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Conserved domains on  [gi|517538232|ref|WP_018708440|]
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F0F1 ATP synthase subunit epsilon [Siminovitchia fordii]

Protein Classification

FoF1 ATP synthase subunit epsilon( domain architecture ID 11479057)

FoF1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Gene Ontology:  GO:0045261|GO:0046933|GO:0005524|GO:0005886
SCOP:  3000182|3000785

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-132 5.84e-51

F0F1 ATP synthase subunit epsilon; Validated


:

Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 158.00  E-value: 5.84e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLK-NGSKTEYVAVSGGFLEVRPEEVTILA 79
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKkDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 517538232  80 QAAERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDVSQH 132
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEK 133
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-132 5.84e-51

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 158.00  E-value: 5.84e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLK-NGSKTEYVAVSGGFLEVRPEEVTILA 79
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKkDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 517538232  80 QAAERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDVSQH 132
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEK 133
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 4-133 1.89e-46

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 146.49  E-value: 1.89e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGS-KTEYVAVSGGFLEVRPEEVTILAQAA 82
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDgEEEYFAVSGGFLEVQPNKVTILADTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 517538232  83 ERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDVSQHR 133
Cdd:COG0355   81 ERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAEKL 131
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 4-125 1.59e-40

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 131.09  E-value: 1.59e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLK-NGSKTEYVAVSGGFLEVRPEEVTILAQAA 82
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRdEDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 517538232  83 ERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMN 125
Cdd:cd12152   81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERALA 123
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 3-129 3.63e-39

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 128.14  E-value: 3.63e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232    3 TLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRL-KNGSKTEYVAVSGGFLEVRPEEVTILAQA 81
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIrKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 517538232   82 AERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDV 129
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEA 128
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 4-82 1.34e-34

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 114.84  E-value: 1.34e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232    4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKN-GSKTEYVAVSGGFLEVRPEEVTILAQAA 82
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTeDGEEEYIAVSGGFLEVQPNKVTILADSA 80
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-132 5.84e-51

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 158.00  E-value: 5.84e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLK-NGSKTEYVAVSGGFLEVRPEEVTILA 79
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKkDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 517538232  80 QAAERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDVSQH 132
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEK 133
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 4-133 1.89e-46

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 146.49  E-value: 1.89e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGS-KTEYVAVSGGFLEVRPEEVTILAQAA 82
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDgEEEYFAVSGGFLEVQPNKVTILADTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 517538232  83 ERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDVSQHR 133
Cdd:COG0355   81 ERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAEKL 131
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-131 1.31e-41

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 134.31  E-value: 1.31e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGSKTEYVAVSGGFLEVRPEEVTILAQ 80
Cdd:PRK13446   2 AKKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVTVLAE 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 517538232  81 AAERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDVSQ 131
Cdd:PRK13446  82 TAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQVAG 132
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 4-125 1.59e-40

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 131.09  E-value: 1.59e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLK-NGSKTEYVAVSGGFLEVRPEEVTILAQAA 82
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRdEDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 517538232  83 ERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMN 125
Cdd:cd12152   81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERALA 123
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 3-129 3.63e-39

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 128.14  E-value: 3.63e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232    3 TLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRL-KNGSKTEYVAVSGGFLEVRPEEVTILAQA 81
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIrKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 517538232   82 AERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDV 129
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEA 128
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 4-82 1.34e-34

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 114.84  E-value: 1.34e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232    4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKN-GSKTEYVAVSGGFLEVRPEEVTILAQAA 82
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTeDGEEEYIAVSGGFLEVQPNKVTILADSA 80
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 1-127 1.00e-27

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 99.07  E-value: 1.00e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRL--KNGSKtEYVAVSGGFLEVRPEEVTIL 78
Cdd:PRK13450   1 ANNIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIidENGEK-KKIFTSSGVLKVENNEVYIL 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 517538232  79 AQAAERAESIDIARAQAAQARAEQLLeSKRDDIDFKRAELAMKRAMNRI 127
Cdd:PRK13450  80 CDASEWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIARI 127
atpE CHL00063
ATP synthase CF1 epsilon subunit
 3-129 9.86e-26

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 94.16  E-value: 9.86e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   3 TLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGSKTEYVAVSGGFLEVRPEEVTILAQAA 82
Cdd:CHL00063   2 TLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVNDA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 517538232  83 ERAESIDIARAQAAQARAEQLL---ESKRDDIDfkrAELAMKRAMNRIDV 129
Cdd:CHL00063  82 EKGSDIDPQEAQQTLEIAEANLekaEGKKQKIE---ANLALKRARARVEA 128
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 4-133 1.78e-25

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 93.52  E-value: 1.78e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVR-LKNGSKTEYvAVSGGFLEVRPEEVTILAQAA 82
Cdd:PRK14735   3 IHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDiVKNGVRTPF-AISGGFMEVLPHRVTILADTA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 517538232  83 ERAESIDIARAQAAQARAEQLLESKRDDIDFKRAELAMKRAMNRIDVSQHR 133
Cdd:PRK14735  82 ERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLRVAQLH 132
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 2-117 1.97e-18

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 75.30  E-value: 1.97e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   2 NTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGSKTEYVAVSGGFLEVRPEEVTILAQA 81
Cdd:PRK13444   4 KKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQISILTDH 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 517538232  82 AERAESIDIARAQAAQARAEQLLESKRDDIDFKRAE 117
Cdd:PRK13444  84 GALKEDIDHEHEKKLLAEAEKLPPSDSKNLLLQKTK 119
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 4-89 7.93e-17

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 70.20  E-value: 7.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGSKTEYVAVSGGFLEVRPEEVTILAQAAE 83
Cdd:PRK13451   1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEAG 80


                 ....*.
gi 517538232  84 RAESID 89
Cdd:PRK13451  81 REEEIS 86
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-83 1.15e-16

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 69.66  E-value: 1.15e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRL-KNGSKTEYVAVSGGFLEVRPEEVTILA 79
Cdd:PRK13442   3 GATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVvTPGGERISAAVDGGFISFDSNKLTVLA 82


                 ....
gi 517538232  80 QAAE 83
Cdd:PRK13442  83 ERAE 86
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 4-127 2.72e-16

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 70.16  E-value: 2.72e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   4 LKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGSKTEYVAVSGGFLEVRPEEVTILAQAAE 83
Cdd:PRK13452   6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVDDME 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 517538232  84 RAESIDIARAQAAQARAEQLLES-KRDDIDFKRAELAMKRAMNRI 127
Cdd:PRK13452  86 RAENLNQAEAEKARARAKEVLKNpDASKLDIEAANKRLKEADARL 130
atpC PRK13449
ATP synthase F1 subunit epsilon;
1-85 4.84e-15

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 65.56  E-value: 4.84e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKN--GSKTEYVAVSGGFLEVRPEEVTIL 78
Cdd:PRK13449   1 MAKLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSsdGAAPEVFHVQGGFAEVNEKGLTIL 80


                 ....*..
gi 517538232  79 AQAAERA 85
Cdd:PRK13449  81 AEHAVEA 87
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 1-128 8.01e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 60.94  E-value: 8.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGSKTEYVAVSGGFLEVRPEEVTILAQ 80
Cdd:PRK13448   1 MATFHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLTVLAD 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 517538232  81 AAERAESIDIARAQAAQARAEQLLESKRDDidfkraELamKRAMNRID 128
Cdd:PRK13448  81 VATSVADLDLAQFAATIAEMEAQLAGKVGD------EL--DRAIERLD 120
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 1-89 9.03e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 58.27  E-value: 9.03e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MNTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGSKT-EYVAVSGGFLEVRPEEVTILa 79
Cdd:PRK14736   1 MATFHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNgKRIYVRGGFAEIGPTSVTVL- 79

                         90
                 ....*....|
gi 517538232  80 qaAERAESID 89
Cdd:PRK14736  80 --AERAAPVE 87
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 1-82 1.17e-07

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 46.79  E-value: 1.17e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   1 MN-TLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRL----KNGSKTEYVaVSGGFLEVRPEEV 75
Cdd:PRK01474   1 MNeTILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVyiddMHKSENTYL-ISGGVTEVTGNYI 79


                 ....*..
gi 517538232  76 TILAQAA 82
Cdd:PRK01474  80 NIATETA 86
PRK13447 PRK13447
F0F1 ATP synthase subunit epsilon; Provisional
 4-70 1.22e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184057 [Multi-domain]  Cd Length: 136  Bit Score: 44.61  E-value: 1.22e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   4 LKVSIVTPDGPVYNsEVEMVSTKAE--TGELGILPGHIPLVAPLQIGAVRLKNGSKTE-YVAVSGGFLEV 70
Cdd:PRK13447   1 LRLTIATPLAVVVD-ELDIVSLRAEdaSGGFGILPGHADFLTVLRASVVRWRRADGAThYCAVRGGVLRV 69
ATP-synt_DE pfam00401
ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). ...
 79-129 4.02e-06

ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 459802  Cd Length: 45  Bit Score: 41.21  E-value: 4.02e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 517538232   79 AQAA-ERAEsidiaraqaaqaraEQLLESKRDDIDFKRAELAMKRAMNRIDV 129
Cdd:pfam00401   8 AEEAkERAE--------------ERLAQAKQDDIDYARAQAALARALARLQA 45
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 2-82 9.04e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 42.22  E-value: 9.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517538232   2 NTLKVSIVTPDGPVYNSEVEMVSTKAETGELGILPGHIPLVAPLQIGAVRLKNGSKTEYVAVSGGFLEVRPEEVTILAQA 81
Cdd:PRK13443   3 GTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATSISVLAEK 82


                 .
gi 517538232  82 A 82
Cdd:PRK13443  83 A 83
PRK06228 PRK06228
F0F1 ATP synthase subunit epsilon; Validated
 27-82 3.96e-03

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 235750 [Multi-domain]  Cd Length: 131  Bit Score: 34.91  E-value: 3.96e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 517538232  27 AET--GELGILPGHIPLVAPLQIGAVRLKNGSKTE-YVAVSGGFLEVRPEEVTILAQAA 82
Cdd:PRK06228  25 AETreGSFGLLPHRLDCVAALVPGILVYETEAEGEvYVAVDEGILVKTGPDVLVSVRNA 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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