NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|518029140|ref|WP_019199348|]
View 

MULTISPECIES: TIGR02300 family protein [Afipia]

Protein Classification

FYDLN acid domain-containing protein( domain architecture ID 10020691)

FYDLN acid domain-containing protein contains a FYDLN motif and a long region of low complexity sequence rich with Asp and Glu residues

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FYDLN_acid TIGR02300
TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif ...
 1-135 3.39e-25

TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


:

Pssm-ID: 131353  Cd Length: 129  Bit Score: 92.74  E-value: 3.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518029140    1 MAKADLGTKRICPTTGKKFYDLNKNPVISPYTGEIVPIAPVPPPRTRaDAAARAAAANAASIVPEPAEAEELVSLEEADA 80
Cdd:TIGR02300   1 MAKPDLGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEALKSRRV-RADDEKEAVAVKEVDPEIDEAAELVSLEEADE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 518029140   81 EENSGkvkAVLPESEDDIEVDETLtDDDDDDSTFIAEDEEDDEDVTDIIGdVSGD 135
Cdd:TIGR02300  80 EVDPG---APTPAGGDDLAEDEDI-ADDDDDVTFLEDEEDDDIDDEDIIG-VSGE 129
 
Name Accession Description Interval E-value
FYDLN_acid TIGR02300
TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif ...
 1-135 3.39e-25

TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


Pssm-ID: 131353  Cd Length: 129  Bit Score: 92.74  E-value: 3.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518029140    1 MAKADLGTKRICPTTGKKFYDLNKNPVISPYTGEIVPIAPVPPPRTRaDAAARAAAANAASIVPEPAEAEELVSLEEADA 80
Cdd:TIGR02300   1 MAKPDLGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEALKSRRV-RADDEKEAVAVKEVDPEIDEAAELVSLEEADE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 518029140   81 EENSGkvkAVLPESEDDIEVDETLtDDDDDDSTFIAEDEEDDEDVTDIIGdVSGD 135
Cdd:TIGR02300  80 EVDPG---APTPAGGDDLAEDEDI-ADDDDDVTFLEDEEDDDIDDEDIIG-VSGE 129
FYDLN_acid pfam09538
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a ...
 1-102 1.54e-21

Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


Pssm-ID: 430674 [Multi-domain]  Cd Length: 108  Bit Score: 82.78  E-value: 1.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518029140    1 MAKADLGTKRICPTTGKKFYDLNKNPVISPYTGEIVPIAPVPPPRTRADAAARAAAANAASIVPEPAEAEELVSLEEADA 80
Cdd:pfam09538   1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGTVFPPESVLRSRRARAEAAAAAPKAAAEDDEEDDVVAEDVSDEDADE 80

                          90       100
                  ....*....|....*....|....*.
gi 518029140   81 EENSGKV----KAVLPESEDDIEVDE 102
Cdd:pfam09538  81 EEDGGDDddddVDLGDDDDDDVFLED 106
COG4530 COG4530
Uncharacterized conserved protein [Function unknown];
1-34 4.41e-21

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443598  Cd Length: 36  Bit Score: 79.47  E-value: 4.41e-21
                         10        20        30
                 ....*....|....*....|....*....|....
gi 518029140   1 MAKADLGTKRICPTTGKKFYDLNKNPVISPYTGE 34
Cdd:COG4530    1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGT 34
 
Name Accession Description Interval E-value
FYDLN_acid TIGR02300
TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif ...
 1-135 3.39e-25

TIGR02300 family protein; Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


Pssm-ID: 131353  Cd Length: 129  Bit Score: 92.74  E-value: 3.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518029140    1 MAKADLGTKRICPTTGKKFYDLNKNPVISPYTGEIVPIAPVPPPRTRaDAAARAAAANAASIVPEPAEAEELVSLEEADA 80
Cdd:TIGR02300   1 MAKPDLGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEALKSRRV-RADDEKEAVAVKEVDPEIDEAAELVSLEEADE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 518029140   81 EENSGkvkAVLPESEDDIEVDETLtDDDDDDSTFIAEDEEDDEDVTDIIGdVSGD 135
Cdd:TIGR02300  80 EVDPG---APTPAGGDDLAEDEDI-ADDDDDVTFLEDEEDDDIDDEDIIG-VSGE 129
FYDLN_acid pfam09538
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a ...
 1-102 1.54e-21

Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.


Pssm-ID: 430674 [Multi-domain]  Cd Length: 108  Bit Score: 82.78  E-value: 1.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518029140    1 MAKADLGTKRICPTTGKKFYDLNKNPVISPYTGEIVPIAPVPPPRTRADAAARAAAANAASIVPEPAEAEELVSLEEADA 80
Cdd:pfam09538   1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGTVFPPESVLRSRRARAEAAAAAPKAAAEDDEEDDVVAEDVSDEDADE 80

                          90       100
                  ....*....|....*....|....*.
gi 518029140   81 EENSGKV----KAVLPESEDDIEVDE 102
Cdd:pfam09538  81 EEDGGDDddddVDLGDDDDDDVFLED 106
COG4530 COG4530
Uncharacterized conserved protein [Function unknown];
1-34 4.41e-21

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443598  Cd Length: 36  Bit Score: 79.47  E-value: 4.41e-21
                         10        20        30
                 ....*....|....*....|....*....|....
gi 518029140   1 MAKADLGTKRICPTTGKKFYDLNKNPVISPYTGE 34
Cdd:COG4530    1 MAKPELGTKRTCPSCGARFYDLNKDPIVCPKCGT 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH