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Conserved domains on  [gi|517703739|ref|WP_018873947|]
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Fic family protein [Thioalkalivibrio sp. ALJ16]

Protein Classification

Fic family protein( domain architecture ID 11459786)

Fic (Filamentation induced by cAMP) family protein similar to Shewanella oneidensis adenosine monophosphate-protein transferase SoFic, which mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins

Gene Ontology:  GO:0005524|GO:0000287|GO:0042803

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3177 COG3177
Fic family protein [Transcription];
22-363 2.07e-82

Fic family protein [Transcription];


:

Pssm-ID: 442410 [Multi-domain]  Cd Length: 316  Bit Score: 253.84  E-value: 2.07e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739  22 PMLAAAAREQGRLLGRMQGLGfALREEASLRMLSEDIVDSGAIEGERLPLDQVRSSLARRLGlkAGGLVASGRDVDGMVE 101
Cdd:COG3177    2 PELLKLLAEADEALGRLDGLP-EELRELLRKLLIEEAYASSAIEGNTLTLDEVRSLLEGGLT--GGPPLRDEREVLNYVE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 102 LMLDATKAF-DRELTVDRLFDWHAALFPtGRSGMTRIPvARWRDDEEGPmdvvsgpvgreTVHFSAPPAERIPGEVDAFL 180
Cdd:COG3177   79 ALEYLLELLrGEPLTEELILELHRILLK-GLRGEDKEP-GEYRTGQVGI-----------GAVYVPPPPEEVPELMEELL 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 181 SWFKTPGPLDPLLVAGLAHLWFVTIHPFEDGNGRIARAIADMALARADGSAERFYSMSGQILRERSDYYAILERTqkQED 260
Cdd:COG3177  146 DWLNEEDELHPLIKAAIAHYQFETIHPFADGNGRTGRLLMNLLLLRAGLLSQPLLPLSRIIEEDRDEYYDALEAV--RET 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 261 LDITLWLEWFLGCLQRSLDSAQDALEHVLFKAQfwerfatEPLNARQIKVLNRLLDgfEGGMTSSRWARMAKCSQDTAQR 340
Cdd:COG3177  224 GDLTPWIEFFLEAILEAAEEALALLERLLELAR-------GRLNERQRKLLELLFE--NPVLTASELAELLGVSRRTARR 294
                        330       340
                 ....*....|....*....|...
gi 517703739 341 DIADLVGRGALKKNpGGGRSTSY 363
Cdd:COG3177  295 DLKDLVELGILEKV-GGGRNTRY 316
 
Name Accession Description Interval E-value
COG3177 COG3177
Fic family protein [Transcription];
22-363 2.07e-82

Fic family protein [Transcription];


Pssm-ID: 442410 [Multi-domain]  Cd Length: 316  Bit Score: 253.84  E-value: 2.07e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739  22 PMLAAAAREQGRLLGRMQGLGfALREEASLRMLSEDIVDSGAIEGERLPLDQVRSSLARRLGlkAGGLVASGRDVDGMVE 101
Cdd:COG3177    2 PELLKLLAEADEALGRLDGLP-EELRELLRKLLIEEAYASSAIEGNTLTLDEVRSLLEGGLT--GGPPLRDEREVLNYVE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 102 LMLDATKAF-DRELTVDRLFDWHAALFPtGRSGMTRIPvARWRDDEEGPmdvvsgpvgreTVHFSAPPAERIPGEVDAFL 180
Cdd:COG3177   79 ALEYLLELLrGEPLTEELILELHRILLK-GLRGEDKEP-GEYRTGQVGI-----------GAVYVPPPPEEVPELMEELL 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 181 SWFKTPGPLDPLLVAGLAHLWFVTIHPFEDGNGRIARAIADMALARADGSAERFYSMSGQILRERSDYYAILERTqkQED 260
Cdd:COG3177  146 DWLNEEDELHPLIKAAIAHYQFETIHPFADGNGRTGRLLMNLLLLRAGLLSQPLLPLSRIIEEDRDEYYDALEAV--RET 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 261 LDITLWLEWFLGCLQRSLDSAQDALEHVLFKAQfwerfatEPLNARQIKVLNRLLDgfEGGMTSSRWARMAKCSQDTAQR 340
Cdd:COG3177  224 GDLTPWIEFFLEAILEAAEEALALLERLLELAR-------GRLNERQRKLLELLFE--NPVLTASELAELLGVSRRTARR 294
                        330       340
                 ....*....|....*....|...
gi 517703739 341 DIADLVGRGALKKNpGGGRSTSY 363
Cdd:COG3177  295 DLKDLVELGILEKV-GGGRNTRY 316
DUF4172 pfam13776
Domain of unknown function (DUF4172); The family is often found in association with pfam02661.
3-84 4.29e-37

Domain of unknown function (DUF4172); The family is often found in association with pfam02661.


Pssm-ID: 433469  Cd Length: 82  Bit Score: 128.76  E-value: 4.29e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739    3 YIWELTGWPHWQWDAEHIAPMLAAAAREQGRLLGRMQGLGFALREEASLRMLSEDIVDSGAIEGERLPLDQVRSSLARRL 82
Cdd:pfam13776   1 YIWQQPDWPNFTWDAAALAPLLAEVRLRQGRLLGRLAGLGFDLREEAVLETLTEEAVKSSEIEGEILNRESVRSSIARRL 80

                  ..
gi 517703739   83 GL 84
Cdd:pfam13776  81 GL 82
 
Name Accession Description Interval E-value
COG3177 COG3177
Fic family protein [Transcription];
22-363 2.07e-82

Fic family protein [Transcription];


Pssm-ID: 442410 [Multi-domain]  Cd Length: 316  Bit Score: 253.84  E-value: 2.07e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739  22 PMLAAAAREQGRLLGRMQGLGfALREEASLRMLSEDIVDSGAIEGERLPLDQVRSSLARRLGlkAGGLVASGRDVDGMVE 101
Cdd:COG3177    2 PELLKLLAEADEALGRLDGLP-EELRELLRKLLIEEAYASSAIEGNTLTLDEVRSLLEGGLT--GGPPLRDEREVLNYVE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 102 LMLDATKAF-DRELTVDRLFDWHAALFPtGRSGMTRIPvARWRDDEEGPmdvvsgpvgreTVHFSAPPAERIPGEVDAFL 180
Cdd:COG3177   79 ALEYLLELLrGEPLTEELILELHRILLK-GLRGEDKEP-GEYRTGQVGI-----------GAVYVPPPPEEVPELMEELL 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 181 SWFKTPGPLDPLLVAGLAHLWFVTIHPFEDGNGRIARAIADMALARADGSAERFYSMSGQILRERSDYYAILERTqkQED 260
Cdd:COG3177  146 DWLNEEDELHPLIKAAIAHYQFETIHPFADGNGRTGRLLMNLLLLRAGLLSQPLLPLSRIIEEDRDEYYDALEAV--RET 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739 261 LDITLWLEWFLGCLQRSLDSAQDALEHVLFKAQfwerfatEPLNARQIKVLNRLLDgfEGGMTSSRWARMAKCSQDTAQR 340
Cdd:COG3177  224 GDLTPWIEFFLEAILEAAEEALALLERLLELAR-------GRLNERQRKLLELLFE--NPVLTASELAELLGVSRRTARR 294
                        330       340
                 ....*....|....*....|...
gi 517703739 341 DIADLVGRGALKKNpGGGRSTSY 363
Cdd:COG3177  295 DLKDLVELGILEKV-GGGRNTRY 316
DUF4172 pfam13776
Domain of unknown function (DUF4172); The family is often found in association with pfam02661.
3-84 4.29e-37

Domain of unknown function (DUF4172); The family is often found in association with pfam02661.


Pssm-ID: 433469  Cd Length: 82  Bit Score: 128.76  E-value: 4.29e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739    3 YIWELTGWPHWQWDAEHIAPMLAAAAREQGRLLGRMQGLGFALREEASLRMLSEDIVDSGAIEGERLPLDQVRSSLARRL 82
Cdd:pfam13776   1 YIWQQPDWPNFTWDAAALAPLLAEVRLRQGRLLGRLAGLGFDLREEAVLETLTEEAVKSSEIEGEILNRESVRSSIARRL 80

                  ..
gi 517703739   83 GL 84
Cdd:pfam13776  81 GL 82
Fic pfam02661
Fic/DOC family; This family consists of the Fic (filamentation induced by cAMP) protein and ...
114-224 3.21e-14

Fic/DOC family; This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.


Pssm-ID: 426907  Cd Length: 94  Bit Score: 67.87  E-value: 3.21e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517703739  114 LTVDRLFDWHAALFpTGRSGMTRIpvarwRDDEEgpmdvvsgpvgRETVHFSAPPAERIPGEVDAFLSWFkTPGPLDPLL 193
Cdd:pfam02661   2 LDLEDLLALHRLLI-ERHGGAGGA-----RDVNV-----------SGLLESALARPEQIPFGLEELLLYP-DLDREHPLE 63
                          90       100       110
                  ....*....|....*....|....*....|.
gi 517703739  194 VAGLAHLWFVTIHPFEDGNGRIARAIADMAL 224
Cdd:pfam02661  64 KAAALHFGFAKIHPFRDGNGRTARLLANLFL 94
FIDO COG2184
Fido, protein-threonine AMPylation domain [Signal transduction mechanisms];
168-227 1.60e-05

Fido, protein-threonine AMPylation domain [Signal transduction mechanisms];


Pssm-ID: 441787 [Multi-domain]  Cd Length: 196  Bit Score: 45.30  E-value: 1.60e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517703739 168 PAERIPGEVDAFLSWFKTPGPLDPL----LVAGLAHLW--FVTIHPFEDGNGRIARAIADMALARA 227
Cdd:COG2184   88 PPSFIERELEALFDDLREENYLRGLdreeFAERLARFHgeLNVIHPFREGNGRTQRLFFDQLARQA 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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