|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
19-318 |
2.51e-118 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 343.63 E-value: 2.51e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 19 MQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS-GV 97
Cdd:COG1172 16 LPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 98 DPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTnyAFQLFGRGYFLGIPVPAI 177
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPD--AFRALGQGSLLGIPVPVL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 178 TMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDA 257
Cdd:COG1172 174 IALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDA 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 518089444 258 IAAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDR 318
Cdd:COG1172 254 IAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDR 314
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
25-321 |
2.97e-117 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 340.93 E-value: 2.97e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 25 FLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDPVLAII 104
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 105 LGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPI-TGLGTNY-AFQLFGRGYFLGIPVPAITMVLA 182
Cdd:PRK09512 102 AALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDNAdLFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 183 FVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVV 262
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 518089444 263 LGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKKS 321
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
55-317 |
8.38e-96 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 284.30 E-value: 8.38e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 55 VAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS-GVDPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATL 133
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNaGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 134 ATMTVFRGLTLVYTDGNPITGLGTNYAFqLFGRGYFLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISG 213
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSF-FLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 214 IKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLN 293
Cdd:cd06579 160 INVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLN 239
|
250 260
....*....|....*....|....
gi 518089444 294 LLGVSSFYQLVVKGIVILIAVLLD 317
Cdd:cd06579 240 LLGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
19-317 |
4.44e-66 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 211.93 E-value: 4.44e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 19 MQKLGPFLGLFILVIIVSIL-NPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS-G 96
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQILtGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNwG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 97 VDPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTnyAFQLFGRGY-------- 168
Cdd:NF040906 82 MPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPD--GFQKISSGFlpdlfggt 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 169 -------------------------------------------------------------FLGIPVPAITMVLAFVILW 187
Cdd:NF040906 160 glhlltlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasYRGLPNVLIILGVLILVYS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 188 VLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTS 267
Cdd:NF040906 240 FVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGAS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 518089444 268 LSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLD 317
Cdd:NF040906 320 ASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-314 |
1.04e-30 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 116.59 E-value: 1.04e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 47 NILNLLRQVAINGLIAFGMTFVI-LTGGIDLSVGAILALSSALVAGMIVSGV-DPVLAIILGCIIGGVLGMINGLLITKG 124
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGpGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 125 KMAPFIATLATMTVFRGLTLVY----TDGNPITGLGTNYAFQLFGRGYFLGIPVPAITMVLAfVILWVLLHKTPFGRRTY 200
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLvtgiLGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLV-LALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 201 AIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPT-AGESYELDAIAAVVLGGTslsggrGRIIGTL 279
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 518089444 280 IGVLIIGTLNN-GLNLLGVSSFYQLVVKGIVILIAV 314
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
19-318 |
2.51e-118 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 343.63 E-value: 2.51e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 19 MQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS-GV 97
Cdd:COG1172 16 LPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 98 DPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTnyAFQLFGRGYFLGIPVPAI 177
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPD--AFRALGQGSLLGIPVPVL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 178 TMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDA 257
Cdd:COG1172 174 IALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDA 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 518089444 258 IAAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDR 318
Cdd:COG1172 254 IAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDR 314
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
25-321 |
2.97e-117 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 340.93 E-value: 2.97e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 25 FLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDPVLAII 104
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 105 LGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPI-TGLGTNY-AFQLFGRGYFLGIPVPAITMVLA 182
Cdd:PRK09512 102 AALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDNAdLFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 183 FVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVV 262
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 518089444 263 LGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKKS 321
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
55-317 |
8.38e-96 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 284.30 E-value: 8.38e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 55 VAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS-GVDPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATL 133
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNaGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 134 ATMTVFRGLTLVYTDGNPITGLGTNYAFqLFGRGYFLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISG 213
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSF-FLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 214 IKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLN 293
Cdd:cd06579 160 INVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLN 239
|
250 260
....*....|....*....|....
gi 518089444 294 LLGVSSFYQLVVKGIVILIAVLLD 317
Cdd:cd06579 240 LLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
3-318 |
2.51e-95 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 285.67 E-value: 2.51e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 3 TEQLQTEQKRIHFDGVMQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAIL 82
Cdd:COG4158 11 PSAAPAAARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSIL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 83 ALSSalVAGMIVSGVD--PVLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYA 160
Cdd:COG4158 91 AASA--VVAVLVSLLPglGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 161 FqlFGRGYFLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTS 240
Cdd:COG4158 169 W--IGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAA 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 518089444 241 RLHSAQPT-AGESYELDAIAAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDR 318
Cdd:COG4158 247 RLYAANGLqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDR 325
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
19-322 |
4.81e-87 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 266.21 E-value: 4.81e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 19 MQKLGPFLGLFILVIIVSILN-PSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS-G 96
Cdd:COG4214 22 LRSLGMIIALVVIWIVFQILTgGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNwG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 97 VDPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNyaFQLFGRGY-------- 168
Cdd:COG4214 102 LPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPT--FQAIGNGFlpdilgtl 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 169 --------------------------------------------------------FLGIPVPAITMVLAFVILWVLLHK 192
Cdd:COG4214 180 swvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsYRGIPIVVLILLVLVVVYTFVLTR 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 193 TPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTSLSGGR 272
Cdd:COG4214 260 TVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGV 339
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 518089444 273 GRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLD---RKKSA 322
Cdd:COG4214 340 GTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDvlsRRRRG 392
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
11-318 |
2.33e-76 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 236.59 E-value: 2.33e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 11 KRIHFDGVMQKLGPFLGLFILVIIVSILNPS-FLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALV 89
Cdd:PRK09699 1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 90 AGMIVSGVDPVLAIILGCII-GGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLgtNYAFQLFGRGY 168
Cdd:PRK09699 81 AKLMLAGVDPFLAALIGGVLvGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGF--SFDFVNFFAAS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 169 FLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPT 248
Cdd:PRK09699 159 VIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPL 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 249 AGESYELDAIAAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDR 318
Cdd:PRK09699 239 AGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDR 308
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
25-321 |
1.03e-73 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 230.33 E-value: 1.03e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 25 FLGLFILViivSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDPVLAII 104
Cdd:PRK11285 36 FAVLFIAC---SLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLWLGVA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 105 LGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPItgLGTNYAFQLFGRGYFLGIPVPAITMVLAFV 184
Cdd:PRK11285 113 AGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAV--GISDERFFALGYANFFGVPAPIWLTVACFV 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 185 ILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLG 264
Cdd:PRK11285 191 VFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLG 270
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 518089444 265 GTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKKS 321
Cdd:PRK11285 271 GVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQ 327
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
19-317 |
4.44e-66 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 211.93 E-value: 4.44e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 19 MQKLGPFLGLFILVIIVSIL-NPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS-G 96
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQILtGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNwG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 97 VDPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTnyAFQLFGRGY-------- 168
Cdd:NF040906 82 MPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPD--GFQKISSGFlpdlfggt 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 169 -------------------------------------------------------------FLGIPVPAITMVLAFVILW 187
Cdd:NF040906 160 glhlltlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasYRGLPNVLIILGVLILVYS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 188 VLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTS 267
Cdd:NF040906 240 FVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGAS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 518089444 268 LSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLD 317
Cdd:NF040906 320 ASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
23-322 |
1.48e-65 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 209.54 E-value: 1.48e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 23 GPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDP--- 99
Cdd:PRK09478 17 GIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNAnkv 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 100 ---------VLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTD---GNPITGLGTNyaFQLFGRG 167
Cdd:PRK09478 97 fpelatmpiALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGFDSG--FSTFAQG 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 168 YF----LGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLH 243
Cdd:PRK09478 175 FValgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIG 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 518089444 244 SAQPTAGESYELDAIAAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKKSA 322
Cdd:PRK09478 255 SATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYA 333
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
26-318 |
6.80e-52 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 173.60 E-value: 6.80e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 26 LGLFILV-IIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS-GVDPVLAI 103
Cdd:PRK11618 12 IGVFVLGyLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDyGWSPLLAF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 104 ILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGL-TLVYTDGNPITGLG----TNYAFQLFGRGYflgIPVPAIT 178
Cdd:PRK11618 92 PLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVsFLVSEESIPINHPFydtlSSLAWKLPGGGR---LSAMALI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 179 MVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAI 258
Cdd:PRK11618 169 MLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAI 248
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 518089444 259 AAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLG-VSSFYQLVVKGIVILIAVLLDR 318
Cdd:PRK11618 249 AAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGtLSSWWTKIVIGILLFVFIALQR 309
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
20-317 |
1.61e-40 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 144.49 E-value: 1.61e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 20 QKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDP 99
Cdd:PRK15432 9 RELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYSL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 100 VLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNyaFQLFGRGYFLGI-PVPAIT 178
Cdd:PRK15432 89 PVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAE--LKQLSAPILLGIsPIGWLT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 179 MVLAFVILWvLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAI 258
Cdd:PRK15432 167 LILILAMAW-LLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAI 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 518089444 259 AAVVLGGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLD 317
Cdd:PRK15432 246 AACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
28-315 |
2.52e-39 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 141.12 E-value: 2.52e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 28 LFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDPVLAIILGC 107
Cdd:PRK15038 15 LVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 108 IIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGL----GTNYAFQLFGRGYFLGIPVPAITMVLAF 183
Cdd:PRK15038 95 LLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSGMAGATGYegigGFPMAFTDFANLDVLGLPVPLIIFLICL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 184 VILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVL 263
Cdd:PRK15038 175 LVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVL 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 518089444 264 GGTSLSGGRGRIIGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVL 315
Cdd:PRK15038 255 GGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-314 |
1.04e-30 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 116.59 E-value: 1.04e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 47 NILNLLRQVAINGLIAFGMTFVI-LTGGIDLSVGAILALSSALVAGMIVSGV-DPVLAIILGCIIGGVLGMINGLLITKG 124
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGpGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 125 KMAPFIATLATMTVFRGLTLVY----TDGNPITGLGTNYAFQLFGRGYFLGIPVPAITMVLAfVILWVLLHKTPFGRRTY 200
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLvtgiLGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLV-LALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 201 AIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPT-AGESYELDAIAAVVLGGTslsggrGRIIGTL 279
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 518089444 280 IGVLIIGTLNN-GLNLLGVSSFYQLVVKGIVILIAV 314
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
57-314 |
1.38e-29 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 113.53 E-value: 1.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 57 INGLIAFGMTFVILTGGI-DLSVGAILALSSALVAGMIVSGVDPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATLAT 135
Cdd:cd06574 3 IYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 136 MTVFRGLTLVYTDGNPITGLGTNYAF---QLFGRGYFLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALIS 212
Cdd:cd06574 83 MIGLYSINLRIMGGPNIPLGTRDTLLgllLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 213 GIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTSLSG--GRGRIIGTLIGVLIIGTLNN 290
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILYRIALA 242
|
250 260
....*....|....*....|....
gi 518089444 291 GLNLLGVSSFYQLVVKGIVILIAV 314
Cdd:cd06574 243 LALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
48-316 |
2.87e-18 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 83.21 E-value: 2.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 48 ILNLLRQVAINGLIAFGMTFVI-LTGGIDLSVGAILALSsALVAGMIVS--GVDPVLAIILGCIIGGVLGMINGLLITKG 124
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLgYTGLLSLGHAAFFGIG-AYAAALLTThlGLPFWLALLLAGLVAALLGLLIGLPALRL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 125 KMAPF-IATLATMTVFRGLTLVYTDG-NPITGLGTNYAFQLFGRGYFLGIPVPAITMVLAFVILWVL--LHKTPFGRRTY 200
Cdd:COG4177 83 RGDYLaIATLAFAEIVRLLALNLESLtGGADGLSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLrrLVRSRFGRALR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 201 AIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTA-GESYELDAIAAVVLggtslsGGRGRIIGTL 279
Cdd:COG4177 163 AIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESfSFLLSIEILLMVVL------GGLGSLLGPV 236
|
250 260 270
....*....|....*....|....*....|....*..
gi 518089444 280 IGVLIIGTLNNGLNLLGvssFYQLVVKGIVILIAVLL 316
Cdd:COG4177 237 LGAVLLVLLPELLRSLP---EYRLLIFGLLLILVVLF 270
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
56-318 |
3.83e-18 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 82.48 E-value: 3.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 56 AINGLIAFGMTFVI-LTGGIDLSVGAILALSS-ALVAGMIVSGVDPVLAIILGCIIGGVLGMINGLLIT----KGKMAPF 129
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAyVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLrplrGAPLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 130 IATLATMTVFRGLTLVYTDGNPITGLGTNYAFQLFGRGYFLGIP--VPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEK 207
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYrlFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 208 AALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLhSAQPTAGESYELDAIAAVVLGGTslsggrGRIIGTLIGVLIIGT 287
Cdd:cd06582 166 AARLLGINVRRVFALTFALGAALAGLAGVLLAPIT-GVSPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLGL 238
|
250 260 270
....*....|....*....|....*....|.
gi 518089444 288 LNNGLNLLGVSSFYQLVVkgIVILIAVLLDR 318
Cdd:cd06582 239 AESLAAAYLSSGYKDAVA--FVLLILVLLVR 267
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
48-316 |
4.19e-18 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 82.80 E-value: 4.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 48 ILNLLRQVAINGLIAFGMTFV-ILTGGIDLSVGAILALSsALVAGMIVS--GVDPVLAIILGCIIGGVLGMINGLLI--- 121
Cdd:COG0559 8 LLNGLSLGSIYALIALGLTLIfGVMGVINFAHGEFVMLG-AYVAYTLATllGLPLWLALLLAVLVAALLGVLLERLVirp 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 122 --TKGKMAPFIATLATMTVFRGLTLVYTDGNPITglgtnYAFQLFGRGYFLGIPVPAITM------VLAFVILWVLLHKT 193
Cdd:COG0559 87 lrGAPPLALLLATIGLSLVLQGLVLLIFGADPRS-----FPALLSGSVELGGVSIPAYRLfiivvaLVLLAALWLFLRRT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 194 PFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLhSAQPTAGESYELDAIAAVVLGGTslsggrG 273
Cdd:COG0559 162 RLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIY-SVSPTMGFLLGLKAFAAVVLGGL------G 234
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 518089444 274 RIIGTLIGVLIIGTLNNGLNLLgVSSFYQLVVkGIVILIAVLL 316
Cdd:COG0559 235 SIPGAVVGGLLLGLAESLGAAY-LPSGYKDVV-AFVLLILVLL 275
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
55-316 |
2.10e-17 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 80.57 E-value: 2.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 55 VAINGLIAFGMTFVILTGGIdLSVG-----AILALSSALVagMIVSGVDPVLAIILGCIIGGVLGMINGLLITKGKMAPF 129
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGQ-LSLGhaaffGIGAYTAALL--ATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 130 -IATLATMTVFRGLTLVYTD----GNPITGLGTNYAFQLFGRGYFLGIPVPAITMVLAFVILWVLLHkTPFGRRTYAIGG 204
Cdd:cd06581 78 aIATLAFAEIVRLLALNWSSltggSNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVR-SPFGRALRAIRE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 205 NEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTA-GESYELDAIAAVVLggtslsGGRGRIIGTLIGVL 283
Cdd:cd06581 157 NEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESfGFALSIELLLMVVL------GGLGSLLGPVLGAA 230
|
250 260 270
....*....|....*....|....*....|...
gi 518089444 284 IIGTLNNGLNLLGVSsfYQLVVKGIVILIAVLL 316
Cdd:cd06581 231 LLVLLPELLRSLGPG--LRLLVFGLLLILVVLF 261
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
78-313 |
2.08e-12 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 65.54 E-value: 2.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 78 VGAILALSSALVAGMIVSGVdPVLAIILGCIIGGVLGMINGLLITKGKMAPFIATLATMTVFRGLTlvytdgnpitglgt 157
Cdd:cd06580 30 LGAFAAALVALYLGLPATGS-LPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLT-------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 158 NYAFqlfgrgyflgipvpaITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAI 237
Cdd:cd06580 95 SYLL---------------LLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518089444 238 LTSRLHSaQPTAGES--YELDAIAAVVLggtslsgGRGRIIGTLIGVLIIGTLNNGLNLL----GVSSFYQLVVKGIVIL 311
Cdd:cd06580 160 LVLGVQG-RFTEGMSagYGFIAIAVALL-------GRWNPLGILLAALLFGALEAGGIALqrsgGVPSELVQVLPGIIVL 231
|
..
gi 518089444 312 IA 313
Cdd:cd06580 232 FV 233
|
|
| |
