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Conserved domains on  [gi|518364657|ref|WP_019534864|]
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flagellar motor protein [Paenibacillus ginsengihumi]

Protein Classification

motility protein A( domain architecture ID 10003437)

motility protein A (MotA) is a flagellar motor protein which is energized by a proton (H(+)) motive force

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MotA COG1291
Flagellar motor component MotA [Cell motility];
16-260 1.25e-109

Flagellar motor component MotA [Cell motility];


:

Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 316.63  E-value: 1.25e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  16 LVGGYLWDGGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLA 95
Cdd:COG1291   14 VLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYEELIELLVELAEKARKEGLLA 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  96 LEQRALEHPNPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDP 175
Cdd:COG1291   94 LESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDP 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 176 EGLGPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFLHQERKPTEGA 255
Cdd:COG1291  174 SALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253


                 ....*
gi 518364657 256 GEAVA 260
Cdd:COG1291  254 EELKG 258
 
Name Accession Description Interval E-value
MotA COG1291
Flagellar motor component MotA [Cell motility];
16-260 1.25e-109

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 316.63  E-value: 1.25e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  16 LVGGYLWDGGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLA 95
Cdd:COG1291   14 VLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYEELIELLVELAEKARKEGLLA 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  96 LEQRALEHPNPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDP 175
Cdd:COG1291   94 LESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDP 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 176 EGLGPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFLHQERKPTEGA 255
Cdd:COG1291  174 SALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253


                 ....*
gi 518364657 256 GEAVA 260
Cdd:COG1291  254 EELKG 258
motC PRK09109
flagellar motor protein; Reviewed
 16-246 2.41e-90

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 267.19  E-value: 2.41e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  16 LVGGYLWDGGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLA 95
Cdd:PRK09109  16 IIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLEGGIDRIVEWSNTARKEGLLG 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  96 LEQRALEHPNPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDP 175
Cdd:PRK09109  96 LEDVADREPDPFARKGLQLLVDGAEPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMGLIHVMENLADP 175

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 518364657 176 EGLGPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFLH 246
Cdd:PRK09109 176 SQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIELKLQGYLH 246
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 105-215 5.44e-34

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 119.12  E-value: 5.44e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  105 NPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTD----PEGLGP 180
Cdd:pfam01618   7 DRFLKKGLQLVVDGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNLGDagpgLSALAP 86

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 518364657  181 AIAVAFCATLYGVSTAnVIYLPIASKIKIRSKEQV 215
Cdd:pfam01618  87 GIAEALIATAYGLFVA-IPALPFYNKLKRRSEREV 120
 
Name Accession Description Interval E-value
MotA COG1291
Flagellar motor component MotA [Cell motility];
16-260 1.25e-109

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 316.63  E-value: 1.25e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  16 LVGGYLWDGGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLA 95
Cdd:COG1291   14 VLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYEELIELLVELAEKARKEGLLA 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  96 LEQRALEHPNPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDP 175
Cdd:COG1291   94 LESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDP 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 176 EGLGPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFLHQERKPTEGA 255
Cdd:COG1291  174 SALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253


                 ....*
gi 518364657 256 GEAVA 260
Cdd:COG1291  254 EELKG 258
motC PRK09109
flagellar motor protein; Reviewed
 16-246 2.41e-90

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 267.19  E-value: 2.41e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  16 LVGGYLWDGGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLA 95
Cdd:PRK09109  16 IIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLEGGIDRIVEWSNTARKEGLLG 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  96 LEQRALEHPNPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDP 175
Cdd:PRK09109  96 LEDVADREPDPFARKGLQLLVDGAEPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMGLIHVMENLADP 175

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 518364657 176 EGLGPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFLH 246
Cdd:PRK09109 176 SQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIELKLQGYLH 246
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 16-257 2.37e-83

flagellar motor protein MotA; Validated


Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 250.26  E-value: 2.37e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  16 LVGGYLWDGGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKR-DQGATIDEIVDMATVARREGVL 94
Cdd:PRK08124  16 VVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKKVPKLFKVLFKEKKDpSKEELIEQFVEWASESRREGLL 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  95 ALEQRALEHPNPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTD 174
Cdd:PRK08124  96 ALEAQLDEIDDPFLKRGLKMVIDGQSPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIGLIAALGNLSD 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 175 PEGLGPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFLH-QERKPTE 253
Cdd:PRK08124 176 IEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYIIIEGVLAIQEGNAPRVIEEKLLGYLSpKERKKLE 255


                 ....
gi 518364657 254 GAGE 257
Cdd:PRK08124 256 EGAE 259
PRK06926 PRK06926
flagellar motor protein MotP; Reviewed
 34-253 6.74e-62

flagellar motor protein MotP; Reviewed


Pssm-ID: 180755 [Multi-domain]  Cd Length: 271  Bit Score: 195.70  E-value: 6.74e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  34 SALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLALEQRALEHPNPFLRDGLM 113
Cdd:PRK06926  39 TSILIVTGGLCAALFISFSPKDLKLAPRVLKQAFQSQEDDVEELVQTFVSLSEKARREGLLSLEAELEEVKDPFIKKGLL 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 114 MVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDPEGLGPAIAVAFCATLYGV 193
Cdd:PRK06926 119 LAIDGWEPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYAPAWGMIGTLVGLVLMLKNLNDPSTLGPNMAIALLTTLYGT 198

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 194 STANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFLHQERKPTE 253
Cdd:PRK06926 199 LLANLVFLPIAAKLEEKTEEEVFVKQVIIEGVIGVQSGQNPRILEEKLSVFSSKEDWTKE 258
PRK08990 PRK08990
flagellar motor protein PomA; Reviewed
 24-245 1.99e-54

flagellar motor protein PomA; Reviewed


Pssm-ID: 181604 [Multi-domain]  Cd Length: 254  Bit Score: 176.00  E-value: 1.99e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  24 GGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLALEQRalEH 103
Cdd:PRK08990  23 GGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQFFGAVKIAGKAFMFKIDKPEDLIEQIVEMADAARKGGFLALEEA--EI 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 104 PNPFLRDGLMMVVDGTDPELTRQILELEID-SMERHHEGwAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDPEGLGPAI 182
Cdd:PRK08990 101 SNSFMQKGVDLLVDGHDGDVVRAALEKDIAlTEERHETG-IGIFRAFGDVAPAMGMIGTLIGLVAMLSNMDDPKSIGPAM 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 518364657 183 AVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFL 245
Cdd:PRK08990 180 AVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKNYL 242
PRK08456 PRK08456
flagellar motor protein MotA; Validated
 17-245 3.37e-52

flagellar motor protein MotA; Validated


Pssm-ID: 181434 [Multi-domain]  Cd Length: 257  Bit Score: 170.29  E-value: 3.37e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  17 VGGYLWDGGHLEALFVpSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLAL 96
Cdd:PRK08456  18 VGDILEGGNPLHVIHL-SSFIIVVPTALFAAMTATHKKYVKAAYKELKIVFKNPGVNLNERIKQLVELATLARKDGVLAL 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  97 EQRALEHPNPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDPE 176
Cdd:PRK08456  97 EGRVAQIEDEFLKNGLSMLVDGKDLEEIKESMEIQIEEMEEYYHGAAHYWITAGETCPTMGLVGAVMGLMLALQKLDNPA 176

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 518364657 177 GLGPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFL 245
Cdd:PRK08456 177 EMAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILEGILGIAEGANPRDLEEKLLNYL 245
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 105-215 5.44e-34

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 119.12  E-value: 5.44e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  105 NPFLRDGLMMVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTD----PEGLGP 180
Cdd:pfam01618   7 DRFLKKGLQLVVDGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNLGDagpgLSALAP 86

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 518364657  181 AIAVAFCATLYGVSTAnVIYLPIASKIKIRSKEQV 215
Cdd:pfam01618  87 GIAEALIATAYGLFVA-IPALPFYNKLKRRSEREV 120
PRK06743 PRK06743
flagellar motor protein MotP; Reviewed
 34-249 1.47e-30

flagellar motor protein MotP; Reviewed


Pssm-ID: 136027  Cd Length: 254  Bit Score: 114.30  E-value: 1.47e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  34 SALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATVARREGVLALEQRALEHPNPFLRDGLM 113
Cdd:PRK06743  31 SSILIVIGGTTATIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLSLEVDGEQVDNPFIQKGIR 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 114 MVVDGTDPELTRQILELEIDSMERHHEGWAKIFEAAGGFAPTMGIIGTVMGLIHVLGNLTDPEGLGPAIAVAFCATLYGV 193
Cdd:PRK06743 111 LMLSGYDEDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMIGTLIGLIIMLQNLQDTSQIGTGMAVAMLTTLYGS 190

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 518364657 194 STANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGENPQLIKKKLHSFLHQER 249
Cdd:PRK06743 191 VLANMIAIPLAEKVYRGIEDLYTEKKFVIEAISELYRGQIPSKLKLKLDTYVYETK 246
PRK09110 PRK09110
flagellar motor stator protein MotA;
17-236 4.19e-25

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 100.62  E-value: 4.19e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  17 VGGYLWDGGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIVDMATV---ARREGV 93
Cdd:PRK09110  15 FGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALLYELlrkARQEGM 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  94 LALEQRaLEHPN--------P----------FLRDGLMMVVDGT-DPELTRQILELEIDSMERHHEGWAKIFEAAGGFAP 154
Cdd:PRK09110  95 MALEAH-IENPEespifakyPkilkdhhlvdFICDYLRLMISGNmNPHEIEALMDEEIETHHHEAEVPAHALQKVADALP 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 155 TMGIIGTVMGLIHVLGNLT-DPEGLGPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQAGEN 233
Cdd:PRK09110 174 AFGIVAAVLGVVKTMGSIDqPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQCIKVTLLASLNGYA 253


                 ...
gi 518364657 234 PQL 236
Cdd:PRK09110 254 PQI 256
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 17-92 4.41e-12

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 60.49  E-value: 4.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657   17 VGGYLWDGGHLEALF-VPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFKEPKRDQGATIDEIV---DMATVARREG 92
Cdd:pfam20560  12 FGGYALAGGHLGVLWqLPFELLIIGGAAIGAFIIANPMKVLKATLKALPKAFKGSKYKKADYLDLLAllyELLRKARKEG 91
PRK12482 PRK12482
flagellar motor stator protein MotA;
16-252 1.65e-09

flagellar motor stator protein MotA;


Pssm-ID: 171532 [Multi-domain]  Cd Length: 287  Bit Score: 57.07  E-value: 1.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  16 LVGGYLWDGGHLEALFVPSALLIVVGGTIGAVIVSFPMARLKEIGKALSMAFK------EPKRDQGATIDEIVDMATV-- 87
Cdd:PRK12482  14 VFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKEMWHQIKGVIRrkeygvEFQRQLLLLLYELLEMVQEgg 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  88 --ARREGVLALEQRALEHPNP----------FLRDGL-MMVVDGTDPELTRQILELEIDSMERH----HEGWAKIFEAAG 150
Cdd:PRK12482  94 lkRLDQHIEIPEESSLFQKYPlilqqkrlitFISDNFrLMAMGKINQHELEGILDQELDAVEEEllqpSRSLQRIAEAMP 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657 151 GFaptmGIIGTVMGLIHVLGNLTDPEGL-GPAIAVAFCATLYGVSTANVIYLPIASKIKIRSKEQVAEMELMLEGILALQ 229
Cdd:PRK12482 174 GF----GICAAVLGIIITMQSIDGSIAEiGLKVAAALVGTFLGVFICYCLMDPLANAMEQEIKKELSLLECVRTVLVAHV 249

                        250       260
                 ....*....|....*....|...
gi 518364657 230 AGENPQLIKKKLHSFLHQERKPT 252
Cdd:PRK12482 250 AGKPTLLAVDAGRKLLPLDNKPT 272
TolQ COG0811
Biopolymer transport protein ExbB/TolQ [Intracellular trafficking, secretion, and vesicular ...
 89-228 2.08e-07

Biopolymer transport protein ExbB/TolQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440573  Cd Length: 199  Bit Score: 49.84  E-value: 2.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518364657  89 RREGVLALEQRALEHPNPF---LRDGLMMVVDGTDPELTRQILE----LEIDSMERHHegwaKIFEAAGGFAPTMGIIGT 161
Cdd:COG0811   53 SAGDLDEAIELCEARNSPLariLAAGLRELKSGGGREAIERALEeaasRELPRLERGL----SFLATIGSIAPLLGLLGT 128

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518364657 162 VMGLIHVLGNL-----TDPEGLGPAIAVAFCATLYGVSTANVIYLpIASKIKIRSKEQVAEMELMLEGILAL 228
Cdd:COG0811  129 VWGMINAFQAIaaagqADLAVVAGGISEALITTAAGLAVAIPAVI-AYNYFSRRIDRLVAELEEFAEELLAL 199
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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