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Conserved domains on  [gi|518131856|ref|WP_019302064|]
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LiaI-LiaF-like domain-containing protein [Xanthomonas oryzae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5668 pfam18917
Domain of unknown function (DUF5668); This entry is composed of two transmembrane helices that ...
 5-50 2.07e-04

Domain of unknown function (DUF5668); This entry is composed of two transmembrane helices that are often found in 2 or three copies in a protein. The members of this family are functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 40 amino acids in length. This entry is often associated with pfam09922 a putative adhesive domain that adopts a beta helix fold.


:

Pssm-ID: 465909  Cd Length: 42  Bit Score: 34.27  E-value: 2.07e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 518131856   5 LIPALFLIVLGALFLLDNLGLAHMDvgnlIATWWPVFLIAAGVRQL 50
Cdd:pfam18917  1 LFWGLILILIGLLFLLDNLGLIPFD----LWKLWPLLLILIGLALL 42
 
Name Accession Description Interval E-value
DUF5668 pfam18917
Domain of unknown function (DUF5668); This entry is composed of two transmembrane helices that ...
 5-50 2.07e-04

Domain of unknown function (DUF5668); This entry is composed of two transmembrane helices that are often found in 2 or three copies in a protein. The members of this family are functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 40 amino acids in length. This entry is often associated with pfam09922 a putative adhesive domain that adopts a beta helix fold.


Pssm-ID: 465909  Cd Length: 42  Bit Score: 34.27  E-value: 2.07e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 518131856   5 LIPALFLIVLGALFLLDNLGLAHMDvgnlIATWWPVFLIAAGVRQL 50
Cdd:pfam18917  1 LFWGLILILIGLLFLLDNLGLIPFD----LWKLWPLLLILIGLALL 42
 
Name Accession Description Interval E-value
DUF5668 pfam18917
Domain of unknown function (DUF5668); This entry is composed of two transmembrane helices that ...
 5-50 2.07e-04

Domain of unknown function (DUF5668); This entry is composed of two transmembrane helices that are often found in 2 or three copies in a protein. The members of this family are functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 40 amino acids in length. This entry is often associated with pfam09922 a putative adhesive domain that adopts a beta helix fold.


Pssm-ID: 465909  Cd Length: 42  Bit Score: 34.27  E-value: 2.07e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 518131856   5 LIPALFLIVLGALFLLDNLGLAHMDvgnlIATWWPVFLIAAGVRQL 50
Cdd:pfam18917  1 LFWGLILILIGLLFLLDNLGLIPFD----LWKLWPLLLILIGLALL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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