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Conserved domains on  [gi|517579746|ref|WP_018749954|]
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flagellar motor protein [Paenibacillus sanguinis]

Protein Classification

motility protein A( domain architecture ID 10003437)

motility protein A (MotA) is a flagellar motor protein which is energized by a proton (H(+)) motive force

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MotA COG1291
Flagellar motor component MotA [Cell motility];
3-250 6.20e-108

Flagellar motor component MotA [Cell motility];


:

Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 313.17  E-value: 6.20e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   3 ITIIIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQNLVEDIT 82
Cdd:COG1291    1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYEELIELLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  83 AMSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIGTV 162
Cdd:COG1291   81 ELAEKARKEGLLALESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGTV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 163 MGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRRKLE 242
Cdd:COG1291  161 LGLIQMLGNLDDPSALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKLR 240


                 ....*...
gi 517579746 243 AYSPDVDR 250
Cdd:COG1291  241 SFLPPSER 248
 
Name Accession Description Interval E-value
MotA COG1291
Flagellar motor component MotA [Cell motility];
3-250 6.20e-108

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 313.17  E-value: 6.20e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   3 ITIIIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQNLVEDIT 82
Cdd:COG1291    1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYEELIELLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  83 AMSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIGTV 162
Cdd:COG1291   81 ELAEKARKEGLLALESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGTV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 163 MGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRRKLE 242
Cdd:COG1291  161 LGLIQMLGNLDDPSALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKLR 240


                 ....*...
gi 517579746 243 AYSPDVDR 250
Cdd:COG1291  241 SFLPPSER 248
motC PRK09109
flagellar motor protein; Reviewed
 1-244 1.15e-92

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 273.74  E-value: 1.15e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   1 MDITIIIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQNLVED 80
Cdd:PRK09109   1 MDVLSLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLEGGIDR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  81 ITAMSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIG 160
Cdd:PRK09109  81 IVEWSNTARKEGLLGLEDVADREPDPFARKGLQLLVDGAEPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 161 TVMGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRRK 240
Cdd:PRK09109 161 AVMGLIHVMENLADPSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIELK 240


                 ....
gi 517579746 241 LEAY 244
Cdd:PRK09109 241 LQGY 244
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 100-215 9.96e-35

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 121.43  E-value: 9.96e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  100 AETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIGTVMGLIHVLGSL----TEP 175
Cdd:pfam01618   2 ANSPEDRFLKKGLQLVVDGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNLgdagPGL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 517579746  176 TALGPAIALAFTATLYGVASAnLLFLPIASKIKARSEEEL 215
Cdd:pfam01618  82 SALAPGIAEALIATAYGLFVA-IPALPFYNKLKRRSEREV 120
 
Name Accession Description Interval E-value
MotA COG1291
Flagellar motor component MotA [Cell motility];
3-250 6.20e-108

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 313.17  E-value: 6.20e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   3 ITIIIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQNLVEDIT 82
Cdd:COG1291    1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYEELIELLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  83 AMSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIGTV 162
Cdd:COG1291   81 ELAEKARKEGLLALESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGTV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 163 MGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRRKLE 242
Cdd:COG1291  161 LGLIQMLGNLDDPSALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKLR 240


                 ....*...
gi 517579746 243 AYSPDVDR 250
Cdd:COG1291  241 SFLPPSER 248
motC PRK09109
flagellar motor protein; Reviewed
 1-244 1.15e-92

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 273.74  E-value: 1.15e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   1 MDITIIIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQNLVED 80
Cdd:PRK09109   1 MDVLSLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLEGGIDR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  81 ITAMSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIG 160
Cdd:PRK09109  81 IVEWSNTARKEGLLGLEDVADREPDPFARKGLQLLVDGAEPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 161 TVMGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRRK 240
Cdd:PRK09109 161 AVMGLIHVMENLADPSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIELK 240


                 ....
gi 517579746 241 LEAY 244
Cdd:PRK09109 241 LQGY 244
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 1-251 1.72e-83

flagellar motor protein MotA; Validated


Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 251.03  E-value: 1.72e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   1 MDITIIIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQN-LVE 79
Cdd:PRK08124   1 MDITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKKVPKLFKVLFKEKKDPSKEeLIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  80 DITAMSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGII 159
Cdd:PRK08124  81 QFVEWASESRREGLLALEAQLDEIDDPFLKRGLKMVIDGQSPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 160 GTVMGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRR 239
Cdd:PRK08124 161 GAVIGLIAALGNLSDIEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYIIIEGVLAIQEGNAPRVIEE 240

                        250
                 ....*....|..
gi 517579746 240 KLEAYSPDVDRS 251
Cdd:PRK08124 241 KLLGYLSPKERK 252
PRK06926 PRK06926
flagellar motor protein MotP; Reviewed
 2-257 5.59e-64

flagellar motor protein MotP; Reviewed


Pssm-ID: 180755 [Multi-domain]  Cd Length: 271  Bit Score: 201.87  E-value: 5.59e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   2 DITIIIGLVIGLVALVGGFLLEGGQVGGLF--QLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQNLVE 79
Cdd:PRK06926   5 DYLTPVGIFLGITIVVLGVISNSGLSGFLSfiDLTSILIVTGGLCAALFISFSPKDLKLAPRVLKQAFQSQEDDVEELVQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  80 DITAMSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGII 159
Cdd:PRK06926  85 TFVSLSEKARREGLLSLEAELEEVKDPFIKKGLLLAIDGWEPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYAPAWGMI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 160 GTVMGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRR 239
Cdd:PRK06926 165 GTLVGLVLMLKNLNDPSTLGPNMAIALLTTLYGTLLANLVFLPIAAKLEEKTEEEVFVKQVIIEGVIGVQSGQNPRILEE 244

                        250
                 ....*....|....*...
gi 517579746 240 KLEAYSPDVDRSLPDPNS 257
Cdd:PRK06926 245 KLSVFSSKEDWTKEEEDR 262
PRK08990 PRK08990
flagellar motor protein PomA; Reviewed
 1-250 4.28e-56

flagellar motor protein PomA; Reviewed


Pssm-ID: 181604 [Multi-domain]  Cd Length: 254  Bit Score: 181.00  E-value: 4.28e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   1 MDITIIIGLvIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQNLVED 80
Cdd:PRK08990   1 MDLATLIGL-IGAFAFVIMAMVLGGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQFFGAVKIAGKAFMFKIDKPEDLIEQ 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  81 ITAMSSISRREGVLALEKtAEThQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIG 160
Cdd:PRK08990  80 IVEMADAARKGGFLALEE-AEI-SNSFMQKGVDLLVDGHDGDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAMGMIG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 161 TVMGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRRK 240
Cdd:PRK08990 158 TLIGLVAMLSNMDDPKSIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQNPRVIEGF 237

                        250
                 ....*....|
gi 517579746 241 LEAYSPDVDR 250
Cdd:PRK08990 238 LKNYLAEKKR 247
PRK08456 PRK08456
flagellar motor protein MotA; Validated
 1-244 4.07e-51

flagellar motor protein MotA; Validated


Pssm-ID: 181434 [Multi-domain]  Cd Length: 257  Bit Score: 168.37  E-value: 4.07e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   1 MDITIIIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISfplaklrTVPKALSLAF----IAKSNPDQN 76
Cdd:PRK08456   1 MDLSTILGMVLAVASISVGDILEGGNPLHVIHLSSFIIVVPTALFAAMTA-------THKKYVKAAYkelkIVFKNPGVN 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  77 LVEDITAM---SSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYA 153
Cdd:PRK08456  74 LNERIKQLvelATLARKDGVLALEGRVAQIEDEFLKNGLSMLVDGKDLEEIKESMEIQIEEMEEYYHGAAHYWITAGETC 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 154 PTMGIIGTVMGLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDH 233
Cdd:PRK08456 154 PTMGLVGAVMGLMLALQKLDNPAEMAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILEGILGIAEGAN 233

                        250
                 ....*....|.
gi 517579746 234 PLLVRRKLEAY 244
Cdd:PRK08456 234 PRDLEEKLLNY 244
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 100-215 9.96e-35

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 121.43  E-value: 9.96e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  100 AETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIGTVMGLIHVLGSL----TEP 175
Cdd:pfam01618   2 ANSPEDRFLKKGLQLVVDGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNLgdagPGL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 517579746  176 TALGPAIALAFTATLYGVASAnLLFLPIASKIKARSEEEL 215
Cdd:pfam01618  82 SALAPGIAEALIATAYGLFVA-IPALPFYNKLKRRSEREV 120
PRK06743 PRK06743
flagellar motor protein MotP; Reviewed
 7-244 1.37e-30

flagellar motor protein MotP; Reviewed


Pssm-ID: 136027  Cd Length: 254  Bit Score: 114.69  E-value: 1.37e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   7 IGLVIGLVALVGGFLLEGGQVGGL---FQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPDQNLVEDITA 83
Cdd:PRK06743   1 VGIIVGFAIVIAAIMLGGGGIKAFknfLDVSSILIVIGGTTATIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFVD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  84 MSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHEGYAKIFESAGGYAPTMGIIGTVM 163
Cdd:PRK06743  81 FSKKSKKHGLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMIGTLI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 164 GLIHVLGSLTEPTALGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELILEGILSIQNGDHPLLVRRKLEA 243
Cdd:PRK06743 161 GLIIMLQNLQDTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFVIEAISELYRGQIPSKLKLKLDT 240


                 .
gi 517579746 244 Y 244
Cdd:PRK06743 241 Y 241
PRK09110 PRK09110
flagellar motor stator protein MotA;
5-236 1.42e-22

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 94.08  E-value: 1.42e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   5 IIIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFiAKSNPDQNLVEDITAM 84
Cdd:PRK09110   3 IIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLF-KGPKYKKADYMDLLAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  85 ----SSISRREGVLALEKTAETHQ-------------DPFLREGI----QLIVDGT-DHSAVRQMLELEIDAVAKKHEGY 142
Cdd:PRK09110  82 lyelLRKARQEGMMALEAHIENPEespifakypkilkDHHLVDFIcdylRLMISGNmNPHEIEALMDEEIETHHHEAEVP 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 143 AKIFESAGGYAPTMGIIGTVMGLIHVLGSLTEPTA-LGPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRMELI 221
Cdd:PRK09110 162 AHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAvLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQCI 241

                        250
                 ....*....|....*
gi 517579746 222 LEGILSIQNGDHPLL 236
Cdd:PRK09110 242 KVTLLASLNGYAPQI 256
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 6-67 1.42e-08

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 51.24  E-value: 1.42e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517579746    6 IIGLVIGLVALVGGFLLEGGQVGGLFQLTAA-LIVFGGTFAAVLISFPLAKLRTVPKALSLAF 67
Cdd:pfam20560   1 IIGIVVVLGCVFGGYALAGGHLGVLWQLPFElLIIGGAAIGAFIIANPMKVLKATLKALPKAF 63
TolQ COG0811
Biopolymer transport protein ExbB/TolQ [Intracellular trafficking, secretion, and vesicular ...
 61-228 1.72e-08

Biopolymer transport protein ExbB/TolQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440573  Cd Length: 199  Bit Score: 53.31  E-value: 1.72e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  61 KALSLAFIAKSNpdQNLVEDITAMSSISRREGVLALEKTAETHQDPFLREGIQLIVDGTDHSAVRQMLELEIDAVAKKHE 140
Cdd:COG0811   30 RLLFLRRARRRA--RKFLRAFLELWSAGDLDEAIELCEARNSPLARILAAGLRELKSGGGREAIERALEEAASRELPRLE 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746 141 GYAKIFESAGGYAPTMGIIGTVMGLIHVLGSLTE-----PTALGPAIALAFTATLYGVASANLLFLpIASKIKARSEEEL 215
Cdd:COG0811  108 RGLSFLATIGSIAPLLGLLGTVWGMINAFQAIAAagqadLAVVAGGISEALITTAAGLAVAIPAVI-AYNYFSRRIDRLV 186

                        170
                 ....*....|...
gi 517579746 216 DRMELILEGILSI 228
Cdd:COG0811  187 AELEEFAEELLAL 199
PRK12482 PRK12482
flagellar motor stator protein MotA;
6-219 4.01e-07

flagellar motor stator protein MotA;


Pssm-ID: 171532 [Multi-domain]  Cd Length: 287  Bit Score: 50.13  E-value: 4.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746   6 IIGLVIGLVALVGGFLLEGGQVGGLFQLTAALIVFGGTFAAVLISFPLAKLRTVPKALSLAFIAKSNPD---QNLVEDIT 82
Cdd:PRK12482   4 LFGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKEMWHQIKGVIRRKEYGVefqRQLLLLLY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517579746  83 AMSSISRREGVLALEKTAETHQD-------PFLREGIQL---IVDG--------TDHSAVRQMLELEIDAVAKKHEGYAK 144
Cdd:PRK12482  84 ELLEMVQEGGLKRLDQHIEIPEEsslfqkyPLILQQKRLitfISDNfrlmamgkINQHELEGILDQELDAVEEELLQPSR 163

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517579746 145 IFESAGGYAPTMGIIGTVMGLIHVLGSLTEPTAL-GPAIALAFTATLYGVASANLLFLPIASKIKARSEEELDRME 219
Cdd:PRK12482 164 SLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEiGLKVAAALVGTFLGVFICYCLMDPLANAMEQEIKKELSLLE 239
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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