|
Name |
Accession |
Description |
Interval |
E-value |
| OmpA |
COG2885 |
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
411-695 |
3.29e-40 |
|
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 149.55 E-value: 3.29e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 411 SAGHAGYGNGDIFVSRRLDDSWGNWSEPENLGPSINTDEWDGYFTIPASGDYAYLSSRAGSLGEDDIFRLKLYPAIKPDP 490
Cdd:COG2885 9 SALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 491 VAIISGQVLDSKSKKPIASEVISEILGDSTDVSTVDYNPETGGFTMILPTQKAYTLKAKKEGYFTTSEVLDLSKDKRFRD 570
Cdd:COG2885 89 LLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 571 IRRTLLLVKIEPGQKITMREVLFQQSQYELEPGANAELDQVVAMLDKYPTMELLVEGHTDNQGEWDLNMKLSEDRVRVVK 650
Cdd:COG2885 169 AAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVK 248
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 517451762 651 EYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTILK 695
Cdd:COG2885 249 DYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLK 293
|
|
| OmpA_C-like |
cd07185 |
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
591-693 |
1.33e-36 |
|
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 132.68 E-value: 1.33e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 591 VLFQQSQYELEPGANAELDQVVAMLDKYPTMELLVEGHTDNQGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWGP 670
Cdd:cd07185 4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83
|
90 100
....*....|....*....|...
gi 517451762 671 SKPVASNTNEEKRKLNRRVEFTI 693
Cdd:cd07185 84 SRPIASNDTEEGRAKNRRVEIVI 106
|
|
| PRK10510 |
PRK10510 |
OmpA family lipoprotein; |
591-696 |
6.45e-21 |
|
OmpA family lipoprotein;
Pssm-ID: 182507 [Multi-domain] Cd Length: 219 Bit Score: 91.86 E-value: 6.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 591 VLFQQSQYELEP-GANAeLDQVVAMLDKYPTMELLVEGHTDNQGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWG 669
Cdd:PRK10510 114 VTFDSSSATLKPaGANT-LTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMG 192
|
90 100
....*....|....*....|....*..
gi 517451762 670 PSKPVASNTNEEKRKLNRRVEFTILKL 696
Cdd:PRK10510 193 PANPIASNSTAEGKAQNRRVEITLSPL 219
|
|
| OmpA |
pfam00691 |
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
593-686 |
9.35e-16 |
|
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.
Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 73.16 E-value: 9.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 593 FQQSQYELEPGANAELDQVVAMLDKYPT-MELLVEGHTDNQGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWGPS 671
Cdd:pfam00691 1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80
|
90
....*....|....*
gi 517451762 672 KPVASNTNEEKRKLN 686
Cdd:pfam00691 81 KPITDNKTPEGRARN 95
|
|
| type_VI_ompA |
TIGR03350 |
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ... |
570-693 |
2.16e-14 |
|
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274533 [Multi-domain] Cd Length: 137 Bit Score: 70.41 E-value: 2.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 570 DIRRTLLLVKIEPGQ-KITMR-EVLFQQSQYELEPGANAELDQVVAMLDKYPTmELLVEGHTDNQ----GEWDLNMKLSE 643
Cdd:TIGR03350 9 EIAAGLLTVDEDGDRsVVRLRgDELFASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNVpirtARFPSNWHLSE 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 517451762 644 DRVRVVKEYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTI 693
Cdd:TIGR03350 88 ARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
216-432 |
1.11e-03 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 40.04 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 216 NSAGQEVAPVISPDGRTLYFTrnfnkanigaSDRqdvwystrqsvangsesdwseavnigppinnAGDNAISGMAPDGRT 295
Cdd:COG0823 28 NSPGIDTSPAWSPDGRRIAFT----------SDR-------------------------------GGGPQIYVVDADGGE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 296 AYLInvyrpdggmsfgisksirTKAGwsqpvecriANNYNLHeknqlefcVSPDGRAIILAvqrKDTRGNRDLYVslQKP 375
Cdd:COG0823 67 PRRL------------------TFGG---------GYNASPS--------WSPDGKRLAFV---SRSDGRFDIYV--LDL 106
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517451762 376 DNSWTEPVSLGnvintaefESSPFLAADSRTLYFTSAGHagyGNGDIFV------SRRLDDSW 432
Cdd:COG0823 107 DGGAPRRLTDG--------PGSPSWSPDGRRIVFSSDRG---GRPDLYVvdldgrKRRLTPAS 158
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
385-424 |
1.43e-03 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 36.73 E-value: 1.43e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 517451762 385 LGNVINTAEFESSPFLAADSRTLYFTSAGHagyGNGDIFV 424
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRD---GKPDIYV 37
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| OmpA |
COG2885 |
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
411-695 |
3.29e-40 |
|
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 149.55 E-value: 3.29e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 411 SAGHAGYGNGDIFVSRRLDDSWGNWSEPENLGPSINTDEWDGYFTIPASGDYAYLSSRAGSLGEDDIFRLKLYPAIKPDP 490
Cdd:COG2885 9 SALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 491 VAIISGQVLDSKSKKPIASEVISEILGDSTDVSTVDYNPETGGFTMILPTQKAYTLKAKKEGYFTTSEVLDLSKDKRFRD 570
Cdd:COG2885 89 LLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 571 IRRTLLLVKIEPGQKITMREVLFQQSQYELEPGANAELDQVVAMLDKYPTMELLVEGHTDNQGEWDLNMKLSEDRVRVVK 650
Cdd:COG2885 169 AAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVK 248
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 517451762 651 EYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTILK 695
Cdd:COG2885 249 DYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLK 293
|
|
| OmpA_C-like |
cd07185 |
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
591-693 |
1.33e-36 |
|
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 132.68 E-value: 1.33e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 591 VLFQQSQYELEPGANAELDQVVAMLDKYPTMELLVEGHTDNQGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWGP 670
Cdd:cd07185 4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83
|
90 100
....*....|....*....|...
gi 517451762 671 SKPVASNTNEEKRKLNRRVEFTI 693
Cdd:cd07185 84 SRPIASNDTEEGRAKNRRVEIVI 106
|
|
| MotB |
COG1360 |
Flagellar motor protein MotB [Cell motility]; |
569-695 |
2.24e-24 |
|
Flagellar motor protein MotB [Cell motility];
Pssm-ID: 440971 [Multi-domain] Cd Length: 174 Bit Score: 100.30 E-value: 2.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 569 RDIRRTLLLVKIEP-GQKITMRE-VLFQQSQYELEPGANAELDQVVAMLDKYPtMELLVEGHTDNQ----GEWDLNMKLS 642
Cdd:COG1360 37 ENLLSGQVEVRITEeGLVIEIQDrVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVpistARFPSNWELS 115
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 517451762 643 EDRVRVVKEYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTILK 695
Cdd:COG1360 116 AARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
|
|
| PRK10510 |
PRK10510 |
OmpA family lipoprotein; |
591-696 |
6.45e-21 |
|
OmpA family lipoprotein;
Pssm-ID: 182507 [Multi-domain] Cd Length: 219 Bit Score: 91.86 E-value: 6.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 591 VLFQQSQYELEP-GANAeLDQVVAMLDKYPTMELLVEGHTDNQGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWG 669
Cdd:PRK10510 114 VTFDSSSATLKPaGANT-LTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMG 192
|
90 100
....*....|....*....|....*..
gi 517451762 670 PSKPVASNTNEEKRKLNRRVEFTILKL 696
Cdd:PRK10510 193 PANPIASNSTAEGKAQNRRVEITLSPL 219
|
|
| OmpA |
pfam00691 |
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
593-686 |
9.35e-16 |
|
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.
Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 73.16 E-value: 9.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 593 FQQSQYELEPGANAELDQVVAMLDKYPT-MELLVEGHTDNQGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWGPS 671
Cdd:pfam00691 1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80
|
90
....*....|....*
gi 517451762 672 KPVASNTNEEKRKLN 686
Cdd:pfam00691 81 KPITDNKTPEGRARN 95
|
|
| type_VI_ompA |
TIGR03350 |
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ... |
570-693 |
2.16e-14 |
|
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274533 [Multi-domain] Cd Length: 137 Bit Score: 70.41 E-value: 2.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 570 DIRRTLLLVKIEPGQ-KITMR-EVLFQQSQYELEPGANAELDQVVAMLDKYPTmELLVEGHTDNQ----GEWDLNMKLSE 643
Cdd:TIGR03350 9 EIAAGLLTVDEDGDRsVVRLRgDELFASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNVpirtARFPSNWHLSE 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 517451762 644 DRVRVVKEYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTI 693
Cdd:TIGR03350 88 ARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
|
|
| PRK06925 |
PRK06925 |
flagellar motor protein MotB; |
591-695 |
1.23e-12 |
|
flagellar motor protein MotB;
Pssm-ID: 235887 [Multi-domain] Cd Length: 230 Bit Score: 67.87 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 591 VLFQQSQYELEPGANAELDQVVAMLDKYPTMeLLVEGHTDNQG----EWDLNMKLSEDRVRVVKEYMMAK-GVTESRIQT 665
Cdd:PRK06925 120 VLFETGEADILKQAEPFLHKIGVLLSTIPND-IKVEGHTDSRPistyRYPSNWELSAARASSVIRYFTSKeKLDSSRFIA 198
|
90 100 110
....*....|....*....|....*....|
gi 517451762 666 KAWGPSKPVASNTNEEKRKLNRRVEFTILK 695
Cdd:PRK06925 199 VGYADTKPVVPNTTEENMQENRRVEIVISD 228
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
590-696 |
2.33e-11 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 65.76 E-value: 2.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 590 EVLFQQSQYELEPGANAELDQVVAML----DKYPTmE----LLVEGHTDNQ-----GEWDLNMKLSEDR-VRVVKeYMMA 655
Cdd:PRK09039 225 EVLFPTGSAELNPEGQAEIAKLAAALielaKEIPP-EinwvLRVDGHTDNVplsgtGRFRDNWELSSARaISVVK-FLIA 302
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 517451762 656 KGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEftiLKL 696
Cdd:PRK09039 303 LGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIE---LKL 340
|
|
| PRK09967 |
PRK09967 |
OmpA family protein; |
591-693 |
4.90e-11 |
|
OmpA family protein;
Pssm-ID: 182172 [Multi-domain] Cd Length: 160 Bit Score: 61.53 E-value: 4.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 591 VLFQQSQYELEPGANAELDQVVAMLDKYPTMELLVEGHTDNQGEWDLNMKLSEDRVRVVKE-YMMAKGVTESRIQTKAWG 669
Cdd:PRK09967 54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADaWAMGGQIPRSNLTTQGLG 133
|
90 100
....*....|....*....|....
gi 517451762 670 PSKPVASNTNEEKRKLNRRVEFTI 693
Cdd:PRK09967 134 KKYPIASNKTAQGRAENRRVAVVI 157
|
|
| PRK10802 |
PRK10802 |
peptidoglycan-associated lipoprotein Pal; |
591-688 |
1.08e-10 |
|
peptidoglycan-associated lipoprotein Pal;
Pssm-ID: 182744 [Multi-domain] Cd Length: 173 Bit Score: 61.04 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 591 VLFQQSQYELEPGANAELDQVVAMLDKYPTMELLVEGHTDNQGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWGP 670
Cdd:PRK10802 71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGK 150
|
90
....*....|....*...
gi 517451762 671 SKPVASNTNEEKRKLNRR 688
Cdd:PRK10802 151 EKPAVLGHDEAAYAKNRR 168
|
|
| PRK07033 |
PRK07033 |
DotU family type VI secretion system protein; |
570-694 |
3.61e-10 |
|
DotU family type VI secretion system protein;
Pssm-ID: 180801 [Multi-domain] Cd Length: 427 Bit Score: 62.76 E-value: 3.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 570 DIRRTLLLVKIEPGQK-ITMR-EVLFQQSQYELEPGANAELDQVVAMLDKYPTmELLVEGHTDNQ----GEWDLNMKLSE 643
Cdd:PRK07033 293 EIRAGLVAVRDEADRSvVTLRgDGLFASASTSVRDRYQPVLARVADALNQVKG-NVLVTGYSDNVpirtARFPSNWELSQ 371
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 517451762 644 DRVRVVKEYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTIL 694
Cdd:PRK07033 372 ARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLL 422
|
|
| motB |
PRK08944 |
flagellar motor protein MotB; Reviewed |
583-694 |
4.04e-10 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 236356 [Multi-domain] Cd Length: 302 Bit Score: 61.56 E-value: 4.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 583 GQKITMR---EVLFQQSQYELEPGANAELDQVVAMLDKYPTmELLVEGHTDNQG--------EWDLNMKLSedrVRVVKE 651
Cdd:PRK08944 170 GQQIIIRireKGSFPSGSAFLQPKFKPVVRKIGELLKDVPG-IITVSGHTDNVPisselyrsNWDLSSARA---VAVAHE 245
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 517451762 652 YMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTIL 694
Cdd:PRK08944 246 LLKVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIIIE 288
|
|
| PRK09038 |
PRK09038 |
flagellar motor protein MotD; Reviewed |
561-695 |
2.03e-09 |
|
flagellar motor protein MotD; Reviewed
Pssm-ID: 181618 [Multi-domain] Cd Length: 281 Bit Score: 59.25 E-value: 2.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 561 DLSKDKRFRdIRRTLLLVKIEPGQKItmrevLFQQSQYELEPGANAELDQVVAMLDKYPTmELLVEGHTDNQ----GEWD 636
Cdd:PRK09038 111 PLIESGQVT-VRRNELWIEIEINSSL-----LFGSGDAMLSDQAFAILEKVAEVLKPAPN-PIHVEGFTDNVpiatAQFP 183
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 517451762 637 LNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTILK 695
Cdd:PRK09038 184 SNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVILR 242
|
|
| PRK10808 |
PRK10808 |
outer membrane protein A; Reviewed |
590-690 |
3.28e-09 |
|
outer membrane protein A; Reviewed
Pssm-ID: 236764 [Multi-domain] Cd Length: 351 Bit Score: 59.32 E-value: 3.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 590 EVLFQQSQYELEPGANAELDQVVAMLDKY-PTM-ELLVEGHTDNQGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKA 667
Cdd:PRK10808 225 DVLFNFNKATLKPEGQQALDQLYSQLSNLdPKDgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARG 304
|
90 100 110
....*....|....*....|....*....|..
gi 517451762 668 WGPSKPVASNTNEEKRKL---------NRRVE 690
Cdd:PRK10808 305 MGKSNPVTGNTCDNVKPRaalidclapDRRVE 336
|
|
| motB |
PRK06667 |
flagellar motor protein MotB; Validated |
625-694 |
4.11e-09 |
|
flagellar motor protein MotB; Validated
Pssm-ID: 180652 [Multi-domain] Cd Length: 252 Bit Score: 57.88 E-value: 4.11e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517451762 625 VEGHTDN-----QGEWDLNMKLSEDRVRVVKEYMMAKGVT-ESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTIL 694
Cdd:PRK06667 164 IEGHTDNvdvnpEGPWKSNWELSGARAVNMLEYILNYGDQsESWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVIL 239
|
|
| PRK09040 |
PRK09040 |
hypothetical protein; Provisional |
591-690 |
4.99e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 181620 [Multi-domain] Cd Length: 214 Bit Score: 56.95 E-value: 4.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 591 VLFQQSQYELEPGANAELDQVVAMLDKYPTME---LLVEGHTDNQ------GEWDLNMKLSEDRVRVVKEYMMAKGVTES 661
Cdd:PRK09040 90 VLFALNSDQLQPEGRELLKSLAGPLAAYLRARdeiLMVSGFTDDQpvragnRRFADNWELSAQRALTVTRALIDAGVPAS 169
|
90 100
....*....|....*....|....*....
gi 517451762 662 RIQTKAWGPSKPVASNTNEEKRKLNRRVE 690
Cdd:PRK09040 170 SVFAAAFGSEQPVASNADDEGRAKNRRVE 198
|
|
| PRK08126 |
PRK08126 |
hypothetical protein; Provisional |
624-693 |
5.89e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 236157 [Multi-domain] Cd Length: 432 Bit Score: 58.94 E-value: 5.89e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517451762 624 LVEGHTDNQ----GEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVEFTI 693
Cdd:PRK08126 357 TVTGHTDNQpirsAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITV 430
|
|
| motB |
PRK07734 |
flagellar motor protein MotB; Reviewed |
581-694 |
1.88e-06 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 236080 [Multi-domain] Cd Length: 259 Bit Score: 49.74 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 581 EPGQKITMRE-VLFQQSQYELEPGANAELDQVVAMLDKYPTMELLVEGHTDN--------QGEWDLN-------MKLSED 644
Cdd:PRK07734 133 EEGLLITILDnILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDNvpianaqfASNWELSvmravnfMQVLLE 212
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 517451762 645 RVRVVKEYMMAKGvtesriqtkaWGPSKPVASNTNEEKRKLNRRVEFTIL 694
Cdd:PRK07734 213 NKELDPEKFSAKG----------YGEYKPIASNDTAEGRAKNRRVEVLIL 252
|
|
| motB |
PRK08457 |
flagellar motor protein MotB; Reviewed |
610-694 |
2.63e-05 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 181435 [Multi-domain] Cd Length: 257 Bit Score: 46.25 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 610 QVVAMLDKYPTMEllVEGHTDN----QGEWDLNMKLSEDRVRVVKEYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKL 685
Cdd:PRK08457 147 KIITKLPKQVKIN--VRGYTDNsplnKSRYKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLK 224
|
....*....
gi 517451762 686 NRRVEFTIL 694
Cdd:PRK08457 225 NNRVEIFFK 233
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
216-432 |
1.11e-03 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 40.04 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 216 NSAGQEVAPVISPDGRTLYFTrnfnkanigaSDRqdvwystrqsvangsesdwseavnigppinnAGDNAISGMAPDGRT 295
Cdd:COG0823 28 NSPGIDTSPAWSPDGRRIAFT----------SDR-------------------------------GGGPQIYVVDADGGE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 296 AYLInvyrpdggmsfgisksirTKAGwsqpvecriANNYNLHeknqlefcVSPDGRAIILAvqrKDTRGNRDLYVslQKP 375
Cdd:COG0823 67 PRRL------------------TFGG---------GYNASPS--------WSPDGKRLAFV---SRSDGRFDIYV--LDL 106
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517451762 376 DNSWTEPVSLGnvintaefESSPFLAADSRTLYFTSAGHagyGNGDIFV------SRRLDDSW 432
Cdd:COG0823 107 DGGAPRRLTDG--------PGSPSWSPDGRRIVFSSDRG---GRPDLYVvdldgrKRRLTPAS 158
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
385-424 |
1.43e-03 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 36.73 E-value: 1.43e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 517451762 385 LGNVINTAEFESSPFLAADSRTLYFTSAGHagyGNGDIFV 424
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRD---GKPDIYV 37
|
|
| PRK07034 |
PRK07034 |
hypothetical protein; Provisional |
622-690 |
2.15e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 168775 [Multi-domain] Cd Length: 536 Bit Score: 41.31 E-value: 2.15e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517451762 622 ELLVEGHTDNQ----GEWDLNMKLSEDRVRVV----KEYMMAKGVTESRIQTKAWGPSKPVASNTNEEKRKLNRRVE 690
Cdd:PRK07034 428 DIEVIGHTDNKpfrsTSGNNNLKLSAARASVVadklRESTQINETHQREISAIGRGESDPLADNATEEGRKRNRRVD 504
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
211-238 |
2.54e-03 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 35.96 E-value: 2.54e-03
10 20
....*....|....*....|....*...
gi 517451762 211 LGKTVNSAGQEVAPVISPDGRTLYFTRN 238
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSD 28
|
|
| PRK06742 |
PRK06742 |
flagellar motor protein MotS; Reviewed |
586-689 |
4.16e-03 |
|
flagellar motor protein MotS; Reviewed
Pssm-ID: 102525 [Multi-domain] Cd Length: 225 Bit Score: 39.28 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 586 ITMREVLFQQSQYELEPGANAELDQVVAMLDKYPTmELLVEGHTDNQ----GEWDLNMKLSEDRV-RVVKEYMMAKGVTE 660
Cdd:PRK06742 112 VIVDNLIFDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSRpihnDKFPSNWELSSARAaNMIHHLIEVYNVDD 190
|
90 100
....*....|....*....|....*....
gi 517451762 661 SRIQTKAWGPSKPVASNTNEEKRKLNRRV 689
Cdd:PRK06742 191 KRLAAVGYADTKPVVPNDSPQNWEKNRRV 219
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
494-575 |
5.21e-03 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 36.42 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517451762 494 ISGQVLDSKSKKPI--ASEVISEI-LGDSTDvstvdynpETGGFTMILPTQKAYTLKAKKEGYFTTSEVLDLSKDKRfRD 570
Cdd:pfam13715 1 ISGTVVDENTGEPLpgATVYVKGTtKGTVTD--------ADGNFELKNLPAGTYTLVVSFVGYKTQEKKVTVSNDNT-LD 71
|
....*
gi 517451762 571 IRRTL 575
Cdd:pfam13715 72 VNFLL 76
|
|
| |
