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Conserved domains on  [gi|518301671|ref|WP_019471879|]
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MULTISPECIES: SEC-C metal-binding domain-containing protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SecA super family cl43225
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 37-67 3.79e-14

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG0653:

Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 64.67  E-value: 3.79e-14
                         10        20        30
                 ....*....|....*....|....*....|.
gi 518301671  37 QEPVRNALKdVGRNDPCPCGSEKKFKKCHGA 67
Cdd:COG0653  845 KQPVRKGPK-VGRNDPCPCGSGKKYKHCHGK 874
 
Name Accession Description Interval E-value
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 37-67 3.79e-14

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 64.67  E-value: 3.79e-14
                         10        20        30
                 ....*....|....*....|....*....|.
gi 518301671  37 QEPVRNALKdVGRNDPCPCGSEKKFKKCHGA 67
Cdd:COG0653  845 KQPVRKGPK-VGRNDPCPCGSGKKYKHCHGK 874
PRK05590 PRK05590
hypothetical protein; Provisional
 40-66 1.25e-11

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 55.75  E-value: 1.25e-11
                         10        20
                 ....*....|....*....|....*..
gi 518301671  40 VRNALKdVGRNDPCPCGSEKKFKKCHG 66
Cdd:PRK05590 139 VVNENK-VGRNDPCPCGSGKKYKKCCG 164
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 48-66 1.95e-07

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 43.84  E-value: 1.95e-07
                          10
                  ....*....|....*....
gi 518301671   48 GRNDPCPCGSEKKFKKCHG 66
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 49-66 6.36e-05

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 35.53  E-value: 6.36e-05
                         10
                 ....*....|....*...
gi 518301671  49 RNDPCPCGSEKKFKKCHG 66
Cdd:pfam02810  1 RNDPCPCGSGKKYKKCCG 18
 
Name Accession Description Interval E-value
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 37-67 3.79e-14

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 64.67  E-value: 3.79e-14
                         10        20        30
                 ....*....|....*....|....*....|.
gi 518301671  37 QEPVRNALKdVGRNDPCPCGSEKKFKKCHGA 67
Cdd:COG0653  845 KQPVRKGPK-VGRNDPCPCGSGKKYKHCHGK 874
PRK05590 PRK05590
hypothetical protein; Provisional
 40-66 1.25e-11

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 55.75  E-value: 1.25e-11
                         10        20
                 ....*....|....*....|....*..
gi 518301671  40 VRNALKdVGRNDPCPCGSEKKFKKCHG 66
Cdd:PRK05590 139 VVNENK-VGRNDPCPCGSGKKYKKCCG 164
PRK10396 PRK10396
hypothetical protein; Provisional
 37-64 1.07e-09

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 51.67  E-value: 1.07e-09
                         10        20
                 ....*....|....*....|....*...
gi 518301671  37 QEPVRNALKdVGRNDPCPCGSEKKFKKC 64
Cdd:PRK10396 192 QQPIKAEEK-VGRNDPCPCGSGKKFKQC 218
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 37-67 2.67e-08

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 44.89  E-value: 2.67e-08
                        10        20        30
                ....*....|....*....|....*....|.
gi 518301671 37 QEPVRNALKDVGRNDPCPCGSEKKFKKCHGA 67
Cdd:COG3318  14 LAIPRRAEPKVGRNDPCPCGSGKKYKKCCGA 44
PRK01617 PRK01617
hypothetical protein; Provisional
 47-66 3.48e-08

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 46.56  E-value: 3.48e-08
                         10        20
                 ....*....|....*....|
gi 518301671  47 VGRNDPCPCGSEKKFKKCHG 66
Cdd:PRK01617 134 FGRNDPCPCGSGKKFKKCCG 153
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 51-67 7.40e-08

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 46.62  E-value: 7.40e-08
                         10
                 ....*....|....*..
gi 518301671  51 DPCPCGSEKKFKKCHGA 67
Cdd:PRK12904 812 DPCPCGSGKKYKHCHGR 828
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 48-66 1.95e-07

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 43.84  E-value: 1.95e-07
                          10
                  ....*....|....*....
gi 518301671   48 GRNDPCPCGSEKKFKKCHG 66
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
secA PRK12901
preprotein translocase subunit SecA; Reviewed
 37-66 1.92e-06

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237256 [Multi-domain]  Cd Length: 1112  Bit Score: 42.70  E-value: 1.92e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 518301671   37 QEPVRNAlKDVGRNDPCPC-----GSEKKFKKCHG 66
Cdd:PRK12901 1066 ETPVRVE-KKIGRNDPVPCqnvdgGSGKKYKFKHA 1099
PRK00183 PRK00183
hypothetical protein; Provisional
 47-64 2.81e-06

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 41.71  E-value: 2.81e-06
                         10
                 ....*....|....*...
gi 518301671  47 VGRNDPCPCGSEKKFKKC 64
Cdd:PRK00183 134 AGRNDPCPCGSGQKFKKC 151
PRK02250 PRK02250
hypothetical protein; Provisional
 45-66 1.02e-05

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 40.25  E-value: 1.02e-05
                         10        20
                 ....*....|....*....|..
gi 518301671  45 KDVGRNDPCPCGSEKKFKKCHG 66
Cdd:PRK02250 145 LKQGRNDPCICGSGKKFKKCCG 166
PRK12318 PRK12318
methionyl aminopeptidase;
47-65 5.42e-05

methionyl aminopeptidase;


Pssm-ID: 183434 [Multi-domain]  Cd Length: 291  Bit Score: 38.65  E-value: 5.42e-05
                         10
                 ....*....|....*....
gi 518301671  47 VGRNDPCPCGSEKKFKKCH 65
Cdd:PRK12318   1 MKRNDPCWCGSGKKWKHCH 19
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 49-66 6.36e-05

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 35.53  E-value: 6.36e-05
                         10
                 ....*....|....*...
gi 518301671  49 RNDPCPCGSEKKFKKCHG 66
Cdd:pfam02810  1 RNDPCPCGSGKKYKKCCG 18
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 48-64 8.78e-03

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 32.12  E-value: 8.78e-03
                         10
                 ....*....|....*..
gi 518301671  48 GRNDPCPCGSEKKFKKC 64
Cdd:COG3012    1 PSNSPCPCGSGKPYADC 17
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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