298 15 I LP L PPFL L D LL LAF N IA L S L LIL L VAL Y I KR PLDFS V FPT L LLI T T LF RL S LN V A S TR L IL LE G H EG TD AAG K VI EA F G 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 113 SL V MS G DF V I GL I VFLIL IT INF I VITKGA T RIAEV G ARFTLDA I PGKQM S IDADL S AG I IDE R EA Q RRR K E LEE E SS F F 192
Cdd:COG1298 95 EF V VG G NY V V GL V VFLIL VI INF V VITKGA G RIAEV A ARFTLDA M PGKQM A IDADL N AG L IDE E EA R RRR E E IQR E AD F Y 174
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 193 GAMDGASKFVRGDA V AG LI IT C INI F GG I IIG YFR HGM PI GEAA DVFVK L SV GDGLVSQ M PAL IV S L AAG LL V S R G G TT G 272
Cdd:COG1298 175 GAMDGASKFVRGDA I AG IL IT L INI I GG L IIG VLQ HGM SF GEAA QTYTL L TI GDGLVSQ I PAL LI S T AAG II V T R A G SE G 254
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 273 STDQAVVN QL SGY P R AL SVS A VLMFI L A L M PG L P FI PF VV L GG LL AFG A WFIPRQVEA E n MLRREQEEKKVVQSK E LEKD 352
Cdd:COG1298 255 DLGEQLSG QL FAN P K AL YIA A GVLGL L G L I PG M P HL PF LL L AA LL GGL A YRLKKRQKE E - EAEEAAAAAEAEAAA E PAEE 333
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 353 SV KAV L RTSEI EL A LG K mvst R L L ----- GAHQE L AF R VGKM R KKF A TQY GFVVP EIKVT D DIAIAEKS Y Q I R I H G TT VA 427
Cdd:COG1298 334 SV DDL L PVDPL EL E LG Y ---- G L I plvde SQGGD L LD R IKGI R RQL A QEL GFVVP PVRIR D NLQLKPNE Y R I K I K G VE VA 409
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 428 SNL LR VGEV L VVTGA G RRPSI PG DEIR EPAFG M PAV S I LENFADDLKRE G FQPI D NVS V VL TH M SEVI RNNLPQ LL SYKD 507
Cdd:COG1298 410 RGE LR PDRL L AINPG G VTGEL PG IPTK EPAFG L PAV W I DPEQREEAELL G YTVV D PST V IA TH L SEVI KRHAAE LL GRQE 489
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 508 V KV L I DRL DP EY K KL AD E ICSSHM S YSG LQ A VL KL LL A ERVSIR N L HL ILE AV A EL AP HVRKTEQIV EHVR IRMAQ Q LCG 587
Cdd:COG1298 490 V QQ L L DRL KK EY P KL VE E LVPKLL S LGE LQ K VL QN LL R ERVSIR D L RT ILE TL A DY AP RTKDPDLLT EHVR QALGR Q IVQ 569
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 588 DL A D - N G V L R V LR L GSKWDLAFHQA L KRDAK G E vi EFDI DP RSLEEFSEQATKVIREFMDR G L P FA L VT SP ET R S Y V R MI 666
Cdd:COG1298 570 QY A G p D G E L P V IT L DPELEQLLLES L QQTEQ G S -- YLAL DP GLAQRLLQSLAEAVEKLEAQ G E P PV L LV SP QL R P Y L R RL 647
650 660
....*....|....*....|....*....
gi 517297585 667 I ER LFAT LPVLS HV E LAKGI EI KIL G SIS 695
Cdd:COG1298 648 L ER FLPD LPVLS YN E IPPDV EI ESV G TVG 676
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
17-694
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 856.18
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 17 RD VGF A L G IIG I ICILF LP I P P FL I D MG LA FS IA F S V LIL M V A L W IQKPLDFSSFPT I LLIAT MT RL A LN I A T TR V IL S H 96
Cdd:TIGR01398 2 RD LLL A I G VVA I LAVMI LP L P A FL L D IL LA LN IA L S L LIL L V T L F IQKPLDFSSFPT L LLIAT LF RL S LN V A S TR L IL T H 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 97 G N EG HE AAG G VI AG F ASL V MS G DF VIGLIVF L ILI TI NFIVITKGATRIAEV G ARFTLDA I PGKQM S IDADL S AG I I D E R 176
Cdd:TIGR01398 82 G H EG PN AAG K VI EA F GQF V VG G NY VIGLIVF I ILI IV NFIVITKGATRIAEV A ARFTLDA M PGKQM A IDADL N AG L I T E E 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 177 EA QR RR K ELE E E SS F F GAMDGASKFV R GDA V AG L IIT C INI F GG I IIG YFR HGM PIGE AA DVFVK L SV GDGLV S Q M PALI 256
Cdd:TIGR01398 162 EA KK RR E ELE Q E AD F Y GAMDGASKFV K GDA I AG I IIT L INI I GG L IIG VVQ HGM SLSD AA STYTI L TI GDGLV A Q I PALI 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 257 V S L A A GL L V S R GGTT GS TDQ A V V N QL SGY PRAL SVS A VLMFI LAL M PGLP FI PF VV L G G L LAF G AW FIP R QVEA E NMLRR 336
Cdd:TIGR01398 242 I S T A T GL I V T R ASSE GS FGK A I V T QL GAN PRAL LIV A AVLGL LAL V PGLP TF PF LF L A G A LAF L AW YLR R RSKQ E EEAAA 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 337 E QEEKKVVQSK E l E KD S VKAV L RTSEI EL A LG KMVSTRLL - GAHQE L AF R VGKM RK KF A TQ YGFV V P E I KVT D DIAIAEK 415
Cdd:TIGR01398 322 E AAKAQEEAAE E - E EE S INDI L ALDDL EL E LG YGLIPLVD d SQGGD L LD R IRSI RK QL A QE YGFV M P V I RIR D NLRLPPN 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 416 S Y Q I R I H G TT VA SNL LR V G EV L VVTGAGRRPS IPG D E I REPAFG M PA VS I L E NFADDLK R E G FQPI D NVS V VL TH M SEVI 495
Cdd:TIGR01398 401 E Y R I K I K G VE VA RGE LR P G KY L AMNPGNADGE IPG E E T REPAFG L PA YW I S E KNKEEAE R L G YTVV D PAT V LA TH L SEVI 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 496 R NN LPQ LL SYKD V KV L I DRL DP EY K KL AD E ICSSHMSYSGL Q A VL K LLL A ERVSIRNL HL ILE AV A EL AP HVRKTEQI VE 575
Cdd:TIGR01398 481 K NN AAE LL TRQE V QN L L DRL KE EY P KL VE E LIPDKVPLGTI Q K VL Q LLL R ERVSIRNL PT ILE TL A DY AP ITKDPDLL VE 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 576 HVR I R MAQ Q LCGDLA - DN GVL R V LR L GSKWDL A FHQ ALKRD AK GE VI ef D ID P RS LEE FSEQAT K VIREFMDR G LPFA L V 654
Cdd:TIGR01398 561 HVR Q R LGR Q ITQQYL d ED GVL P V IT L DPDLEA A LAE ALKRD GE GE LL -- D LE P AL LEE LVRAVR K AVEKLANN G ERPV L L 638
650 660 670 680
....*....|....*....|....*....|....*....|
gi 517297585 655 TSP ET R S YVR M I I ER L F AT LPVLS HV E LAKGIEIKIL G SI 694
Cdd:TIGR01398 639 TSP RV R P YVR R I L ER F F PE LPVLS YN E IPDNVRVETV G VV 678
FHIPEP
pfam00771 FHIPEP family;
33-683
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 823.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 33 F LP I PPFL I D MG LAF S IA F S V LIL M VAL W I QK PLDFS S FPT I LLI A T MT RLALN I A T TR V IL S HG neg HEAAG G VI AG F A 112
Cdd:pfam00771 6 I LP L PPFL L D LL LAF N IA L S L LIL L VAL Y I KR PLDFS V FPT L LLI T T LF RLALN V A S TR L IL L HG --- HEAAG K VI EA F G 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 113 SL V MS G DF V I GL I VFLIL ITIN FIVITKGA T R I AEV G ARFTLDA I PGKQM S IDADL S AG I IDE R EA Q RRR K EL EE E SS F F 192
Cdd:pfam00771 83 QF V VG G NY V V GL V VFLIL VIVQ FIVITKGA E R V AEV A ARFTLDA M PGKQM A IDADL N AG L IDE E EA R RRR E EL QR E AD F Y 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 193 GAMDGASKFV R GDA V AG L IIT C INI F GG I IIG YFR HGM PI GEAA DVFVK L SV GDGLVSQ M PAL IV S L AAG LL V S R GGTT G 272
Cdd:pfam00771 163 GAMDGASKFV K GDA I AG I IIT L INI I GG L IIG VLQ HGM SF GEAA QTYTL L TI GDGLVSQ I PAL LI S T AAG II V T R VASE G 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 273 STDQAV V N QL SGY P R AL SVS A VLMFI L A L M PGLP FI PF VV L GG LL A F G A WFIP R qveaenmlrre QEE K KVVQSK E L E KD 352
Cdd:pfam00771 243 NLGEEI V G QL FAN P K AL YIA A GVLLL L G L I PGLP TL PF LL L AA LL G F L A YRLR R ----------- RKK K AAAEEA E A E EA 311
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 353 SVK AVL RTSEI EL A LG KMVSTRLLGA - HQE L AF R VGKM R KKF A TQY GFVVP E I KVT D DIAIAEKS Y Q I R I H G TT VA SNL L 431
Cdd:pfam00771 312 AAA AVL PVDPL EL E LG YGLIPLVDES q GGD L LD R IKGI R RQL A LEL GFVVP P I RIR D NLQLKPNE Y R I K I K G VE VA RGE L 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 432 RVGEV L VVTGA G RRPS IPG DEIR EPAFG M PAV S I L E NFADDLKRE G FQPI D NVS V VL TH MS EVI RNNLPQ LL SYKD V KV L 511
Cdd:pfam00771 392 LPDHL L AMNPG G VLGE IPG IPTK EPAFG L PAV W I D E EQREEAELA G YTVV D PPT V IA TH LT EVI KRHAAE LL GRQE V QA L 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 512 I D R L DP EY K KL AD E ICSSHM S YSGL Q A VL KL LL A ERVSIR N L HL ILE AV A EL AP HVRKTEQIV E H VR IRMAQ Q L C GDL A D 591
Cdd:pfam00771 472 L D N L KK EY P KL VE E LVPKLL S LGEI Q K VL QN LL R ERVSIR D L RT ILE TL A DY AP KTKDPDLLT E Y VR QALGR Q I C QQY A G 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 592 - N G V L R V LR L GSKWDLAFHQA L k RDAK G EVIEFDI DP RSLEEFS E QATKVIREFMDR G L P FA L V TSP ET R S Y V R MII ER L 670
Cdd:pfam00771 552 e D G T L P V IT L DPELEQLLRES L - QQSE G QGSYLAL DP DLAQRLL E ALSEAVEKLEQQ G E P PV L L TSP DI R R Y L R RLL ER F 630
650
....*....|...
gi 517297585 671 FAT LPVLS HV E LA 683
Cdd:pfam00771 631 LPD LPVLS YN E IP 643
Name
Accession
Description
Interval
E-value
flhA
PRK12792 flagellar biosynthesis protein FlhA; Reviewed
1-695
0e+00
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 1110.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 1 MA QPP ALPL PKV ap S L RD V GFA L GI IG I ICI LFLP I P PF LID M GLAFSIA F SVLILMVALWIQ K PL D FS S FPT I LLIAT M 80
Cdd:PRK12792 2 MA LSE ALPL ERR -- S R RD F GFA V GI VA I LAV LFLP V P AV LID I GLAFSIA L SVLILMVALWIQ R PL E FS A FPT V LLIAT L 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 81 T RLALNIATTR V ILS H G N EG HE AAG G VIAGF ASL VMSGDFVIGL I VF L ILIT I NF I VITKGATRIAEVGARFTLDAIPGK 160
Cdd:PRK12792 80 L RLALNIATTR L ILS N G Q EG VD AAG H VIAGF SQF VMSGDFVIGL V VF A ILIT V NF L VITKGATRIAEVGARFTLDAIPGK 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 161 QM S IDADLSAG I ID ER EAQRRR K ELEEES S FFG A MDGASKFVRGDA V A G LII TCI NIFGGIIIG YF RHGMP I G E AADVF V 240
Cdd:PRK12792 160 QM A IDADLSAG L ID DK EAQRRR R ELEEES A FFG S MDGASKFVRGDA I A S LII IAV NIFGGIIIG VT RHGMP L G Q AADVF T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 241 KLSVGDGLVSQ M PALIVSLAAGLLVS R GGT T GS TD QAV VN QL SG YPRALSV S A V LMF I LA LM PGLPF I PF VV LGG LL AF G 320
Cdd:PRK12792 240 KLSVGDGLVSQ I PALIVSLAAGLLVS K GGT R GS AE QAV LG QL GA YPRALSV A A L LMF V LA IV PGLPF L PF AL LGG VM AF V 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 321 A WF IPR QVE A ENMLRREQEEKKVVQSKELE KDSVK AV LRT S EIEL A LGK MVSTR L L GAH Q ELA F RV G KMR K KFA T QYGFV 400
Cdd:PRK12792 320 A YT IPR RRA A RAAAEAAKVKREEESAQAEA KDSVK EQ LRT A EIEL C LGK QLAAQ L Q GAH A ELA H RV A KMR R KFA K QYGFV 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 401 VPEIK V TD DIAIAE K S YQI R IHGT T VA SNL LR V GE V LVV T G A G R RP SI PG D E I REPAFGM P A VSILEN FA DDLK R E GF Q P 480
Cdd:PRK12792 400 VPEIK L TD SLSLPP K T YQI K IHGT V VA TQE LR P GE L LVV V G D G P RP DV PG E E V REPAFGM K A LWVPDA FA NEVR R D GF E P 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 481 I DN V SV V LTH M SEVIRNNLPQLLSYKD VKV L I DRLDPEYK K L A D E IC S S HM SYSGLQAVLKLLLAERVSIRNLHLILEAV 560
Cdd:PRK12792 480 V DN A SV L LTH L SEVIRNNLPQLLSYKD MRA L L DRLDPEYK R L I D D IC P S QI SYSGLQAVLKLLLAERVSIRNLHLILEAV 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 561 AE L APH V R KT EQI V EHVR I R M AQQ L CGDL A DNGVL R VLRLG SK WDLAFHQ A LKRDAKGEV I EFDIDPR SL E E F SEQ A TKV 640
Cdd:PRK12792 560 AE I APH A R RA EQI A EHVR M R I AQQ I CGDL S DNGVL K VLRLG NR WDLAFHQ S LKRDAKGEV V EFDIDPR LV E Q F GTE A SEA 639
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 517297585 641 IRE F MD R G LP F A LVT S PE T R S YVRMIIERLF A TLPVLSH V E L A K G I EIK I LG S IS 695
Cdd:PRK12792 640 IRE R MD Q G HQ F V LVT A PE A R P YVRMIIERLF P TLPVLSH L E I A R G V EIK S LG T IS 694
flhA
PRK06012 flagellar type III secretion system protein FlhA;
1-695
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 923.75
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 1 MAQPPALPLPKVAP - SL RD VGF A LGIIG I ICILF LP I PPFL I D MG L A F S IA F SVLIL M VAL W IQ K PLDFS S FPT I LLI A T 79
Cdd:PRK06012 2 NLAAMLRLPGNLKL l KW RD LAV A ILVLA I LAMMI LP L PPFL L D LL L T F N IA L SVLIL L VAL F IQ R PLDFS A FPT L LLI T T 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 80 MT RLALN I A T TR V IL SH G N EG HE AAG G VI AG F ASL V MS G D FV I G LI VF L IL IT INF I VITKGA T RIAEV G ARFTLDA I PG 159
Cdd:PRK06012 82 LL RLALN V A S TR L IL LE G H EG TD AAG K VI EA F GHF V VG G N FV V G IV VF I IL VI INF V VITKGA G RIAEV A ARFTLDA M PG 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 160 KQM S IDADL S AG I IDE R EA QR RRKEL EE E SS F F GAMDGASKFV R GDA V AG LI IT C INI F GG I IIG YFR HGM PI GEAA DVF 239
Cdd:PRK06012 162 KQM A IDADL N AG L IDE E EA KK RRKEL QQ E AD F Y GAMDGASKFV K GDA I AG IL IT V INI I GG L IIG VVQ HGM SF GEAA ETY 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 240 VK L SV GDGLVSQ M PAL IV S L AAG LL V S R GGTT G STDQAV V N QL SGY P R AL SVS A VLM F I L A L M PG L P FI PF VV L G GLL A F 319
Cdd:PRK06012 242 TL L TI GDGLVSQ I PAL LI S T AAG II V T R VSSD G DVGEQI V G QL FAN P K AL YIA A GVL F L L G L V PG M P HL PF LL L A GLL G F 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 320 G A WFIPRQVEAE nm LRREQ EE KKVVQSK E L E KD S VKA VL RTSEI EL AL G KMVSTRLLGA - HQ EL AF R VGKM RKK F A TQY G 398
Cdd:PRK06012 322 L A YRLRKREKKA -- AELAA EE AEEEEAA E P E EE S WDD VL PVDPL EL EV G YGLIPLVDEN q GG EL LD R IRSI RKK I A QEL G 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 399 F V VP EIKVT D DIAIAEKS Y Q I R I H G TT V A S NL LR V G EV L VVTGA G RRPSI PG DEIR EPAFG M PAV S I L E NFADDLKRE G F 478
Cdd:PRK06012 400 F L VP PVRIR D NLQLPPNE Y R I K I K G VE V G S GE LR P G RL L AMNPG G VDGEL PG IPTK EPAFG L PAV W I D E ALREQAQLL G Y 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 479 QPI D NVS VV L TH MS EVI R N NLPQ LL SYKD V KV L I DRL DP EY K KL AD E ICSSHM S YSG LQ A VL KL LL A ERVSIR N L HL ILE 558
Cdd:PRK06012 480 TVV D PST VV A TH LT EVI K N HAAE LL GRQE V QQ L L DRL AK EY P KL VE E LVPKVL S LGT LQ K VL QN LL K ERVSIR D L RT ILE 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 559 AV A EL AP HVRKTEQIV EHVR I R MAQ Q LCGDLAD - N G V L R V LR L GSKWDLAFH Q A L KRDAK G E vi EFDID P RSL E EFSEQA 637
Cdd:PRK06012 560 TL A DY AP ITKDPDELT EHVR Q R LGR Q IVQQYKG e D G E L P V IT L DPELEQLLL Q S L QGTGG G S -- YLALE P GLA E RLLQSL 637
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 517297585 638 TKVIREFMDR G L P FA L VT SP ET R S Y V R MII ER LFAT LPVLS HV E LAKG IEI K I L G SIS 695
Cdd:PRK06012 638 QEALERQEMK G E P PV L LV SP AL R P Y L R RLL ER FLPQ LPVLS YN E IPDN IEI R I V G TVG 695
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
33-695
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 885.93
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 33 F LP I PPFL I D MG LAF S IA F S V LIL M VAL W I QK PLDFS S FPT I LLI A T MT RL A LN I A T TR V IL SH G N EG HE AAG G VI AG F A 112
Cdd:COG1298 15 I LP L PPFL L D LL LAF N IA L S L LIL L VAL Y I KR PLDFS V FPT L LLI T T LF RL S LN V A S TR L IL LE G H EG TD AAG K VI EA F G 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 113 SL V MS G DF V I GL I VFLIL IT INF I VITKGA T RIAEV G ARFTLDA I PGKQM S IDADL S AG I IDE R EA Q RRR K E LEE E SS F F 192
Cdd:COG1298 95 EF V VG G NY V V GL V VFLIL VI INF V VITKGA G RIAEV A ARFTLDA M PGKQM A IDADL N AG L IDE E EA R RRR E E IQR E AD F Y 174
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 193 GAMDGASKFVRGDA V AG LI IT C INI F GG I IIG YFR HGM PI GEAA DVFVK L SV GDGLVSQ M PAL IV S L AAG LL V S R G G TT G 272
Cdd:COG1298 175 GAMDGASKFVRGDA I AG IL IT L INI I GG L IIG VLQ HGM SF GEAA QTYTL L TI GDGLVSQ I PAL LI S T AAG II V T R A G SE G 254
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 273 STDQAVVN QL SGY P R AL SVS A VLMFI L A L M PG L P FI PF VV L GG LL AFG A WFIPRQVEA E n MLRREQEEKKVVQSK E LEKD 352
Cdd:COG1298 255 DLGEQLSG QL FAN P K AL YIA A GVLGL L G L I PG M P HL PF LL L AA LL GGL A YRLKKRQKE E - EAEEAAAAAEAEAAA E PAEE 333
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 353 SV KAV L RTSEI EL A LG K mvst R L L ----- GAHQE L AF R VGKM R KKF A TQY GFVVP EIKVT D DIAIAEKS Y Q I R I H G TT VA 427
Cdd:COG1298 334 SV DDL L PVDPL EL E LG Y ---- G L I plvde SQGGD L LD R IKGI R RQL A QEL GFVVP PVRIR D NLQLKPNE Y R I K I K G VE VA 409
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 428 SNL LR VGEV L VVTGA G RRPSI PG DEIR EPAFG M PAV S I LENFADDLKRE G FQPI D NVS V VL TH M SEVI RNNLPQ LL SYKD 507
Cdd:COG1298 410 RGE LR PDRL L AINPG G VTGEL PG IPTK EPAFG L PAV W I DPEQREEAELL G YTVV D PST V IA TH L SEVI KRHAAE LL GRQE 489
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 508 V KV L I DRL DP EY K KL AD E ICSSHM S YSG LQ A VL KL LL A ERVSIR N L HL ILE AV A EL AP HVRKTEQIV EHVR IRMAQ Q LCG 587
Cdd:COG1298 490 V QQ L L DRL KK EY P KL VE E LVPKLL S LGE LQ K VL QN LL R ERVSIR D L RT ILE TL A DY AP RTKDPDLLT EHVR QALGR Q IVQ 569
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 588 DL A D - N G V L R V LR L GSKWDLAFHQA L KRDAK G E vi EFDI DP RSLEEFSEQATKVIREFMDR G L P FA L VT SP ET R S Y V R MI 666
Cdd:COG1298 570 QY A G p D G E L P V IT L DPELEQLLLES L QQTEQ G S -- YLAL DP GLAQRLLQSLAEAVEKLEAQ G E P PV L LV SP QL R P Y L R RL 647
650 660
....*....|....*....|....*....
gi 517297585 667 I ER LFAT LPVLS HV E LAKGI EI KIL G SIS 695
Cdd:COG1298 648 L ER FLPD LPVLS YN E IPPDV EI ESV G TVG 676
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
17-694
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 856.18
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 17 RD VGF A L G IIG I ICILF LP I P P FL I D MG LA FS IA F S V LIL M V A L W IQKPLDFSSFPT I LLIAT MT RL A LN I A T TR V IL S H 96
Cdd:TIGR01398 2 RD LLL A I G VVA I LAVMI LP L P A FL L D IL LA LN IA L S L LIL L V T L F IQKPLDFSSFPT L LLIAT LF RL S LN V A S TR L IL T H 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 97 G N EG HE AAG G VI AG F ASL V MS G DF VIGLIVF L ILI TI NFIVITKGATRIAEV G ARFTLDA I PGKQM S IDADL S AG I I D E R 176
Cdd:TIGR01398 82 G H EG PN AAG K VI EA F GQF V VG G NY VIGLIVF I ILI IV NFIVITKGATRIAEV A ARFTLDA M PGKQM A IDADL N AG L I T E E 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 177 EA QR RR K ELE E E SS F F GAMDGASKFV R GDA V AG L IIT C INI F GG I IIG YFR HGM PIGE AA DVFVK L SV GDGLV S Q M PALI 256
Cdd:TIGR01398 162 EA KK RR E ELE Q E AD F Y GAMDGASKFV K GDA I AG I IIT L INI I GG L IIG VVQ HGM SLSD AA STYTI L TI GDGLV A Q I PALI 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 257 V S L A A GL L V S R GGTT GS TDQ A V V N QL SGY PRAL SVS A VLMFI LAL M PGLP FI PF VV L G G L LAF G AW FIP R QVEA E NMLRR 336
Cdd:TIGR01398 242 I S T A T GL I V T R ASSE GS FGK A I V T QL GAN PRAL LIV A AVLGL LAL V PGLP TF PF LF L A G A LAF L AW YLR R RSKQ E EEAAA 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 337 E QEEKKVVQSK E l E KD S VKAV L RTSEI EL A LG KMVSTRLL - GAHQE L AF R VGKM RK KF A TQ YGFV V P E I KVT D DIAIAEK 415
Cdd:TIGR01398 322 E AAKAQEEAAE E - E EE S INDI L ALDDL EL E LG YGLIPLVD d SQGGD L LD R IRSI RK QL A QE YGFV M P V I RIR D NLRLPPN 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 416 S Y Q I R I H G TT VA SNL LR V G EV L VVTGAGRRPS IPG D E I REPAFG M PA VS I L E NFADDLK R E G FQPI D NVS V VL TH M SEVI 495
Cdd:TIGR01398 401 E Y R I K I K G VE VA RGE LR P G KY L AMNPGNADGE IPG E E T REPAFG L PA YW I S E KNKEEAE R L G YTVV D PAT V LA TH L SEVI 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 496 R NN LPQ LL SYKD V KV L I DRL DP EY K KL AD E ICSSHMSYSGL Q A VL K LLL A ERVSIRNL HL ILE AV A EL AP HVRKTEQI VE 575
Cdd:TIGR01398 481 K NN AAE LL TRQE V QN L L DRL KE EY P KL VE E LIPDKVPLGTI Q K VL Q LLL R ERVSIRNL PT ILE TL A DY AP ITKDPDLL VE 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 576 HVR I R MAQ Q LCGDLA - DN GVL R V LR L GSKWDL A FHQ ALKRD AK GE VI ef D ID P RS LEE FSEQAT K VIREFMDR G LPFA L V 654
Cdd:TIGR01398 561 HVR Q R LGR Q ITQQYL d ED GVL P V IT L DPDLEA A LAE ALKRD GE GE LL -- D LE P AL LEE LVRAVR K AVEKLANN G ERPV L L 638
650 660 670 680
....*....|....*....|....*....|....*....|
gi 517297585 655 TSP ET R S YVR M I I ER L F AT LPVLS HV E LAKGIEIKIL G SI 694
Cdd:TIGR01398 639 TSP RV R P YVR R I L ER F F PE LPVLS YN E IPDNVRVETV G VV 678
FHIPEP
pfam00771 FHIPEP family;
33-683
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 823.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 33 F LP I PPFL I D MG LAF S IA F S V LIL M VAL W I QK PLDFS S FPT I LLI A T MT RLALN I A T TR V IL S HG neg HEAAG G VI AG F A 112
Cdd:pfam00771 6 I LP L PPFL L D LL LAF N IA L S L LIL L VAL Y I KR PLDFS V FPT L LLI T T LF RLALN V A S TR L IL L HG --- HEAAG K VI EA F G 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 113 SL V MS G DF V I GL I VFLIL ITIN FIVITKGA T R I AEV G ARFTLDA I PGKQM S IDADL S AG I IDE R EA Q RRR K EL EE E SS F F 192
Cdd:pfam00771 83 QF V VG G NY V V GL V VFLIL VIVQ FIVITKGA E R V AEV A ARFTLDA M PGKQM A IDADL N AG L IDE E EA R RRR E EL QR E AD F Y 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 193 GAMDGASKFV R GDA V AG L IIT C INI F GG I IIG YFR HGM PI GEAA DVFVK L SV GDGLVSQ M PAL IV S L AAG LL V S R GGTT G 272
Cdd:pfam00771 163 GAMDGASKFV K GDA I AG I IIT L INI I GG L IIG VLQ HGM SF GEAA QTYTL L TI GDGLVSQ I PAL LI S T AAG II V T R VASE G 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 273 STDQAV V N QL SGY P R AL SVS A VLMFI L A L M PGLP FI PF VV L GG LL A F G A WFIP R qveaenmlrre QEE K KVVQSK E L E KD 352
Cdd:pfam00771 243 NLGEEI V G QL FAN P K AL YIA A GVLLL L G L I PGLP TL PF LL L AA LL G F L A YRLR R ----------- RKK K AAAEEA E A E EA 311
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 353 SVK AVL RTSEI EL A LG KMVSTRLLGA - HQE L AF R VGKM R KKF A TQY GFVVP E I KVT D DIAIAEKS Y Q I R I H G TT VA SNL L 431
Cdd:pfam00771 312 AAA AVL PVDPL EL E LG YGLIPLVDES q GGD L LD R IKGI R RQL A LEL GFVVP P I RIR D NLQLKPNE Y R I K I K G VE VA RGE L 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 432 RVGEV L VVTGA G RRPS IPG DEIR EPAFG M PAV S I L E NFADDLKRE G FQPI D NVS V VL TH MS EVI RNNLPQ LL SYKD V KV L 511
Cdd:pfam00771 392 LPDHL L AMNPG G VLGE IPG IPTK EPAFG L PAV W I D E EQREEAELA G YTVV D PPT V IA TH LT EVI KRHAAE LL GRQE V QA L 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 512 I D R L DP EY K KL AD E ICSSHM S YSGL Q A VL KL LL A ERVSIR N L HL ILE AV A EL AP HVRKTEQIV E H VR IRMAQ Q L C GDL A D 591
Cdd:pfam00771 472 L D N L KK EY P KL VE E LVPKLL S LGEI Q K VL QN LL R ERVSIR D L RT ILE TL A DY AP KTKDPDLLT E Y VR QALGR Q I C QQY A G 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 592 - N G V L R V LR L GSKWDLAFHQA L k RDAK G EVIEFDI DP RSLEEFS E QATKVIREFMDR G L P FA L V TSP ET R S Y V R MII ER L 670
Cdd:pfam00771 552 e D G T L P V IT L DPELEQLLRES L - QQSE G QGSYLAL DP DLAQRLL E ALSEAVEKLEQQ G E P PV L L TSP DI R R Y L R RLL ER F 630
650
....*....|...
gi 517297585 671 FAT LPVLS HV E LA 683
Cdd:pfam00771 631 LPD LPVLS YN E IP 643
EscV
COG4789 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
34-695
0e+00
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 534.37
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 34 LP I P PF L I D MGL A FS I AF SVL I LMVA LW I QK PL D FS S FP TI LLI A T MT RLAL N I A TTR V IL SHGNE GH eaagg V I AG F AS 113
Cdd:COG4789 26 LP L P TY L V D ILI A LN I TI SVL L LMVA MY I PS PL A FS T FP SV LLI T T LF RLAL S I S TTR L IL LQADA GH ----- I I ET F GN 100
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 114 L V MS G DF V I GL IV FLI LITIN FIVITKG AT R I AEV G ARF T LDA I PGKQMSIDADL S AG I ID ER EA Q RRR KE LE E ES SFF G 193
Cdd:COG4789 101 F V VG G NL V V GL VI FLI ITVVQ FIVITKG SE R V AEV A ARF S LDA M PGKQMSIDADL R AG V ID AD EA R RRR AL LE K ES QLY G 180
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 194 AMDGA S KFV R GDA V AG L II TCI NI F GGI I IG YFR HGM PIG EA ADVFVK L SV GDGLV S Q M PAL IV S LA AG LL V S R GGTTGS 273
Cdd:COG4789 181 AMDGA M KFV K GDA I AG I II ILV NI I GGI A IG VLQ HGM SAS EA LHTYSI L TI GDGLV A Q I PAL LI S IT AG II V T R VSGDED 260
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 274 TD -- QAV V N QL SGY P R AL SVS AVL MFIL AL M PG L P FIP F VV L GG LL AFGAWFIP R QVEAENMLRREQEEKKVVQSKELEK 351
Cdd:COG4789 261 SN lg REI V S QL LAQ P K AL LIA AVL LLLF AL I PG F P TLV F LL L AA LL GGLGFKLL R RKRRAAAAAESEPLPALQAAGAKGS 340
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 352 DSVKAVLRTSEIELA L GKMV S TR L LG -- AHQE L AFRVGKM R KKFATQY G FVV P E I KVTDDIAIAEKS Y Q I RIHGTT VA SN 429
Cdd:COG4789 341 EAGLIDGDDFPPTVP L ILRL S PS L AP al EAEA L NQEIRRL R NRLFEDL G VPL P G I HIRFNPGLPDDE Y S I LLNEVP VA RG 420
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 430 L L RV G EV LV VT -- GAGRRPS IP GD E IRE P AFGM P AVSILENF A DD L KRE G FQPI D NVS V VLT H M S E V I R NNLPQLLSYKD 507
Cdd:COG4789 421 T L PP G HL LV RD dv DELEALG IP AE E GEL P LGEG P SLWVPAEH A EL L EKA G IKVR D AED V LAL H L S L V L R RHAAEFIGIQE 500
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 508 VKV L I D RLDPE Y KK L AD E i CSSHMSYSGLQA VL KL L LA E RV SIRNL H LILEA VA E LA P HVRKTEQIV E H VRI RMAQQL C G 587
Cdd:COG4789 501 TRY L L D QMEKK Y PE L VK E - VQRVLPLQRIAE VL QR L VE E GI SIRNL R LILEA LI E WG P KEKDVVMLT E Y VRI ALKRYI C H 579
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 588 DLA - DN G V L RV L R L GSKWDLAFHQ A LKRDAK G EV ie FDI DP RSLEEFS EQ ATKVIREFMDR G LPFA L V TS PET R SY VR MI 666
Cdd:COG4789 580 RYS g GQ G T L PA L L L DPEIEEMIRG A IRQTSA G SF -- LAL DP EQSQAIL EQ LRQALGPLPPG G QDPV L L TS MDI R RF VR KL 657
650 660
....*....|....*....|....*....
gi 517297585 667 IER L F AT LPVLS HV EL AKG I EIKI LG S I S 695
Cdd:COG4789 658 IER E F PD LPVLS YQ EL TPE I RVQP LG R I D 686
hrcV
TIGR01399 type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
18-694
8.32e-151
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 453.34
E-value: 8.32e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 18 D VGF AL GIIG II CILF LP I P PF L I D MGL A FS I AF SVL I LM V A LW I QK PL DF S S FP TI LLI A T MT RLAL N I A TTR V IL S H G 97
Cdd:TIGR01399 4 D LVL AL LLLA II SMMI LP L P TL L V D ILI A IN I TI SVL L LM I A IY I PR PL AL S T FP SV LLI T T LF RLAL S I S TTR L IL L H A 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 98 NE G H eaagg V I AG F ASL V MS G DFVI GL IV FLI LITIN FIVITKG AT R I AEV G ARF T LDA I PGKQMSIDADL S AG I ID ER E 177
Cdd:TIGR01399 84 DA G N ----- I I EA F GQF V VG G NLAV GL VI FLI ITIVQ FIVITKG SE R V AEV S ARF S LDA M PGKQMSIDADL R AG V ID AD E 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 178 A Q RRR KE LE E ES SFF GAMDGA S KFV R GDA V AG L II TC INI F GGI I IG YFR HGM PIG EA ADVFVK L SV GDGLVSQ M PAL IV 257
Cdd:TIGR01399 159 A R RRR ST LE K ES QLY GAMDGA M KFV K GDA I AG I II VL INI I GGI S IG VTQ HGM SAS EA LHLYTV L TI GDGLVSQ I PAL LI 238
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 258 S LA AG LL V S R GGTTGSTDQA -- VVN QL SGY PRAL SVS AVL MFIL AL M PG L P FIP F VV L GG LLA FGAWFIP R Q ------- V 328
Cdd:TIGR01399 239 S VT AG II V T R VPGEAERNLG re IGH QL TSQ PRAL LLA AVL LLGF AL I PG F P LLV F AL L AV LLA AAGYLLS R R krsraka N 318
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 329 E A ENMLRREQEEKKVVQS K E L EKDSV kavlr TSEIE L A L GKMVSTRLLGAHQELAFR vg K MR KKFATQY G FVV P E I KVTD 408
Cdd:TIGR01399 319 K A QASGAVASAPGAAAPI K N L DPFAE ----- ACPLI L R L SPDLQSSADKDTLDQEIE -- R MR WALFEDL G IPL P G I IIRV 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 409 DIAIAEKSYQ I RIHGTT V ASNLLRV G E V LVVT G AGR -- RPS IP GDEIREPAFGMPA V SIL E NF A DD L KRE G FQPIDNVS V 486
Cdd:TIGR01399 392 GDSLPDNEFR I LLYEVP V LRDTIPP G H V ALND G VDN ie VAG IP AISGKRWPGESQR V WVT E EG A EK L QGA G LGYFSDSQ V 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 487 VLTHMSEVIRN N LPQLLSYKDVKV L I D RLDP EY KK L AD E I c SSHMSYSGLQA VL KL L LA E R VSIRNL H LILE AVA E L A PH 566
Cdd:TIGR01399 472 ITHRLKATLLR N AQEFIGIQETRY L L D QMER EY PE L VK E V - QRVLPLQRIAE VL QR L VS E Q VSIRNL R LILE TLI E W A QR 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 567 VRKTEQIV E H VRI RMAQQL C GDL A D - NGV L RVLRLGSKWDLAFHQ A LKRDAK G EV ie FDI DP RSL E EFSE Q ATKVIREFM 645
Cdd:TIGR01399 551 EKDVVMLT E Y VRI ALKRYI C HRY A N g GRQ L SAVLIDPEIEELIRG A IRQTST G TY -- LAL DP DDS E QLLD Q IRQAVGDLP 628
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 517297585 646 DRGLPFA L V TS PET R S YVR MI IE RL F AT LPVLS HV EL AKG IE IKI LG S I 694
Cdd:TIGR01399 629 RAPSQPV L L TS MDI R R YVR KM IE SE F PD LPVLS YQ EL GEE IE VQV LG R I 677
PRK12720
PRK12720 EscV/YscV/HrcV family type III secretion system export apparatus protein;
34-694
4.97e-128
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 183699 [Multi-domain]
Cd Length: 675
Bit Score: 394.47
E-value: 4.97e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 34 LP I P PFLI D MGL A FSIA FSV LI LM V A LWIQK PL D FS S FP TI LLI A T MT RLAL N I A T T R VI L SHGN eghea AG GVIAG F AS 113
Cdd:PRK12720 32 LP L P TWMV D ILI A INLM FSV IL LM I A IYLRD PL E FS V FP SL LLI T T LY RLAL T I S T S R LV L LQHD ----- AG EIVDA F GK 106
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 114 L V MS G DFVI GLIVF L I LITIN FIVITKG AT R I AEV G ARF T LD AI PGKQMSID A D LS AG I ID ER EA Q R R R KELEE ES SFF G 193
Cdd:PRK12720 107 F V VG G NLAV GLIVF T I ITIVQ FIVITKG SE R V AEV S ARF S LD GM PGKQMSID G D MR AG V ID AD EA R R L R QHVQK ES RLL G 186
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 194 AMDGA S KFV R GDA V AG L I ITCI NI F GGIIIG YFR H G M PIG EA ADVFVK LS V GDGL VS Q M P A L IV S LA AG LL V S R -- G GTT 271
Cdd:PRK12720 187 AMDGA M KFV K GDA I AG I I VILV NI I GGIIIG VMQ H D M SAS EA VNTYAV LS I GDGL CG Q I P S L LI S IT AG II V T R vp G EKR 266
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 272 GSTDQAVVN Q LSGY P R AL SVS AV LMFIL AL M PG L PFI P F VV L GG L L A FG A WFIP R qveaenml RREQEEKKV V QSKEL E K 351
Cdd:PRK12720 267 QNLANELSS Q IGRQ P Q AL WLA AV VLMLF AL I PG F PFI T F AF L AA L V A AP A ILLR R -------- KKSVVSANG V EAGGS E E 338
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 352 DSVKAVLRTSEIE L A L GKMVSTRLLGAHQELA frvg KM R KKFATQY G FVV PE IKVTD D IAIA EK SYQIRIHGTT V A S NL L 431
Cdd:PRK12720 339 GPEGDSMVPGACP L M L RLAPTLHSADLIRDID ---- AL R WFLFEDL G VPL PE VNIEV D PELT EK TLTVLLYQEP V L S LS L 414
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 432 RVGEV L VVT G A ----- G RRPSI P gdeirepa F GM PAVS - ILENF A DDLKRE G FQPIDNVSVVLTHMSE V IRNNLPQLLSY 505
Cdd:PRK12720 415 PPQAL L LLI G P daslv G DSQTL P -------- N GM GQIC w LTKDQ A EQAQGF G LDVFAGSQRISALLKC V LLRYMGEFIGV 486
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 506 KDVKV L I D RLDPE Y KK L AD E I c SSHMSYSGLQAV L KL L LA ERVSIR N L HL I LEAVA E L AP HVRKTEQIV E H VRI RMAQQL 585
Cdd:PRK12720 487 QETRY L M D AMEKR Y GE L VK E L - QRQLPVGKIAEI L QR L VS ERVSIR D L RT I FGTLV E W AP REKDVVMLT E Y VRI ALRRHI 565
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 586 CGDLADN G V - L R VLR L G SKWDLAFHQALKRDAK G EVIEFD idprsl EEF S E Q ATKV I REFMDRGLPFA LVTS PET R SYV R 664
Cdd:PRK12720 566 LRRFNHE G K w L P VLR I G EGIENLIRESIRQTSA G TYSALS ------ SRH S T Q ILQL I EQALKQSQKLV LVTS VDV R RFL R 639
650 660 670
....*....|....*....|....*....|
gi 517297585 665 M IIER LFAT LPVLS HV EL AKGI EIK IL GSI 694
Cdd:PRK12720 640 K IIER TLFD LPVLS WQ EL GDEA EIK VV GSI 669
PRK15337
PRK15337 EscV/YscV/HrcV family type III secretion system export apparatus protein;
34-694
5.98e-126
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 237946 [Multi-domain]
Cd Length: 686
Bit Score: 389.35
E-value: 5.98e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 34 L P I P PF L I D MGLAFS I AFSV L IL M VALW I QKP L D FS S FP T ILLI A T MT RLAL N I A T T R V IL SHGN eghea AG GV I AG F AS 113
Cdd:PRK15337 30 I P L P TY L V D FLIGLN I VLAI L VF M GSFY I DRI L S FS T FP S ILLI T T LF RLAL S I S T S R L IL LDAD ----- AG EI I TT F GQ 104
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 114 L V MSGDF V I G LIV F L I LITIN FIVITKG AT R I AEV G ARF T LD AI PGKQMSIDADL S AGIID EREAQR RR KE LE E ES SFF G 193
Cdd:PRK15337 105 F V IGDSL V V G FVI F S I VTVVQ FIVITKG SE R V AEV A ARF S LD GM PGKQMSIDADL K AGIID ADGVKE RR SV LE R ES QLY G 184
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 194 AM DGA S KF VR GDA V AG L II TCI N IF GGI II G YFR HGM PIGE A ADVFVK L SV GDGLV S Q M PAL IV S LA AG LL V S R - G G TTG 272
Cdd:PRK15337 185 SF DGA M KF IK GDA I AG I II IFV N LI GGI SV G MTQ HGM DLSS A LSTYTI L TI GDGLV A Q I PAL LI S IS AG FI V T R v N G DSD 264
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 273 STDQAVVN QL SGY P RA L S V S A V L MFILA L M PG L P FIP F VV L GGL L af G AW F IPRQVEAENMLRR E QEEKKVVQSKELEKD 352
Cdd:PRK15337 265 NLGRNIMS QL LSN P FV L V V T A I L ALSIG L L PG F P LPV F LL L AVV L -- G VL F YFKKFRKKKKSAA E PDTSGGEAPLDIDEK 342
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 353 SVKAVLRTSEIELALGKM V STR LL GAHQELAFR ----- VGKM R KK F ATQ YG FVV P E I KVTDDIAIAEK S YQIR I HGTTV A 427
Cdd:PRK15337 343 AGSSLGLIGDLDKVIPET V PLI LL VPEARRPDL ekenl AERL R SQ F FID YG VRL P D I LLRYSEGLDDN S IVVL I NEIRA A 422
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 428 SNLLRVGEVL VV TGAGRRP S IPGDEIREPAF G MPAVSILENFADD L KRE G FQPIDNVSVVLTHM S EVIRN N LPQLLSYKD 507
Cdd:PRK15337 423 QFTIYFDLHR VV NYSDELV S LGINPTIIDSG G EQYYWVPHEDTEK L AKL G YVLRSAIDELYHCL S VLLLH N INEFFGIQE 502
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 508 V K V L I D R L DPE Y KK L AD E i CSS H MSYSGLQA VL KL LL A ER V SIRN LH LI L EA V A EL AP HVRKTEQI VEHVR IRM A QQL C G 587
Cdd:PRK15337 503 T K H L L D Q L EKK Y PD L LK E - VYR H ATVQRISE VL QR LL S ER I SIRN MK LI M EA L A LW AP REKDVIML VEHVR GAL A RYI C H 581
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 588 DL A DN G V LR VLR L GSKWDL A FHQALKRDAK G EVI ef DI DP RSL E EFSEQA T KVIREFMDRGLPFA L VT S PET R SY V RMI I 667
Cdd:PRK15337 582 KF A AG G E LR AVV L SAEVED A IRKGIRQTSG G TFL -- NL DP AES E NLMDLL T LALDDLGIAHRDIV L LV S VDI R RF V KKL I 659
650 660
....*....|....*....|....*..
gi 517297585 668 E RL F AT L P VLS HV E L A KGI E IKILGS I 694
Cdd:PRK15337 660 E GR F PE L E VLS FG E I A DSV E VNVIKT I 686
PRK05910
PRK05910 type III secretion system protein; Validated
33-695
5.48e-60
type III secretion system protein; Validated
Pssm-ID: 168293
Cd Length: 584
Bit Score: 211.96
E-value: 5.48e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 33 FL P I P PF L I D M GL AFSI A F S VL I LMVALWIQKPLDFSS FP TIL L IATMT RL A LN I A T TR V ILS H G neghe A A GGV I AGFA 112
Cdd:PRK05910 24 IF P L P QW L L D F GL CINF A L S LS I VFWVFSLRSSASARL FP SLF L YLCLL RL G LN L A S TR W ILS S G ----- W A SPL I FSLG 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 113 SLVMS G DFVIG L IVF L I L ITI NF I VITKG AT RIAEV G ARF T L D A I PGKQMS I DADL SA G IIDEREAQRRRKE L E EES S FF 192
Cdd:PRK05910 99 NFFSL G SLPAA L TAC L L L FLV NF L VITKG SE RIAEV R ARF S L E A L PGKQMS L DADL VS G RASYSRVSKQKNS L L EES D FF 178
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 193 G AM D G ASK FV R GDA VAGL I I tci NIFGGIIIGYF rh G MPI G E A ADVFVKLSV GD G LVSQ M PAL IV S L AA GL L V S RG G TTG 272
Cdd:PRK05910 179 S AM E G VFR FV K GDA IMSC I L --- LGVNILAATFL -- G RAT G Y A VGDLWLTVL GD A LVSQ V PAL LT S C AA AT L I S KV G EKE 253
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 273 S TD Q AVVNQLSGYPRALSVS A V L MFI LA LM PG L P FI P FVVLGG LL AFG awfiprqveaenmlrre QEEKKVVQSKELE K D 352
Cdd:PRK05910 254 S LL Q HLLDYYEQSRQHFRFI A L L LCS LA CI PG A P KA P ILGFSV LL FLA ----------------- YKNPSSGETLLFQ K E 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 353 svkavl R TSEI ELAL gkmv STRLL G AHQE L AFRV gkm R KKFATQY G F V V PE IK V tdd IAIA E K S YQIRIH G TT V A snllr 432
Cdd:PRK05910 317 ------ R FEFV ELAL ---- PDEGV G NPAN L YRAA --- R EEIFQEL G V V F PE EI V --- VRHV E S S PRLIFS G QE V Y ----- 375
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 433 vgevlvvtgagrrpsipgdeirepafgmpavsilenfaddlkregfqp IDNV S vv LTHMSEVI RN NL P QLL S YKD VK V L I 512
Cdd:PRK05910 376 ------------------------------------------------ LREL S -- CPAILPSL RN LA P EAI S ERF VK R L V 405
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 513 DRLDPEYKKLAD EI CSSHM S YSG L QAV L KL L LA ERVS IRNLHL ILEA V A ELAPHVRKT E QI VE H VR IRMAQ Q LCGD L AD - 591
Cdd:PRK05910 406 EEFQEVAGISIE EI IPKKI S ENS L VFL L RA L VR ERVS LHLFPK ILEA I A VYGSQGKSS E EL VE K VR KYLGK Q IGRS L WN r 485
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297585 592 NGV L R V LRL gskwdlafhqalkr D AKG E VIEF D IDPR S LEEFS E QATKVIREFMD R --- G LPF A L VT SP ETR SYVRMIIE 668
Cdd:PRK05910 486 QDT L E V ITI -------------- D SHV E QFIR D SYSK S NPDMN E KVVAQVKSLLE R sge G NFR A I VT GC ETR FELKKMVD 551
650 660
....*....|....*....|....*..
gi 517297585 669 RL F AT L P VLSH V EL AKG I E I KI LG SI S 695
Cdd:PRK05910 552 PY F PD L L VLSH S EL PEE I P I SL LG AV S 578
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
