|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
43-737 |
7.02e-86 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 284.80 E-value: 7.02e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 43 LDALQVTAQRRVENAKDVPVAISAIQGEKLDVLGsaGDDIRFLAARVPSLNIESSYGRAfPRFYIRGLGNtdfdlnASQP 122
Cdd:COG1629 1 LEEVVVTATRTDESLQDVPGSVSVISREQLEDQP--ATDLGDLLRRVPGVSVTSAGGGA-GQISIRGFGG------GGNR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 123 VSLVYDDVVQESPL-----LKGFPLFDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQG 197
Cdd:COG1629 72 VLVLVDGVPLNDPSggdggLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 198 AYGGPlTDRWSARVSAIYQRRDDWVDNTRagapnsgfegYDEAAGRVQFLYEGDD---FEALFNLHKRKLNGTARLFRAN 274
Cdd:COG1629 152 SLSGG-NGKLAYRLSASYRDSDGYRDNSD----------SDRYNLRAKLGYQLGDdtrLTLSASYSDSDQDSPGYLTLAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 275 IIQKGGNGLVENFDRDkvandgvNFSDLETWGGSARLQWNLGS--VTLHSITGYetaeSLNRGDIDGGYGEASLGAGNYg 352
Cdd:COG1629 221 LRPRGAMDDGTNPYSN-------DTDDNTRDRYSLSLEYEHLGdgLKLSASAYY----RYDDTDLDSDFTPTPADGGTL- 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 353 pgfipfssesADGLPHHRQWTQEFRVESNE--WGRFDWQAGVFYFDEDVTINNFNYNSLKPGNPQTGHVV-QNQRNKAWA 429
Cdd:COG1629 289 ----------EQTDFDNRTYGLELRLTYDLgfGGKHTLLVGLDYQRQDLDGSGYPLDLGSGSLPTLTSGAdDDGTTTSLA 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 430 VFASGDFDVTDRFKLRAGVRYTQDKKDFNasvlqavpfgTPVSGPYVANTDVND--VSWDVSGVYKLTDNVNAYARVAKG 507
Cdd:COG1629 359 LYAQDTYKLTDKLTLTAGLRYDYVSYDVD----------DTVTGTDSASGSRSYsaFSPSLGLTYQLSPNLSLYASYSRG 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 508 FRAPSIQ-----GRLAFAPGLSQADSEKVISYEAGIKADLFERRARLGLSVFRYNVDGQQL--IAVGGTNNTATLLNADK 580
Cdd:COG1629 429 FRAPTFGelyanGTDPYSVGNPDLKPETSTNYELGLRYRLLDGRLSLSLALFYSDVDNEILsvPLPNDSGFSTYYTNAGK 508
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 581 TIGQGVELDLEAYLADNVLLTFGSSYNDTEIKDKDLAVAVcgggctvtdpitmiggkpyalVNGNPLPQAPKWIHNATLR 660
Cdd:COG1629 509 ARSYGVELELSYQLTPGLSLNASYSYTDAKFDDDTDGSAD---------------------LDGNRLPGVPPLTANLGLT 567
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518167911 661 VGFPlsdgSELYAYTDWAYRSAVNFFIYESPEFRGRSSLeGGLRLGYNWDyGQYDVAVFGRNLTNQTRVVGAIDFNN 737
Cdd:COG1629 568 YEFP----GGWSLGLGVRYVGDRYLDDANTQGAPGGYTL-VDLGAGYRFG-DNLTLSLGVDNLFDKKYATSLSVRAS 638
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
80-756 |
2.41e-47 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 178.41 E-value: 2.41e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 80 DDIRFLAARVPSLNIESSYGRAFPRFYIRGLG--NTDFDLNAsqpVSLVYDDVVQESPLLKgFPLFDLANVEVLRGPQGT 157
Cdd:cd01347 16 TSLADLLRRIPGVSVTRGGGGGGSTISIRGFGpdRTLVLVDG---LPLASSNYGRGVDLNT-IPPELIERVEVLKGPSSA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 158 LFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGA---YGGPLT--DRWSARVSAIYQRRDDWVDntRAGAPNS 232
Cdd:cd01347 92 LYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSGSSGGGgfdVSGALAddGAFGARLYGAYRDGDGTID--GDGQADD 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 233 GFEGYDEAAGRVQF-LYEGDDFEALFNLHKRKLNGTarlFRANIIQKGGNGLVENFDRDKVANDGVNFSDLETWGGSARL 311
Cdd:cd01347 170 SDEERYNVAGKLDWrPDDDTRLTLDAGYQDQDADGP---GGTLPANGTGSSLGGGPSSNTNGDRDWDYRDRYRKRASLGL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 312 --QWNLGSVTLHSITGYETAESLNRGDIDGGYGEASLGAGNYGPGFIPFSSESADGLPhhrQWTQEFRVESnewGRFDWQ 389
Cdd:cd01347 247 ehDLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFDA---GLNAPFGTGP---VAHTLT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 390 AGVFYFDEDVTINNfnynslkpgnpqtghvvqnqrnkaWAVFASGDFDVTDRFKLRAGVRYtqDKKDFNASVLQAVPFGT 469
Cdd:cd01347 321 LGVEYRREELDEKQ------------------------TALYAQDTIELTDDLTLTLGLRY--DHYDQDSKDTIAGGTTA 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 470 PVSGpyvantdvNDVSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRLAFAPGLSQA-------DSEKVISYEAGIKADl 542
Cdd:cd01347 375 KKSY--------SHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGSHGGTAavgnpnlKPEKSKQYELGLKYD- 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 543 FERRARLGLSVFRYNVDgqQLIAVGGTNNTATLL----NADKTIGQGVELDLEAYLADNVLLTFGSSYNDTEIKdkdlav 618
Cdd:cd01347 446 PGDGLTLSAALFRIDIK--NEIVSTPTNTGLGLVtvyvNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVK------ 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 619 avcgggctvtdpitmiggKPYALVNGNPLPQAPKWIHNATLRVGFPLSDgseLYAYTDWAYRSAVN---FFIYESPEFRG 695
Cdd:cd01347 518 ------------------RTDGATTGNRLPGIPKHTANLGLDYELPDEG---LTAGGGVRYRGKQYadtANGNNTVKVPG 576
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518167911 696 RSSLegGLRLGYNWDYGqYDVAVFGRNLTNQTRV-VGAIDFNNLTGFLNEPRTWGVEFTAKF 756
Cdd:cd01347 577 YTLV--DLSASYQFTKN-LTLRLGVNNLFDKDYYtSLSVRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
59-756 |
7.64e-29 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 122.52 E-value: 7.64e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 59 DVPVAISAIQGEKLDVLGsaGDDIRFLAARVPS-LNIESSYGRAFPRFYIRGLGNTDFDLNA---SQPVSLVYDDVVQes 134
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQ--AGSLSEALQRVPGvVVGGSGGTTQFGNITIRGFGLEVDIDNVyldGVPLLSRGNLAIV-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 135 pllkgfPLFDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGAYGGPLTD--RWSARVS 212
Cdd:TIGR01783 77 ------DPAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGAdgTFRGRLN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 213 AIYQRRDDWVDN----TRAGAPNSGFegydEAAGRVQFLYEGDDfealfnLHKRKLNGTARLFRANIIQkgGNGLVENFD 288
Cdd:TIGR01783 151 GARQDGDSFYDGageeTRLGATATDW----QLDDRTLLRLGAYY------QKERDRGGYGGLPASGGTS--GRDLSSDRY 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 289 RDKVANDGVNfsDLETWGGSARLQWNLGSVTLHSIT-GYETAESLNRGDIDGGYGEASLGAGNYGPGFipfsSESADGLP 367
Cdd:TIGR01783 219 LGTSSNRNYD--DREYLSYGLSLEYQFNDVWTGKQNlRYSYFDTDSNQVQASGYSSDGGLFGRSLTVV----NVKQDRVQ 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 368 HHRQWTQEFRVESNE----WGRFDWQAGVFYF--DEDVTINNFNYNSLKPGNPQTGHVVQNQRN----KAWAVFASGDFD 437
Cdd:TIGR01783 293 IDAGLDGEFETGPIEhdllLGVSYGQRTTNRFnnTGYPSDNIYSLTATSSARTDIGDSPKDRALssttKALNGVALQRIL 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 438 VTDRFKLRAGVRYTQDKKDFNASVlqavpFGTPVSgpyvanTDVNDVSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRL 517
Cdd:TIGR01783 373 LADKWTLTLGGRYDSVDVKSNNGV-----AGSTGK------RDDSQFTPSLGVAYKPTDDWSLYASYAESFKPGGYYPKG 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 518 AfAPGLSQADSEKVISYEAGIKADlFERRARLGLSVFRYNVDGQqlIAVGGTNNTaTLLNADKTIGQGVELDLEAYLADN 597
Cdd:TIGR01783 442 A-GNSGDILEPEKGKNYELGVRYD-LGDSLLATAALFRITKDNQ--LVQDPVNGT-FSVNAGKTRNRGVELEARGYLTPG 516
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 598 VLLTFGSSYNDTEIKDkdlavavcgggctvtdpitmiggKPYALVNGNPLPQAPKwiHNATLRVGFPLSDGSELYAYTdW 677
Cdd:TIGR01783 517 LSLSAGYTYTDAEFTE-----------------------DTNGDTQGNTVPFVPK--HTASLWASYAPPVGDNGLTLG-G 570
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 678 AYRSAVNFFIYESPEFRGRSSLEGGLRLGYNWDYGQYDVAVFG-RNLTNQTRVVGAIDFNNLTG-FLNEPRTWGVEFTAK 755
Cdd:TIGR01783 571 GVQYTGKAYVDGGNTGKVPSYTVVDLSVRYDLTKKKNLTLALNvNNLFDRDYYTSGYRWGPSAYiYPGAPRTVGLSVSYD 650
|
.
gi 518167911 756 F 756
Cdd:TIGR01783 651 F 651
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
279-755 |
1.13e-23 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 105.24 E-value: 1.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 279 GGNGLVENFDRDKVANDGVNFSDLETWGGSARLQWNLGSvTLHSITGYETAESLNRGDIDGGYGeaslGAGNYGPGFIPF 358
Cdd:pfam00593 35 DGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGD-GLSWLSTLRLGLRYSSLDGDYTSN----SSGLSGAGDYLS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 359 SSESADGLPHHRQWTQEFRVESNEWGRFDWQAGVFYFDEDVTINNFNYNSLKPGNPQTGHVVQNQrnkaWAVFASGDFDV 438
Cdd:pfam00593 110 DDRLYGLYGLDGDLELSLDLSHDLLLGVELRTAGLDYRRLDDDAYDPYDPANPSSSSYSDTTTDS----YGLYLQDNIKL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 439 TDRFKLRAGVRYTQDKKDFNASVLQAVPFgtpvsgpyvaNTDVNDVSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRLA 518
Cdd:pfam00593 186 TDRLTLTLGLRYDHYSTDGDDGNGGGDNF----------SRSYSAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGELYG 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 519 FAPGLSQA---------DSEKVISYEAGIKadLFERRARLGLSVFRYNVDGQQL---IAVGGTNNTATLLNADKTIGQGV 586
Cdd:pfam00593 256 SGSGGGGGavaggnpdlKPETSDNYELGLK--YDDGRLSLSLALFYIDIKNLITsdpDGPGLGGTVYTYTNVGKARIRGV 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 587 ELDLEAYLADnvLLTFGSSYNDTEIKDKDLAVAvcgggctvtdpitmiggkpyalvNGNPLPQAPKWIHNATLRVGFPLS 666
Cdd:pfam00593 334 ELELSGRLWG--LGLSGGGYTYTDADDDADADD-----------------------TGNPLPNVPRHTANLGLTYDFPLG 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 667 DgseLYAYTDWAYRSAVNFFIYESPE-FRGRSSLEGGLRLGYNWDYgQYDVAVFGRNLTNQT-RVVGAIDFNNLTGFLNE 744
Cdd:pfam00593 389 G---WGARLGARYVGSGERRYGDAANtFKTPGYTLVDLSAGYRLNK-NLTLRLGVNNLFDKYyKRYYSSGGGNLGGYPGP 464
|
490
....*....|.
gi 518167911 745 PRTWGVEFTAK 755
Cdd:pfam00593 465 GRTFYLGLSYK 475
|
|
| PRK10003 |
PRK10003 |
ferric-rhodotorulic acid outer membrane transporter; Provisional |
1-605 |
7.89e-15 |
|
ferric-rhodotorulic acid outer membrane transporter; Provisional
Pssm-ID: 236640 [Multi-domain] Cd Length: 729 Bit Score: 78.37 E-value: 7.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 1 MSPTRTSRGRlPVARP-LVAALSALLPLVAAAQETPAAKDPVALDALQVTAQRRVEN----------------AKDVPVA 63
Cdd:PRK10003 3 TQFNRDNQYQ-AIAKPsLLAGCIALALLPSAAFAAPATEDTVIVEGSATAPVDDGEQdysvkttsagtkmqmtQRDIPQS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 64 ISAI-----QGEKLDVLGSAGDDIRFLAARVpslnIESSygRAFprFYIRGLGNTDFdlnasqpvslVYDDV--VQESPL 136
Cdd:PRK10003 82 VSIVsqqrmEDQQLQTLGEVMENTLGISKSQ----ADSD--RAL--YYSRGFQIDNY----------MVDGIptYFESRW 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 137 LKGFPLFDLA---NVEVLRGPQGTLFGRNTPAGVVKFDSARP-SQDADGYVRVGYGSYNSWNVQGAYGGPLTD--RWSAR 210
Cdd:PRK10003 144 NLGDALSDTAlfeRVEVVRGATGLMTGTGNPSAAINMVRKHAtSREFKGDVSAEYGSWNKQRYVADLQSPLTEdgKVRAR 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 211 VSAIYQRRDDWVDntRAGAPNSGFEG-YDEAAGRVQFLYEGDDFEALfNLHKRKLNGTARLFRaniiqkggNGLVENFDR 289
Cdd:PRK10003 224 IVAGYQNNDSWLD--RYNSEKTFFSGiVDADLGDLTTLSAGYEYQRI-DVNSPTWGGLPRWNT--------DGSSNSYDR 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 290 DKVANDGVNFSDLETWGGSARLQ------WNLGSVTLHSITGYETAESLNRGDIDGGYGEASLGAGNYGPGFIP------ 357
Cdd:PRK10003 293 ARSTAPDWAYNDKEINKVFMTLKqrfadtWQATLNATHSEVEFDSKMMYVDAYVDKATGMLVGPYSNYGPGFDYvggtgw 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 358 ------------FSSESAD--GLPHHRQWTQEFRVESNEWgrFDWQAGVFyFDEDVTINNFNYNSLKPG-NPQTghVVQN 422
Cdd:PRK10003 373 nsgkrkvdaldlFADGSYElfGRQHNLMFGGSYSKQNNRY--FSSWANIF-PDEIGSFYNFNGNFPQTDwSPQS--LAQD 447
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 423 QRNKAWAVFASGDFDVTDRFKLRAGVRYTqdkkDFNASVLqavpfgtpvsgpyVANTDVNDVSWDVSGVYKLTDNVNAYA 502
Cdd:PRK10003 448 DTTHMKSLYAATRVSLADPLHLILGARYT----NWRVDTL-------------TYSMEKNHTTPYAGLVYDINDNWSTYA 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 503 RVAkgfrapSIqgrlaFAPGLSQADSEKVIS------YEAGIKADLFERRARLGLSVFRY---NVDGQQLIAVGGTNNTA 573
Cdd:PRK10003 511 SYT------SI-----FQPQNDRDSSGKYLApitgnnYELGLKSDWMNSRLTTTLAIFRIeqdNVAQSTGTPIPGSNGET 579
|
650 660 670
....*....|....*....|....*....|..
gi 518167911 574 TLLNADKTIGQGVELDLEAYLADNVLLTFGSS 605
Cdd:PRK10003 580 AYKAVDGTVSKGVEFELNGAITDNWQLTFGAT 611
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
43-737 |
7.02e-86 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 284.80 E-value: 7.02e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 43 LDALQVTAQRRVENAKDVPVAISAIQGEKLDVLGsaGDDIRFLAARVPSLNIESSYGRAfPRFYIRGLGNtdfdlnASQP 122
Cdd:COG1629 1 LEEVVVTATRTDESLQDVPGSVSVISREQLEDQP--ATDLGDLLRRVPGVSVTSAGGGA-GQISIRGFGG------GGNR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 123 VSLVYDDVVQESPL-----LKGFPLFDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQG 197
Cdd:COG1629 72 VLVLVDGVPLNDPSggdggLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 198 AYGGPlTDRWSARVSAIYQRRDDWVDNTRagapnsgfegYDEAAGRVQFLYEGDD---FEALFNLHKRKLNGTARLFRAN 274
Cdd:COG1629 152 SLSGG-NGKLAYRLSASYRDSDGYRDNSD----------SDRYNLRAKLGYQLGDdtrLTLSASYSDSDQDSPGYLTLAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 275 IIQKGGNGLVENFDRDkvandgvNFSDLETWGGSARLQWNLGS--VTLHSITGYetaeSLNRGDIDGGYGEASLGAGNYg 352
Cdd:COG1629 221 LRPRGAMDDGTNPYSN-------DTDDNTRDRYSLSLEYEHLGdgLKLSASAYY----RYDDTDLDSDFTPTPADGGTL- 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 353 pgfipfssesADGLPHHRQWTQEFRVESNE--WGRFDWQAGVFYFDEDVTINNFNYNSLKPGNPQTGHVV-QNQRNKAWA 429
Cdd:COG1629 289 ----------EQTDFDNRTYGLELRLTYDLgfGGKHTLLVGLDYQRQDLDGSGYPLDLGSGSLPTLTSGAdDDGTTTSLA 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 430 VFASGDFDVTDRFKLRAGVRYTQDKKDFNasvlqavpfgTPVSGPYVANTDVND--VSWDVSGVYKLTDNVNAYARVAKG 507
Cdd:COG1629 359 LYAQDTYKLTDKLTLTAGLRYDYVSYDVD----------DTVTGTDSASGSRSYsaFSPSLGLTYQLSPNLSLYASYSRG 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 508 FRAPSIQ-----GRLAFAPGLSQADSEKVISYEAGIKADLFERRARLGLSVFRYNVDGQQL--IAVGGTNNTATLLNADK 580
Cdd:COG1629 429 FRAPTFGelyanGTDPYSVGNPDLKPETSTNYELGLRYRLLDGRLSLSLALFYSDVDNEILsvPLPNDSGFSTYYTNAGK 508
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 581 TIGQGVELDLEAYLADNVLLTFGSSYNDTEIKDKDLAVAVcgggctvtdpitmiggkpyalVNGNPLPQAPKWIHNATLR 660
Cdd:COG1629 509 ARSYGVELELSYQLTPGLSLNASYSYTDAKFDDDTDGSAD---------------------LDGNRLPGVPPLTANLGLT 567
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518167911 661 VGFPlsdgSELYAYTDWAYRSAVNFFIYESPEFRGRSSLeGGLRLGYNWDyGQYDVAVFGRNLTNQTRVVGAIDFNN 737
Cdd:COG1629 568 YEFP----GGWSLGLGVRYVGDRYLDDANTQGAPGGYTL-VDLGAGYRFG-DNLTLSLGVDNLFDKKYATSLSVRAS 638
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
18-695 |
9.02e-59 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 210.10 E-value: 9.02e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 18 VAALSALLPLVAAAQETPAAK-DPVALDALQVTAQRRVENAKDVPVAISAIQGEKLDVLGSAgdDIRFLAARVPSLNIES 96
Cdd:COG4771 1 LLLASLLLLLALAAQAADALAeDATELEEVVVTATRTEQSLSDAPASVSVITAEEIEKLGAT--DLADALRLLPGVSVTR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 97 SYGRAF-PRFYIRGLGntdfdlnaSQPVSLVYDDVVQESPLLKG------FPLFDLANVEVLRGPQGTLFGRNTPAGVVK 169
Cdd:COG4771 79 SGGRGGsSGISIRGLG--------GDRVLVLIDGVPVNNPALGGggdlsyIPPDDIERIEVIRGPASALYGSDAIGGVIN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 170 FDSARPSQDADGYVRVGYGSYN--SWNVQGAYGGPlTDRWSARVSAIYQRRDDWVDNTRAGApnSGFEGYDEAAGRVQFL 247
Cdd:COG4771 151 IITKKPTDELEGSVSLGYGSNGngTYSGSLSLGGP-GDKLSFLLSGSYRDRDGYLDYRNGGF--VGNSGYERYNLNAKLG 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 248 YEGDDfealfnlhKRKLNGTARLFRANIIQKGGNGLVENFDRDKVANDGVNFsdlETWGGSARLQWNLGSvTLHSITGYe 327
Cdd:COG4771 228 YRLSD--------NHRLSLSGGYSRQDRDGGPPTLGDTEISSDNAGDRDTTT---DRGNYSLRYNGDLGD-NLDLSLYY- 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 328 taeslNRGDIDGGYGEASLGAGNYGPgfipfssesadglPHHRQWTQEFRVESNEWGRFDWQAGVFYFDEDVTINNFNYN 407
Cdd:COG4771 295 -----SRTDRDSTNGSLGGSTGSFSD-------------SDDTTYGLELDLTYPLGGNHTLTLGAEYRYDDLDSSSFLGG 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 408 SlkpgnpqtghvvqNQRNKAWAVFASGDFDVTDRFKLRAGVRYTQDKkdfnasvlqavpfgtpvsgpYVANTDVNDVSWD 487
Cdd:COG4771 357 A-------------DASRDTYGLFAQDEWKLTDKLTLTAGLRYDYYS--------------------TFGASNYTAFSPR 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 488 VSGVYKLTDNVNAYARVAKGFRAPSIQGRLAFAPGLSQA--------DSEKVISYEAGIKADLFERRARLGLSVFRYNVD 559
Cdd:COG4771 404 LGLRYDLSDNLTLRASYGRGFRAPSLAELYGSGTGTPGRyvlgnpdlKPETSDNYELGLEYRLGNGGLSLSLTGFYTDIK 483
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 560 GQQL--IAVGGTNNTATLLNADKTIGQGVELDLEAYLADNVLLTFGSSYNDTEIKDKDlavavcgggctvtdpitmiggk 637
Cdd:COG4771 484 DLIVlvPVGPGPGDVLQYENVGKARTYGLELELKYRLGKGLTLTASYTYLDSKIDDGD---------------------- 541
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 518167911 638 pyalvNGNPLPQAPKwiHNATLRVGFPLSDGSELYAYTDWAYRSAVNFFIYESPEFRG 695
Cdd:COG4771 542 -----TGEPLPNVPP--HKANLGLDYRLPKWWLLLLLTRYYGGRYVTPPSGRLEGYTP 592
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
58-756 |
5.07e-57 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 205.88 E-value: 5.07e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 58 KDVPVAISAIQGEKLDVLGSagDDIRFLAARVPSLNIESSYGRAFPRFYIRGlgntdFDLNASQPVSLVYDDVVQEspll 137
Cdd:COG4774 7 LDTPQSVTVVTRELIEDQGA--TSLADALRNVPGVTFGAGEGGNGDSFSIRG-----FSASGDIYVDGLRDPGQYR---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 138 kgFPLFDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGAYGGPLTDRWSARVSAIYQR 217
Cdd:COG4774 76 --RDTFNLERVEVLKGPASVLYGRGSPGGVINLVTKRPTDEPFTEVTLTYGSDGQRRATLDVNGPLGDDLAYRLNGMYRD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 218 RDDWVDNTRagapnsgfegYDEAAGRVQFLYE-GDDFEALFNLHKRKLNGTARLFraniIQKGGNGLVENFDRDKVANDG 296
Cdd:COG4774 154 SDSYRDGVD----------NDRWGIAPSLTWRlGDRTRLTLDYEYQDDDRTPDYG----VPAVANGRPVDVDRSTFYGQP 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 297 VNFSDLETWGGSARLQWNLGS-VTLHSITGYETAESlnrgDIDGGYGEASLGAGNYGPGFIPFSSESadglphhRQWTQE 375
Cdd:COG4774 220 DDYSDSETDSATLRLEHDFNDnWTLRNALRYSDYDR----DYRNTYPTGGNATGTVTRSAYRRDQDN-------DTLSNQ 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 376 FRVESN-EWGRF--DWQAGVFYFDEDVTINNFNYNSLKP----GNPQTGHVV---------QNQRNKAWAVFASGDFDVT 439
Cdd:COG4774 289 TDLTGKfDTGGVkhTLLAGVEYSREDSDNARYSGGGTAPtvnlYNPVYGAPVtgptlggadNDSRTDTTGLYLQDTISLT 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 440 DRFKLRAGVRYTQDKKDFNasvlqavpfgTPVSGPYVANTDVNDVSWDVSGVYKLTDNVNAYARVAKGFRAPSiqGRLAF 519
Cdd:COG4774 369 DRWSLLAGLRYDRFDTDYT----------DRTTGATTSSYDDSAFSPRAGLVYKPTPNLSLYASYSTSFNPGG--GAPSL 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 520 APGLSQADSEKVISYEAGIKADLFERRARLGLSVFRYNvdgQQLIAVGGTNNTATLLNADKTIGQGVELDLEAYLADNVL 599
Cdd:COG4774 437 SNAGQALDPEKSRQYEVGVKWDLLDGRLSLTAALFRIE---KTNVRTTDPANPGVYVQTGEQRSRGVELEATGELTPGWS 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 600 LTFGSSYNDTEIKDkdlavavcgggcTVTdpitmiggkpyALVNGNPLPQAPKWIHNATLRVGFPLSD---GSELYaYTD 676
Cdd:COG4774 514 VLAGYTYLDAEITK------------SAN-----------AANVGNRLPNVPRHSASLWTTYDLPLPGltlGGGVR-YVG 569
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 677 WAYRSAVNFFiyespefrgrsSLEG----GLRLGYNWDyGQYDVAVFGRNLTNQTRVVGAIDFNNLTgfLNEPRTWGVEF 752
Cdd:COG4774 570 SRYADAANTV-----------KLPSytrfDAGASYRLN-KNLTLRLNVNNLTDKRYYASAYGSGYVT--PGAPRTVLLSA 635
|
....
gi 518167911 753 TAKF 756
Cdd:COG4774 636 SYRF 639
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
18-756 |
1.93e-56 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 205.13 E-value: 1.93e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 18 VAALSALLPLVAAAQETPAAKDPVALDALQVTAQRRVENA----------------KDVPVAISAIQGEKLDVLGSagDD 81
Cdd:COG4773 7 GSGLAAAAAGALAQAAAAAAAEATTLPEVTVTGTAEGTGGytakssstatkldtplRETPQSVSVVTRQLIEDQGA--TT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 82 IRFLAARVPSLNIESSYGRAFPRFYIRGlgntdFDLNASQpvslvYDDVVQESPLLKGFPLFDLANVEVLRGPQGTLFGR 161
Cdd:COG4773 85 LDDALRNVPGVTVSSYDGGGRDSFSIRG-----FSIDNYL-----RDGLPLGGFGGGQPDTANLERVEVLKGPAGLLYGA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 162 NTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGAYGGPLTD--RWSARVSAIYQRRDDWVDNTRagapnsgfegyde 239
Cdd:COG4773 155 GSPGGLVNLVTKRPTAEPQGEVSLSAGSWDTYRATADVGGPLNEdgTLRYRLNAAYEDGDSFRDGVD------------- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 240 aaGRVQFLY--------EGDDFEALFNLHKRKLNGTARLFraniiqkGGNGLVENFDRDKVANDGVNFSDLETWGGSARL 311
Cdd:COG4773 222 --NRRTLIApsldwdltDDTTLTLGAEYQDDDSTGDRGFL-------PLDGTLLDLPRSTNLGEPWDYYDTETTTLFAEL 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 312 QWNLGS-VTLHSITGYETAESLNRGDIDGGYGEASLGAGNYGPGFIPFssesadglpHHRQWTQEFRVEsnewGRFDW-- 388
Cdd:COG4773 293 EHRFNDdWSLRANARYSDSDRDGRSAYAYGAPDAATGTLTRYASARDG---------DSRSDSLDANLN----GKFETgg 359
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 389 -----QAGVFYFDEDVTINNFNYNSLKPGNPQTGHVV--------QNQRNKAWAVFASGDFDVTDRFKLRAGVRYTQDKK 455
Cdd:COG4773 360 lehtlLVGADYSRYDSDSDSATAGTINIYNPVYGNLPepdfdasdTDTTTRQTGLYAQDQISLTDRLSLLLGGRYDWYET 439
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 456 DfnasvlqavpfGTPVSGPYVANTDVNDVSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRL--AFAPGLSQadsekviS 533
Cdd:COG4773 440 D-----------STNRLGGSTTSYDDSAFTPRAGLVYDLTPGLSLYASYSESFEPQSGADNNgnPLDPETGK-------Q 501
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 534 YEAGIKADLFERRARLGLSVFRYNVDGqqlIAVGGTNNTATLLNADKTIGQGVELDLEAYLADNVLLTFGSSYNDTEIKD 613
Cdd:COG4773 502 YEAGVKGELFDGRLNATLAVFDITQKN---VATTDPDNPNFYVQVGEVRSRGVELELSGELTPGLNLIAGYTYTDAKITK 578
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 614 KDlavavcgggctvtdpitmiggkpyALVNGNPLPQAPKWIHNATLRVGFPLSDGSELYA-----YTDWAYRSAVNffiy 688
Cdd:COG4773 579 DA------------------------DALEGKRLTNVPRHTASLWTTYRFPSGALKGLGLgggvrYVGERYGDAAN---- 630
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 518167911 689 espEFRGRSSLEGGLRLGYNWDYgQYDVAVFGRNLTNQTRVVGAidFNNLTGFLNEPRTWGVEFTAKF 756
Cdd:COG4773 631 ---TFTLPSYTLVDAGARYDLGK-NWTLQLNVNNLFDKKYYASS--GSRGYVYYGAPRNVRLSLSYKF 692
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
80-756 |
2.41e-47 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 178.41 E-value: 2.41e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 80 DDIRFLAARVPSLNIESSYGRAFPRFYIRGLG--NTDFDLNAsqpVSLVYDDVVQESPLLKgFPLFDLANVEVLRGPQGT 157
Cdd:cd01347 16 TSLADLLRRIPGVSVTRGGGGGGSTISIRGFGpdRTLVLVDG---LPLASSNYGRGVDLNT-IPPELIERVEVLKGPSSA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 158 LFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGA---YGGPLT--DRWSARVSAIYQRRDDWVDntRAGAPNS 232
Cdd:cd01347 92 LYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSGSSGGGgfdVSGALAddGAFGARLYGAYRDGDGTID--GDGQADD 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 233 GFEGYDEAAGRVQF-LYEGDDFEALFNLHKRKLNGTarlFRANIIQKGGNGLVENFDRDKVANDGVNFSDLETWGGSARL 311
Cdd:cd01347 170 SDEERYNVAGKLDWrPDDDTRLTLDAGYQDQDADGP---GGTLPANGTGSSLGGGPSSNTNGDRDWDYRDRYRKRASLGL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 312 --QWNLGSVTLHSITGYETAESLNRGDIDGGYGEASLGAGNYGPGFIPFSSESADGLPhhrQWTQEFRVESnewGRFDWQ 389
Cdd:cd01347 247 ehDLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFDA---GLNAPFGTGP---VAHTLT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 390 AGVFYFDEDVTINNfnynslkpgnpqtghvvqnqrnkaWAVFASGDFDVTDRFKLRAGVRYtqDKKDFNASVLQAVPFGT 469
Cdd:cd01347 321 LGVEYRREELDEKQ------------------------TALYAQDTIELTDDLTLTLGLRY--DHYDQDSKDTIAGGTTA 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 470 PVSGpyvantdvNDVSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRLAFAPGLSQA-------DSEKVISYEAGIKADl 542
Cdd:cd01347 375 KKSY--------SHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGSHGGTAavgnpnlKPEKSKQYELGLKYD- 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 543 FERRARLGLSVFRYNVDgqQLIAVGGTNNTATLL----NADKTIGQGVELDLEAYLADNVLLTFGSSYNDTEIKdkdlav 618
Cdd:cd01347 446 PGDGLTLSAALFRIDIK--NEIVSTPTNTGLGLVtvyvNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVK------ 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 619 avcgggctvtdpitmiggKPYALVNGNPLPQAPKWIHNATLRVGFPLSDgseLYAYTDWAYRSAVN---FFIYESPEFRG 695
Cdd:cd01347 518 ------------------RTDGATTGNRLPGIPKHTANLGLDYELPDEG---LTAGGGVRYRGKQYadtANGNNTVKVPG 576
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518167911 696 RSSLegGLRLGYNWDYGqYDVAVFGRNLTNQTRV-VGAIDFNNLTGFLNEPRTWGVEFTAKF 756
Cdd:cd01347 577 YTLV--DLSASYQFTKN-LTLRLGVNNLFDKDYYtSLSVRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
22-756 |
2.02e-46 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 176.27 E-value: 2.02e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 22 SALLPLVAAAQETPAAKDPVALDALQVTAQR-RVENAKDVPVAISAIQGEKLDvlGSAGDDIRFLAARVPSLNIESSYGR 100
Cdd:COG4772 2 RRALAAALLLAAAAAAEAATTLETVVVTGSRaAEARLKDVPGSVSVVDREELE--NQAATSLREVLRRVPGVNVQEEDGF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 101 A-FPRFYIRGLGntdfdLNASQPVSLVYDDV-VQESPLLKG----FPLFD-LANVEVLRGPQGTLFGRNTPAGVVKFDSA 173
Cdd:COG4772 80 GlRPNIGIRGLG-----PRRSRGITLLEDGIpIAPAPYGDPaayyFPDLErMERIEVLRGAAALRYGPQTVGGAINFVTR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 174 RPSQDADGYVRVGYGSYNSWNVQGAYGGPlTDRWSARVSAIYQRRDDWVDNtragapnSGFEgYDEAAGRVQF-LYEGDD 252
Cdd:COG4772 155 TIPTAFGGELRVTGGSFGYRRTHASVGGT-VGNFGYLVEYSRKRGDGFRDN-------SGFD-INDFNAKLGYrLSDRQE 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 253 FEALFNLHKRKLNGTARLFRANiiqkggnglvenFDRD-KVANDGVNFSDLETWGGSARLQWNLGSVTLHSITGYetaes 331
Cdd:COG4772 226 LTLKFQYYDEDANTPGGLTDAQ------------FDADpRQSYRPADQFDTRRTQLSLRYEHQLSDNTTLTTTAY----- 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 332 lnrgdidggYGEASLGaGNYGPGFIPFSSESADGLPHHRQ---WTQEFRVESN-EWG--RFDWQAGVFYFDEDVTINNFN 405
Cdd:COG4772 289 ---------YNDFSRN-WYIRQNTADPNTPGLGLRGNPRGyrsYGIEPRLTHRfELGgvPHTLEVGLRYHREEEDRKQYV 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 406 --YNSLKPGNPQTGHvvQNQRNKAWAVFASGDFDVTDRFKLRAGVRYTQDkkDFNASVLQAVPFGTPVSGpyvaNTDVND 483
Cdd:COG4772 359 ntYGQGRSGAGLRRD--RRFSADALAAYAQNRFELTGRLTLTPGLRYEHI--RRDRTDRYSTRTGGDDSG----SNSYSE 430
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 484 VSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRLAFAPGLSQADSEKVISYEAGIKADLFeRRARLGLSVFRYNVDGQQL 563
Cdd:COG4772 431 FLPGLGLLYQLTDNLQLYANVSRGFEPPTFGDLAYGNGGNPDLKPEKSWNYELGTRGRIG-NGLSAEVALFYIDYDNELG 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 564 IAVGGTNNTATLLNADKTIGQGVEL----DLEAYLADNVLLTFGSSYNDTEIKDKDLAVavcgggctvtdpitmiggkpy 639
Cdd:COG4772 510 SCSAAGGDRSTFTNAGETRHQGLELaldyDLLKGGGLGLPLFAAYTYTDAEFTSDFGPV--------------------- 568
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 640 alVNGNPLPQAPKWIHNATLRVGFplsdgSELYAYTDWAYRSAVnFFIYESPEFRGRSSLEGG-----LRLGYNWdYGQY 714
Cdd:COG4772 569 --FAGNRLPYVPRHQLTAGLGYEH-----GGWTANLNGRYVSEQ-FTDAANTVADGSFGKIPSytvldLSASYDF-GKNL 639
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 518167911 715 DVAVFGRNLTNQTRVVGAIDfNNLTGFL-NEPRTWGVEFTAKF 756
Cdd:COG4772 640 SLFAGVNNLFDKRYIASRAP-NYAAGIRpGPPRTVYAGLRLKF 681
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
59-756 |
7.64e-29 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 122.52 E-value: 7.64e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 59 DVPVAISAIQGEKLDVLGsaGDDIRFLAARVPS-LNIESSYGRAFPRFYIRGLGNTDFDLNA---SQPVSLVYDDVVQes 134
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQ--AGSLSEALQRVPGvVVGGSGGTTQFGNITIRGFGLEVDIDNVyldGVPLLSRGNLAIV-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 135 pllkgfPLFDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGAYGGPLTD--RWSARVS 212
Cdd:TIGR01783 77 ------DPAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGAdgTFRGRLN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 213 AIYQRRDDWVDN----TRAGAPNSGFegydEAAGRVQFLYEGDDfealfnLHKRKLNGTARLFRANIIQkgGNGLVENFD 288
Cdd:TIGR01783 151 GARQDGDSFYDGageeTRLGATATDW----QLDDRTLLRLGAYY------QKERDRGGYGGLPASGGTS--GRDLSSDRY 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 289 RDKVANDGVNfsDLETWGGSARLQWNLGSVTLHSIT-GYETAESLNRGDIDGGYGEASLGAGNYGPGFipfsSESADGLP 367
Cdd:TIGR01783 219 LGTSSNRNYD--DREYLSYGLSLEYQFNDVWTGKQNlRYSYFDTDSNQVQASGYSSDGGLFGRSLTVV----NVKQDRVQ 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 368 HHRQWTQEFRVESNE----WGRFDWQAGVFYF--DEDVTINNFNYNSLKPGNPQTGHVVQNQRN----KAWAVFASGDFD 437
Cdd:TIGR01783 293 IDAGLDGEFETGPIEhdllLGVSYGQRTTNRFnnTGYPSDNIYSLTATSSARTDIGDSPKDRALssttKALNGVALQRIL 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 438 VTDRFKLRAGVRYTQDKKDFNASVlqavpFGTPVSgpyvanTDVNDVSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRL 517
Cdd:TIGR01783 373 LADKWTLTLGGRYDSVDVKSNNGV-----AGSTGK------RDDSQFTPSLGVAYKPTDDWSLYASYAESFKPGGYYPKG 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 518 AfAPGLSQADSEKVISYEAGIKADlFERRARLGLSVFRYNVDGQqlIAVGGTNNTaTLLNADKTIGQGVELDLEAYLADN 597
Cdd:TIGR01783 442 A-GNSGDILEPEKGKNYELGVRYD-LGDSLLATAALFRITKDNQ--LVQDPVNGT-FSVNAGKTRNRGVELEARGYLTPG 516
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 598 VLLTFGSSYNDTEIKDkdlavavcgggctvtdpitmiggKPYALVNGNPLPQAPKwiHNATLRVGFPLSDGSELYAYTdW 677
Cdd:TIGR01783 517 LSLSAGYTYTDAEFTE-----------------------DTNGDTQGNTVPFVPK--HTASLWASYAPPVGDNGLTLG-G 570
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 678 AYRSAVNFFIYESPEFRGRSSLEGGLRLGYNWDYGQYDVAVFG-RNLTNQTRVVGAIDFNNLTG-FLNEPRTWGVEFTAK 755
Cdd:TIGR01783 571 GVQYTGKAYVDGGNTGKVPSYTVVDLSVRYDLTKKKNLTLALNvNNLFDRDYYTSGYRWGPSAYiYPGAPRTVGLSVSYD 650
|
.
gi 518167911 756 F 756
Cdd:TIGR01783 651 F 651
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
279-755 |
1.13e-23 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 105.24 E-value: 1.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 279 GGNGLVENFDRDKVANDGVNFSDLETWGGSARLQWNLGSvTLHSITGYETAESLNRGDIDGGYGeaslGAGNYGPGFIPF 358
Cdd:pfam00593 35 DGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGD-GLSWLSTLRLGLRYSSLDGDYTSN----SSGLSGAGDYLS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 359 SSESADGLPHHRQWTQEFRVESNEWGRFDWQAGVFYFDEDVTINNFNYNSLKPGNPQTGHVVQNQrnkaWAVFASGDFDV 438
Cdd:pfam00593 110 DDRLYGLYGLDGDLELSLDLSHDLLLGVELRTAGLDYRRLDDDAYDPYDPANPSSSSYSDTTTDS----YGLYLQDNIKL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 439 TDRFKLRAGVRYTQDKKDFNASVLQAVPFgtpvsgpyvaNTDVNDVSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRLA 518
Cdd:pfam00593 186 TDRLTLTLGLRYDHYSTDGDDGNGGGDNF----------SRSYSAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGELYG 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 519 FAPGLSQA---------DSEKVISYEAGIKadLFERRARLGLSVFRYNVDGQQL---IAVGGTNNTATLLNADKTIGQGV 586
Cdd:pfam00593 256 SGSGGGGGavaggnpdlKPETSDNYELGLK--YDDGRLSLSLALFYIDIKNLITsdpDGPGLGGTVYTYTNVGKARIRGV 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 587 ELDLEAYLADnvLLTFGSSYNDTEIKDKDLAVAvcgggctvtdpitmiggkpyalvNGNPLPQAPKWIHNATLRVGFPLS 666
Cdd:pfam00593 334 ELELSGRLWG--LGLSGGGYTYTDADDDADADD-----------------------TGNPLPNVPRHTANLGLTYDFPLG 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 667 DgseLYAYTDWAYRSAVNFFIYESPE-FRGRSSLEGGLRLGYNWDYgQYDVAVFGRNLTNQT-RVVGAIDFNNLTGFLNE 744
Cdd:pfam00593 389 G---WGARLGARYVGSGERRYGDAANtFKTPGYTLVDLSAGYRLNK-NLTLRLGVNNLFDKYyKRYYSSGGGNLGGYPGP 464
|
490
....*....|.
gi 518167911 745 PRTWGVEFTAK 755
Cdd:pfam00593 465 GRTFYLGLSYK 475
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
48-235 |
1.81e-22 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 98.02 E-value: 1.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 48 VTAQRRVENAKDVPVAISAIQGEKLDVLGSAgdDIRFLAARVPSLNIESSYGR-AFPRFYIRGLGntdfdlnASQPVSLV 126
Cdd:COG4206 3 VTATRLEQSKSDLTGSVTVIDAEELERSGAT--SLADALRRVPGVQVSSSGGPgSAASISIRGLG-------SNQTLVLI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 127 ----YDDVVQESPLLKGFPLFDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGAYGGP 202
Cdd:COG4206 74 dgvpLNDPSLGGVDLSLIPPDDIERIEVLKGAASALYGSDAIGGVINITTKKGKKGFKGSVSASYGSFGTRRLSASLSGG 153
|
170 180 190
....*....|....*....|....*....|...
gi 518167911 203 lTDRWSARVSAIYQRRDDWVDNTRAGAPNSGFE 235
Cdd:COG4206 154 -AGKFSYSLSASYRRSDGYRYNDPDLRNNDGYE 185
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
43-615 |
5.32e-16 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 82.05 E-value: 5.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 43 LDALQVTAQRRVENAKDVPVAISAIQGEKLDVLGSAgdDIRFLAARVPSLNIESSyGRAFPRFY-IRGLGNTDfdlnasq 121
Cdd:TIGR01785 1 LDTVTVTATRTRQVLSEAPASVSVISGEQIESKQAN--NLADALNTVPGVDVTGG-GRPPGQSInIRGLQDNR------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 122 pVSLVYDDVVQesPLLKGFP-----LFDLAN---VEVLRGPQGTLFGRNTPAGVVKF------DSARPSQDADGYVRVGY 187
Cdd:TIGR01785 71 -VLVVVDGARQ--NYQRGGAhngslFVDPELlkrIEIVKGPSSSLYGSGALGGVVAFrtkdaaDLLRPGQLFGGLAKLSY 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 188 GSYN-SWNVQGAYGGPLTDRWSARVSAIYQRRDDWVDNTRAGAPNSGFEGYD---------EAAGRVQFLYEGDDFEALF 257
Cdd:TIGR01785 148 GSNNnSFGGSVAVAGRLDDNLDALVAATYRDGGNYRNGNKEEATNSAYVQKNllaklgwqlDDAQRLEFSYFTTEGSLDE 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 258 NlHKRKLNGTARLfraniiqkggnGLVENFDRDKVANDGvnfsdletwgGSARLQWNLGSVTLHSITgyeTAESLNRGDI 337
Cdd:TIGR01785 228 A-QNSGPGTEYVL-----------GSSSTLLASSTRDRS----------ATLTYNWTPEDNPWLDAT---ASLYYNRTEN 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 338 DGGYGEASLGAGNYgpgfIPFSSESADGlphhrQWTQEFRVESneWGRFDWqaGVFYFDEDVTINNFNYNSL--KPGNPQ 415
Cdd:TIGR01785 283 DNDRSARGVGREEG----YQYTTYGATL-----QNTSRFDVAS--WSTLTY--GVDWMKDKRRTESFDPNSVttIVPNPP 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 416 TGHvvqnqrNKAWAVFASGDFDV-TDRFKLRAGVRYTQDKKDfnasvlqavpfGTPVSGPYVANTDVNDVSWDVSGVYKL 494
Cdd:TIGR01785 350 SAK------EYFFGLFLQDNIPLlDDRLTLSAGLRYDHYKLS-----------PKTTADTEAVDRSYSRWSPSLGLSYKP 412
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 495 TDNVNAYARVAKGFRAPSI-----QGRLAFAPGLS------QADSEKVISYEAGIK---ADLF--ERRARLGLSVFRYNV 558
Cdd:TIGR01785 413 VDWLTLYASYSQGFRAPSIdelygTGDHPGTPGGYtfapnpNLKPETSKTWELGANlsfDNLLldNDQLQFKVAYFYNDV 492
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 518167911 559 DgqQLIAVG---------GTNNTATLLNADKTIGQGVELDLEaYLADnvLLTFGSSYNDTEIKDKD 615
Cdd:TIGR01785 493 K--DFIDLTigvtdnvtaGMNNITQYVNIDGARIRGIEASAS-YDAG--LWATGLSYGYTIGKDQN 553
|
|
| PRK10003 |
PRK10003 |
ferric-rhodotorulic acid outer membrane transporter; Provisional |
1-605 |
7.89e-15 |
|
ferric-rhodotorulic acid outer membrane transporter; Provisional
Pssm-ID: 236640 [Multi-domain] Cd Length: 729 Bit Score: 78.37 E-value: 7.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 1 MSPTRTSRGRlPVARP-LVAALSALLPLVAAAQETPAAKDPVALDALQVTAQRRVEN----------------AKDVPVA 63
Cdd:PRK10003 3 TQFNRDNQYQ-AIAKPsLLAGCIALALLPSAAFAAPATEDTVIVEGSATAPVDDGEQdysvkttsagtkmqmtQRDIPQS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 64 ISAI-----QGEKLDVLGSAGDDIRFLAARVpslnIESSygRAFprFYIRGLGNTDFdlnasqpvslVYDDV--VQESPL 136
Cdd:PRK10003 82 VSIVsqqrmEDQQLQTLGEVMENTLGISKSQ----ADSD--RAL--YYSRGFQIDNY----------MVDGIptYFESRW 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 137 LKGFPLFDLA---NVEVLRGPQGTLFGRNTPAGVVKFDSARP-SQDADGYVRVGYGSYNSWNVQGAYGGPLTD--RWSAR 210
Cdd:PRK10003 144 NLGDALSDTAlfeRVEVVRGATGLMTGTGNPSAAINMVRKHAtSREFKGDVSAEYGSWNKQRYVADLQSPLTEdgKVRAR 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 211 VSAIYQRRDDWVDntRAGAPNSGFEG-YDEAAGRVQFLYEGDDFEALfNLHKRKLNGTARLFRaniiqkggNGLVENFDR 289
Cdd:PRK10003 224 IVAGYQNNDSWLD--RYNSEKTFFSGiVDADLGDLTTLSAGYEYQRI-DVNSPTWGGLPRWNT--------DGSSNSYDR 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 290 DKVANDGVNFSDLETWGGSARLQ------WNLGSVTLHSITGYETAESLNRGDIDGGYGEASLGAGNYGPGFIP------ 357
Cdd:PRK10003 293 ARSTAPDWAYNDKEINKVFMTLKqrfadtWQATLNATHSEVEFDSKMMYVDAYVDKATGMLVGPYSNYGPGFDYvggtgw 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 358 ------------FSSESAD--GLPHHRQWTQEFRVESNEWgrFDWQAGVFyFDEDVTINNFNYNSLKPG-NPQTghVVQN 422
Cdd:PRK10003 373 nsgkrkvdaldlFADGSYElfGRQHNLMFGGSYSKQNNRY--FSSWANIF-PDEIGSFYNFNGNFPQTDwSPQS--LAQD 447
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 423 QRNKAWAVFASGDFDVTDRFKLRAGVRYTqdkkDFNASVLqavpfgtpvsgpyVANTDVNDVSWDVSGVYKLTDNVNAYA 502
Cdd:PRK10003 448 DTTHMKSLYAATRVSLADPLHLILGARYT----NWRVDTL-------------TYSMEKNHTTPYAGLVYDINDNWSTYA 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 503 RVAkgfrapSIqgrlaFAPGLSQADSEKVIS------YEAGIKADLFERRARLGLSVFRY---NVDGQQLIAVGGTNNTA 573
Cdd:PRK10003 511 SYT------SI-----FQPQNDRDSSGKYLApitgnnYELGLKSDWMNSRLTTTLAIFRIeqdNVAQSTGTPIPGSNGET 579
|
650 660 670
....*....|....*....|....*....|..
gi 518167911 574 TLLNADKTIGQGVELDLEAYLADNVLLTFGSS 605
Cdd:PRK10003 580 AYKAVDGTVSKGVEFELNGAITDNWQLTFGAT 611
|
|
| TonB-hemlactrns |
TIGR01786 |
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ... |
44-615 |
6.57e-14 |
|
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273808 [Multi-domain] Cd Length: 715 Bit Score: 75.53 E-value: 6.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 44 DALQVTAQR----RVENAKDVPVAISAIQGEKLDVLGSAgdDIRFLAARVPSLNIeSSYGRAFPR-FYIRGLGNTDfdln 118
Cdd:TIGR01786 1 DTITVTATRtadpQRRDLSVTPASVSVISREQLKSQQVR--NLRDLLRYEPGVSV-VEGGRGGSQgINIRGLDKNR---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 119 asqpVSLVYDDVVQ----ESPLLKGFPLFD-----LANVEVLRGPQGTLFGRNTPAGVVKF------DSARPSQDADGYV 183
Cdd:TIGR01786 74 ----VAVLVDGIRQntsyGGQGSTFYAINSidpelIKSIEIVKGASSSLYGSGALGGVVAFrtkdaaDLLKPGKDLGGLS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 184 RVGYGSYNSWNVQGAYGGPLTDRWSARVSAIYQRRDDWVDNTRAGAPN------SGFEGYDEAAGRVQFLYEGDDfealf 257
Cdd:TIGR01786 150 KLGYSSANNRFTQSVAAAGRNDDVDALVQATYRRGHELKNGNKANIGNeskrskPNPSDYKSQSFLAKLGWQLND----- 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 258 nLHKRKLNGTARLFRANIIQKGGNGLVENFDRDKVANDGVNFSDLETWggSARLQWNLGsvtLHSITGYetaeslnrgdI 337
Cdd:TIGR01786 225 -AHRLGLSLEYTQTDYDEPEMTNTSYLTKPLGAPLLSSTVVLGDSKTR--DRRTGLDYE---LNPDNSW----------L 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 338 DGGYGEASLGAGNYGPGFIPFSSESADGLP---HHRQWTQEFRVES--NEWGRFDW-----QAGVFYFDEDVTiNNFNYN 407
Cdd:TIGR01786 289 DTVKLALDKQYIQLYNYLNATSASDYPGVDkngRYKDKYDYYTLGFdtNNKIEFSVhslslTYGLDRFKDKVS-TGDSRR 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 408 SLkPGNPQTGHVVQNQRNKAWA----VFASGDFDVTDRFKLRAGVRYtqDKKDFNasvlqavPFGTPVSGPYVANTDVND 483
Cdd:TIGR01786 368 NL-PTAAYNLYGYEGENRPVKGsnfgLFLQDNIKLGDWLSLSAGLRY--DHYKTD-------PKADESKDYGAISKTYSR 437
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 484 VSWDVSGVYKLTDNVNAYARVAKGFRAPSI-----------QGRLAFAPGLsQADSEKVISYEAGIKADlFErRARLGLS 552
Cdd:TIGR01786 438 WSPSLGLTYKPTPWLTLYYSYSQGFRAPSFdelygtgahpgGGPYTFLPNP-NLKPETSKNWEIGINLH-FD-QLDFKVS 514
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 518167911 553 VFRYNVDgqQLIAVG------------GTNNTATLLNADKTIGQGVEL----DLEAYLADNVLLTFGSSYNDTEIKDKD 615
Cdd:TIGR01786 515 YFRNDYK--DFIDLGigvtakgnmaqvGSNTITNYVNIDNARIRGIELsgryDLGSFFSGPDGWTTTLKYGYTKGKDSD 591
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
14-659 |
1.07e-13 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 74.81 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 14 ARPLVAALSALLPLVAAAQETPAAKDPVALDALQVTAQRRVENAKDVPVAISAIQGEKLDvlGSAGDDIRFLAARVPSLN 93
Cdd:PRK13483 4 YLAQVISALCLLPAVFVTHALAQAAPDKTMETVVVTASGYEQQIRDAPASISVITREDLE--NRFYRDLTDALLDVPGVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 94 IESSYGRAfpRFYIRGLGNtDFDL----------NASQPVSlvyddvvqESPLLKGF---PLFDLANVEVLRGPQGTLFG 160
Cdd:PRK13483 82 VTGGGDRT--DISLRGMGS-QYTLilvdgkrqssRETRPNS--------DGPGVEQAwtpPLAAIERIEVIRGPMSSLYG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 161 RNTPAGVVKFDSARPSQDADGYVRVG---YGSYNSWNVQGA---YGGPL-TDRWSARVSAIYQRRDDwvDNTragapNSG 233
Cdd:PRK13483 151 SDAIGGVINIITRKVPNEWQGEVRLDttlQENSDSGNVYQAnffVNGPLiKDLLGLQLYGQYTQREE--DDI-----EGG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 234 FEGYDEAAGRVQFLYE-GDDFEALFNLhkrklnGTARLFRANIIQKGGNGLV--ENFDRDKVANDGVNFSDLETWGGSAR 310
Cdd:PRK13483 224 YRDKDARSLTAKLALTpNEDHDIMLEV------GTSNQERDSTVGKTVAPLApgESCGRRGCPESSTTEYERSTVSLSHT 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 311 LQWNLGSVtlHSITGYETAESLNRG-DIDGGYGEASLGAgnygpgfiPFSSESADGLphhrqwtqefrvesnewgrfdwq 389
Cdd:PRK13483 298 GRWDFGTS--DTYIQHEEFDNKSREmKIKNTDFQSSLVA--------PLGQEHTLTF----------------------- 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 390 aGVFYFDEDVTinnfnynslkpgnPQTGHVVQNQ---RNKAWAVFASGDFDVTDRFKLRAGVRYTQDKKdfnasvlqavp 466
Cdd:PRK13483 345 -GAAYNHQDLT-------------DETSNQISDLtdiSRTQWAVFSEDEWRIADDFALTGGLRLDHDEN----------- 399
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 467 FGTPVSgPyvantdvndvswDVSGVYKLTDNVNAYARVAKGFRAPSIQgrlAFAPGLSQA------------DSEKVISY 534
Cdd:PRK13483 400 FGGHVS-P------------RVYGVWNLAPSWTVKGGVSTGFRAPSLR---QTTPDWGQVsrggniygnpdlKPETSLNK 463
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 535 EAGIKADLFERRArLGLSVFrYN--------VDGQQLIAVGGTN----NTATLLNADKTIGQGVELDLEAYLADNVLLTF 602
Cdd:PRK13483 464 ELGLYYDLGSGLT-ASLTVF-YNefkdkitrVACPATQCTDGPNqfgaDPTTYVNIDEAVTQGVEASLSYPITSTLSLSG 541
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 518167911 603 GSSYNDTEIKDKDLAvavcgggctvtdpitmiggkpyalvnGNPLPQAPKWIHNATL 659
Cdd:PRK13483 542 NYTYTDSEQKSGAYK--------------------------GSPLNQLPKHLFQASL 572
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
57-167 |
4.47e-13 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 65.75 E-value: 4.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 57 AKDVPVAISAIQGEKLDVLGSAgdDIRFLAARVPSLNIESSYGRAFPRFYIRGLGntdfdlnaSQPVSLVYDDVVQESPL 136
Cdd:pfam07715 2 LRDTPGSVSVVTAEDIEDQGAT--NLADALRGVPGVSVSSGGGGGGSSISIRGFG--------SNRVLVLVDGVPLNSGG 71
|
90 100 110
....*....|....*....|....*....|....*.
gi 518167911 137 -----LKGFPLFDLANVEVLRGPQGTLFGRNTPAGV 167
Cdd:pfam07715 72 ggsvdLNSIDPEDIERVEVLKGPASALYGSGAIGGV 107
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
42-615 |
1.12e-08 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 58.49 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 42 ALDALQVTAQRRVENAKDVPVAISAIQGEKLDvlGSAGDDIRFLAARVPSLNIESSYG---------RAFPRFY------ 106
Cdd:PRK13486 24 AEDVMIVSASGYEKKLTNAAASVSVISQEELQ--SSQYHDLAEALRSVEGVDVESGTGktggleisiRGMPASYtlilid 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 107 -IRGLGNTDFDLNASqpvslvyddvvqeSPLLKGF--PLFDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYV 183
Cdd:PRK13486 102 gVRQGGSSDVTPNGF-------------SAMNTGFmpPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWLSSV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 184 RVGYG--SYNSWNVQGAY----GGPLTD-RWSARVSAIYQRRDdwvdntraGAPNSGFEgyDEAAGRVQFLYEGDDFeal 256
Cdd:PRK13486 169 NAGLNlqESNKWGNSSQFnfwsSGPLVDdSVSLQVRGSTQQRQ--------GSSVTSLS--DTAATRIPYPTESQNY--- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 257 fnlhkrklNGTARlfraniiqkggnglvenFDRDKVANDGVNFsDLETwggsARLQWNLGSVTLHSITG-YETAESLNRG 335
Cdd:PRK13486 236 --------NLGAR-----------------LDWKASEQDVLWF-DMDT----TRQRYDNRDGQLGSLTGgYDRTLRYERN 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 336 DIDGGYGEA-SLGAGNygpGFIPFSSESADGlphhRQWTQEFrVESNEWGRfdwqAGVfyfDEDVTINNFNYNSLKPGNP 414
Cdd:PRK13486 286 KISAGYDHTfTFGTWK---SYLNWNETENKG----RELVRSV-LKRDKWGL----AGQ---PRELKESNLILNSLLLTPL 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 415 QTGHVV---------------------QNQRNKAWAVFASGDFDVTDRFKLRAGVRYTQDKKdfnasvlqavpFGTPVSG 473
Cdd:PRK13486 351 GESHLVtvggefqsssmkdgvvlastgETFRQKSWSVFAEDEWHLTDALALTAGSRYEHHEQ-----------FGGHFSP 419
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 474 PYVANTDVNDvSWDVSGVYKLTDNVNAYARVAKGFRAPSIQGRLAFApGLSQADSEKVISYEAGIKADlferrarlGLSV 553
Cdd:PRK13486 420 RAYLVWDVAD-AWTLKGGVTTGYKAPRMGQLHKGISGVSGQGKTNLL-GNPDLKPEESVSYEAGVYYD--------NPAG 489
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 518167911 554 FRYNVDG------QQLIAVGGTNNTATLLNADKTIGQGVELDLE-AYLADNVLLTFGSSYNDTEIKDKD 615
Cdd:PRK13486 490 LNANVTGfmtdfsNKIVSYSINDNTNSYVNSGKARLHGVEFAGTlPLWSEDVTLSLNYTWTRSEQRDGD 558
|
|
| PRK09840 |
PRK09840 |
catecholate siderophore receptor Fiu; Provisional |
422-612 |
2.89e-06 |
|
catecholate siderophore receptor Fiu; Provisional
Pssm-ID: 182105 [Multi-domain] Cd Length: 761 Bit Score: 50.96 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 422 NQRNKAWAVFASGDFDVTDRFKLRAGVRYTQDKKDFNASVLQAVPFGTPVSGPYVANTDV-----------NDVSWDVSG 490
Cdd:PRK09840 441 NGQTDTFAIYAFDTLQLTRDWELNGGIRLDNYHTEYDSATACGGSGRGAITCPAGVAKGSpvttvdtaksgNLVNWKAGA 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 491 VYKLTDNVNAYARVAKGFRAPsiqGRLAFAPGLSQA---------DSEKVISYEAGIKADLFERraRLGLSVFRYNVDGQ 561
Cdd:PRK09840 521 LYKLTENGNVYINYAVSQQPP---GGSNFALAQSGSgnsanrtdfKPQKANTSEIGTKWQVLDK--RLLLTAALFRTDIE 595
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 518167911 562 QLIAvggTNNTATLLNADKTIGQGVELDLEAYLADNVLLTFGSSYNDTEIK 612
Cdd:PRK09840 596 NEVE---QNDDGTYSQYGKKRVEGYELSVAGNITPAWQVIAGYTQQKATVK 643
|
|
| PRK14049 |
PRK14049 |
ferrioxamine B receptor precursor protein; Provisional |
7-205 |
8.01e-06 |
|
ferrioxamine B receptor precursor protein; Provisional
Pssm-ID: 172541 [Multi-domain] Cd Length: 726 Bit Score: 49.51 E-value: 8.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 7 SRGRLPVARPLVAALSALlPLVAAA------QETPAAKDPVALDALQVTAQRRVENAKDVPVAISAIQGEKLDV------ 74
Cdd:PRK14049 2 SADLLPLIRAALAGTSAL-ALVATAqaqdagQESVSNEASTALETLVVNGGSGGVITADGYVATSSATGAKVDTpfletp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 75 --LGSAGDD---------IRFLAARVPSLNIES-SYGRAFPRFYIRGLGNTD---FDLNASQPVSLvyddvvqeSPLLKG 139
Cdd:PRK14049 81 qsISSVTEQqlkdrnpqtLLETLAYTPGARVGAfGFDPRFDAFFVRGFDVTYtgvFRDNLRQPGAS--------SSIFKT 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 518167911 140 FPlFDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGAYGGPLTD 205
Cdd:PRK14049 153 EP-YGLEGVSILRGPSSALYGASGAGGLFNLITKRPTEEPLREVQVQYGTNNRYQGQFDFSGPVNE 217
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
19-252 |
4.38e-05 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 46.80 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 19 AALSALLPLVAAAQEtpaakdpvaLDALQVTAQRRVENAKDVPVAISAIQGEKL---------DVLG--------SAGDD 81
Cdd:PRK10064 15 SAISCAWPVLAVDDD---------GETMVVTASAVEQNLKDAPASISVITQEDLqrkpvqnlkDVLKevpgvqltNEGDN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 82 IRFLAARvpslNIESSY------GRafpRFYIRG--LGNTDFDLNasqpvslvyddvvqespllkGFPLFDLANVEVLRG 153
Cdd:PRK10064 86 RKGVSIR----GLDSSYtlilidGK---RVNSRNavFRHNDFDLN--------------------WIPVDAIERIEVVRG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 154 PQGTLFGRNTPAGVVKFDSARPSQ------DADGYVRVGYGSYNSWNVQGAYGGPLTDR---WSARVSAIYQRRDDWVD- 223
Cdd:PRK10064 139 PMSSLYGSDALGGVVNIITKKIGQkwhgtvTVDTTIQEHRDRGDTYNGQFFTSGPLIDGvlgMKAYGSLAKREKDDPQNs 218
|
250 260
....*....|....*....|....*....
gi 518167911 224 NTRAGAPNSGFEGYDEAAGRVQFLYEGDD 252
Cdd:PRK10064 219 TTTDTGETPRIEGFTSRDGNVEFAWTPNQ 247
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
428-733 |
1.38e-04 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 45.14 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 428 WAVFASGDFDVTDRFKLRAGVRYTQDKKdfnasvlqavpFGTPVSgPyvantdvndvswDVSGVYKLTDNVNAYARVAKG 507
Cdd:PRK13513 364 WALFAEDEWQMTNDFALTGGIRMDQDQN-----------YGTHWT-P------------RLYGVWHLADQWTLKGGVSTG 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 508 FRAPSIQ-------------GRLAFAPGLSQADSEKVISYEAGIkadLFERRARLGLSVFRYNVDGQQLIA--------- 565
Cdd:PRK13513 420 YRSPDLRqatdnwgqltgggGLPALILGNSDLKPEKSISQEIGI---LWDNQENLNASVTLFNTDFKDKITevrncdttn 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 566 ------VGGTNNT--ATLLNADKTIGQGVELDLEAYLADNVLLTFGSSYNDTEIKDKDLAvavcgggctvtdpitmiggk 637
Cdd:PRK13513 497 tdgqcvFNGINYDfiSDRINVDKANMRGVEATFNWDINQAWSLATNYTFTQSEQKSGAFA-------------------- 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 638 pyalvnGNPLPQAPKWIHNATLrvgfplsDGSELYAYTDWA---YRSavnffiyESPEFRGRSSLEGGLRlgynwDYGQY 714
Cdd:PRK13513 557 ------GQPLNQMPKHMANATL-------NWQTTEDFATWIrinYRG-------KTSEYLNRTSMGSGTP-----SYTFV 611
|
330
....*....|....*....
gi 518167911 715 DVAVfGRNLTNQTRVVGAI 733
Cdd:PRK13513 612 DLGA-SYQLTKELRLMGGV 629
|
|
| PRK10044 |
PRK10044 |
ferrichrome outer membrane transporter; Provisional |
145-258 |
4.52e-04 |
|
ferrichrome outer membrane transporter; Provisional
Pssm-ID: 236643 [Multi-domain] Cd Length: 727 Bit Score: 43.59 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 145 LANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGYVRVGYGSYNSWNVQGAYGGPLTD--RWSARVSAIYQRRD--- 219
Cdd:PRK10044 159 LERAELMRGPVSVLYGKSNPGGLLNMVSKRPTTEPLKEVQFKMGTDNLFQTGFDFSDALDDdgVYSYRLTGLARSANaqq 238
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518167911 220 --------------DWV--DNTR-------AGAPNSGFEGYDEAAGRVQFLYEGDDFEALFN 258
Cdd:PRK10044 239 kgseeqryaiapsfTWRpdDKTNftflsyfQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFN 300
|
|
| PRK14050 |
PRK14050 |
TonB-dependent siderophore receptor; |
105-223 |
7.26e-04 |
|
TonB-dependent siderophore receptor;
Pssm-ID: 237595 [Multi-domain] Cd Length: 728 Bit Score: 42.87 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 105 FYIRGlgntdFDlnASQpVSLVYDDVVQESPLLKGFPL--FDLANVEVLRGPQGTLFGRNTPAGVVKFDSARPSQDADGY 182
Cdd:PRK14050 124 FYIRG-----FD--ATQ-TGVFLDGLNLFSYGFGGFQIdpFMLERVEVLKGPASVLYGGSNPGGIVNMVSKRPLDEPLYY 195
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 518167911 183 VRVGYGSYNSWNVQGAYGGPLTDR--WSARVSAIYQRRDDWVD 223
Cdd:PRK14050 196 TEIGINSYGNAFTGFDVGDKLSDDgtVRYRVTGKVAGGDNYSD 238
|
|
| portal_SPP1 |
TIGR01538 |
phage portal protein, SPP1 family; This model represents one of several distantly related ... |
61-198 |
2.53e-03 |
|
phage portal protein, SPP1 family; This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273678 Cd Length: 412 Bit Score: 40.99 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518167911 61 PVAISAIQGEKLDVLGSAGDDIRFlaarvPSLNIE-----SSYGRAFPRFYIRGLGNTDFDLNASQPVSLVYDDVVQESP 135
Cdd:TIGR01538 71 PVKFTSDDKTLLDYLNELANQNDF-----HDILNElvkdlSNKGRAYELLYVDEDDETDVVIFDPEEMFVVYDDNVEQDP 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 518167911 136 LlkgFPLF-----DLANVEVLrgpQGTLFgrnTPAGVVKFdsarpSQDADGYV-RVGYGSYNSWNVQGA 198
Cdd:TIGR01538 146 L---FAVRyyskkDLMGETTQ---KAELY---TDTHIYKY-----EKIDDVYQmDYSEGEYNPRPGFGR 200
|
|
| |
