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Conserved domains on  [gi|517297703|ref|WP_018486521|]
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DUF3597 domain-containing protein [Rhizobium ruizarguesonis]

Protein Classification

DUF3597 domain-containing protein( domain architecture ID 10573554)

uncharacterized DUF3597 domain-containing protein similar to Rhodopseudomonas Palustris Rpa2825 that contains five helices with a long flexible loop between helices one and two

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3597 pfam12200
Domain of unknown function (DUF3597); This family of proteins is found in bacteria, eukaryotes ...
 3-137 1.09e-54

Domain of unknown function (DUF3597); This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two.


:

Pssm-ID: 463490  Cd Length: 127  Bit Score: 167.86  E-value: 1.09e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297703    3 IFDKIKHAIFGEAKAAE--PVAAGAPkiepaqapasPSAAPSPTPAASPAQSKPATATIDIVPILDAAVKKNGQKLDWRH 80
Cdd:pfam12200   1 IFGSILSKIFGHAAAAAaaPAASAAP----------AATAPAAAAAAAPAPAAAAAPPVDVAAVLDALAAKSGQKLNWRT 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 517297703   81 SIVDLMKAVGMDASLTERKELAAELGYTGDTNDSAKMNMWLHKALMKRLSENGGKVP 137
Cdd:pfam12200  71 SIVDLLKLLGLDSSLAARKELAKELGYTGDTNDSATMNIWLHKQVMQKLAENGGKVP 127
 
Name Accession Description Interval E-value
DUF3597 pfam12200
Domain of unknown function (DUF3597); This family of proteins is found in bacteria, eukaryotes ...
 3-137 1.09e-54

Domain of unknown function (DUF3597); This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two.


Pssm-ID: 463490  Cd Length: 127  Bit Score: 167.86  E-value: 1.09e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297703    3 IFDKIKHAIFGEAKAAE--PVAAGAPkiepaqapasPSAAPSPTPAASPAQSKPATATIDIVPILDAAVKKNGQKLDWRH 80
Cdd:pfam12200   1 IFGSILSKIFGHAAAAAaaPAASAAP----------AATAPAAAAAAAPAPAAAAAPPVDVAAVLDALAAKSGQKLNWRT 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 517297703   81 SIVDLMKAVGMDASLTERKELAAELGYTGDTNDSAKMNMWLHKALMKRLSENGGKVP 137
Cdd:pfam12200  71 SIVDLLKLLGLDSSLAARKELAKELGYTGDTNDSATMNIWLHKQVMQKLAENGGKVP 127
 
Name Accession Description Interval E-value
DUF3597 pfam12200
Domain of unknown function (DUF3597); This family of proteins is found in bacteria, eukaryotes ...
 3-137 1.09e-54

Domain of unknown function (DUF3597); This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two.


Pssm-ID: 463490  Cd Length: 127  Bit Score: 167.86  E-value: 1.09e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517297703    3 IFDKIKHAIFGEAKAAE--PVAAGAPkiepaqapasPSAAPSPTPAASPAQSKPATATIDIVPILDAAVKKNGQKLDWRH 80
Cdd:pfam12200   1 IFGSILSKIFGHAAAAAaaPAASAAP----------AATAPAAAAAAAPAPAAAAAPPVDVAAVLDALAAKSGQKLNWRT 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 517297703   81 SIVDLMKAVGMDASLTERKELAAELGYTGDTNDSAKMNMWLHKALMKRLSENGGKVP 137
Cdd:pfam12200  71 SIVDLLKLLGLDSSLAARKELAKELGYTGDTNDSATMNIWLHKQVMQKLAENGGKVP 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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