NfeD family protein [Staphylococcus intermedius]
Protein Classification
NfeD family protein( domain architecture ID 1002096)
NfeD (nodulation formation efficiency D) family protein containing only the C-terminal soluble OB-fold NfeD (NfeDC) domain, may interact with other spatially proximal membrane proteins and regulate their activities
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| NfeD super family | cl34070 | Membrane-bound serine protease NfeD, ClpP class [Posttranslational modification, protein ... |
20-225 | 4.69e-34 | ||||
Membrane-bound serine protease NfeD, ClpP class [Posttranslational modification, protein turnover, chaperones]; The actual alignment was detected with superfamily member COG1030: Pssm-ID: 440653 [Multi-domain] Cd Length: 413 Bit Score: 125.74 E-value: 4.69e-34
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| Name | Accession | Description | Interval | E-value | ||||
| NfeD | COG1030 | Membrane-bound serine protease NfeD, ClpP class [Posttranslational modification, protein ... |
20-225 | 4.69e-34 | ||||
Membrane-bound serine protease NfeD, ClpP class [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440653 [Multi-domain] Cd Length: 413 Bit Score: 125.74 E-value: 4.69e-34
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| NfeD | pfam01957 | NfeD-like C-terminal, partner-binding; NfeD-like proteins are widely distributed throughout ... |
144-225 | 7.31e-11 | ||||
NfeD-like C-terminal, partner-binding; NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighbouring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbour which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts. Pssm-ID: 460395 Cd Length: 90 Bit Score: 56.82 E-value: 7.31e-11
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| Name | Accession | Description | Interval | E-value | ||||
| NfeD | COG1030 | Membrane-bound serine protease NfeD, ClpP class [Posttranslational modification, protein ... |
20-225 | 4.69e-34 | ||||
Membrane-bound serine protease NfeD, ClpP class [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440653 [Multi-domain] Cd Length: 413 Bit Score: 125.74 E-value: 4.69e-34
|
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| NfeD | pfam01957 | NfeD-like C-terminal, partner-binding; NfeD-like proteins are widely distributed throughout ... |
144-225 | 7.31e-11 | ||||
NfeD-like C-terminal, partner-binding; NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighbouring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbour which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts. Pssm-ID: 460395 Cd Length: 90 Bit Score: 56.82 E-value: 7.31e-11
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| Blast search parameters | ||||
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