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Conserved domains on  [gi|518167459|ref|WP_019337667|]
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MULTISPECIES: lipoprotein [Stenotrophomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5373 super family cl34992
Uncharacterized membrane protein [Function unknown];
31-84 1.50e-04

Uncharacterized membrane protein [Function unknown];


The actual alignment was detected with superfamily member COG5373:

Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 38.44  E-value: 1.50e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 518167459  31 VLPQKPVPVEETVEPVAEPATEATPTETQGSGTPATTVD--PAAPTTQPAPAPAKK 84
Cdd:COG5373   45 SAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEApaPAAAAPPAEAEPAAA 100
 
Name Accession Description Interval E-value
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
31-84 1.50e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 38.44  E-value: 1.50e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 518167459  31 VLPQKPVPVEETVEPVAEPATEATPTETQGSGTPATTVD--PAAPTTQPAPAPAKK 84
Cdd:COG5373   45 SAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEApaPAAAAPPAEAEPAAA 100
 
Name Accession Description Interval E-value
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
31-84 1.50e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 38.44  E-value: 1.50e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 518167459  31 VLPQKPVPVEETVEPVAEPATEATPTETQGSGTPATTVD--PAAPTTQPAPAPAKK 84
Cdd:COG5373   45 SAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEApaPAAAAPPAEAEPAAA 100
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
32-82 3.14e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 34.98  E-value: 3.14e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 518167459  32 LPQKPVPVEETVEPVAEPATEATPTETQGSGTPATTVDPAAPTTQPAPAPA 82
Cdd:COG5373   37 LAEAAEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPA 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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