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Conserved domains on  [gi|517881656|ref|WP_019051864|]
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VirB3 family type IV secretion system protein [Sphingobium xenophagum]

Protein Classification

TrbD family protein( domain architecture ID 10009156)

TrbD family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TrbD COG5268
Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular ...
 7-91 6.19e-28

Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 444081  Cd Length: 88  Bit Score: 96.51  E-value: 6.19e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517881656  7 EAVPGFVVPVHRALTEHILLGGAPRGLAIANATLAAAIGLGLRLWIAGVVIFALGHLVSVWAARRDPQFVDVARRHLRFP 86
Cdd:COG5268   4 EAVEGFRVPVHRALTRPILLGGAPRELAILNGTLAAALGLGLQLWIVGLALWLVGHALAVWMAKRDPQFFKVYLRHLRYK 83


                ....*
gi 517881656 87 CLLRV 91
Cdd:COG5268  84 AYYRP 88
 
Name Accession Description Interval E-value
TrbD COG5268
Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular ...
 7-91 6.19e-28

Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444081  Cd Length: 88  Bit Score: 96.51  E-value: 6.19e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517881656  7 EAVPGFVVPVHRALTEHILLGGAPRGLAIANATLAAAIGLGLRLWIAGVVIFALGHLVSVWAARRDPQFVDVARRHLRFP 86
Cdd:COG5268   4 EAVEGFRVPVHRALTRPILLGGAPRELAILNGTLAAALGLGLQLWIVGLALWLVGHALAVWMAKRDPQFFKVYLRHLRYK 83


                ....*
gi 517881656 87 CLLRV 91
Cdd:COG5268  84 AYYRP 88
 
Name Accession Description Interval E-value
TrbD COG5268
Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular ...
 7-91 6.19e-28

Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444081  Cd Length: 88  Bit Score: 96.51  E-value: 6.19e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517881656  7 EAVPGFVVPVHRALTEHILLGGAPRGLAIANATLAAAIGLGLRLWIAGVVIFALGHLVSVWAARRDPQFVDVARRHLRFP 86
Cdd:COG5268   4 EAVEGFRVPVHRALTRPILLGGAPRELAILNGTLAAALGLGLQLWIVGLALWLVGHALAVWMAKRDPQFFKVYLRHLRYK 83


                ....*
gi 517881656 87 CLLRV 91
Cdd:COG5268  84 AYYRP 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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